View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19389_low_2 (Length: 264)
Name: NF19389_low_2
Description: NF19389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19389_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 21 - 232
Target Start/End: Original strand, 30619889 - 30620100
Alignment:
| Q |
21 |
gacagtaaagaaaataaataatgttgtatgctcgtctgatcattctgttatttaactcccatatgggaacatcaagtgatggaaaatactcaagacttaa |
120 |
Q |
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| T |
30619889 |
gacagtaaagaaaataaataatgctgtatgctcgtctgatcattctgttatttaactcccatatgggaacatcaagtgatggaaaatactcaagacttaa |
30619988 |
T |
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| Q |
121 |
tacaatgaacatagccacaatgatctatataaatgataaaatgacattcaagaatcagcaaagttatcatgagatgcaatggaaatcacttgtttaggcc |
220 |
Q |
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| T |
30619989 |
tacaatgaacatagccacaatgatctatataaatgataaaatgacatgcaagaatcagcaaagttatcatgagatgcaatggaaatcacttgtttaggcc |
30620088 |
T |
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| Q |
221 |
aaatggagcgga |
232 |
Q |
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|||||||||||| |
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| T |
30620089 |
aaatggagcgga |
30620100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 21 - 174
Target Start/End: Original strand, 30628090 - 30628231
Alignment:
| Q |
21 |
gacagtaaagaaaataaataatgttgtatgctcgtctgatcattctgttatttaactcccatatgggaacatcaagtgatggaaaatactcaagacttaa |
120 |
Q |
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||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||| | |||||| | |||||||||| |
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| T |
30628090 |
gacagtaaagaaaataaataatgttgtatactcgt------------ttatttaactccgatatgggaacatcaagtggtcgaaaatccccaagacttaa |
30628177 |
T |
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| Q |
121 |
tacaatgaacatagccacaatgatctatataaatgataaaatgacattcaagaa |
174 |
Q |
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| T |
30628178 |
tacaatgaacagagccacaataatctatataaatgataaaatgacatccaagaa |
30628231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 170 - 236
Target Start/End: Original strand, 30628412 - 30628478
Alignment:
| Q |
170 |
aagaatcagcaaagttatcatgagatgcaatggaaatcacttgtttaggccaaatggagcggaaaca |
236 |
Q |
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||||||||||||||||||| |||||||||||| || |||||||| ||| | |||||||| ||||||| |
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| T |
30628412 |
aagaatcagcaaagttatcttgagatgcaatgtaattcacttgtctagacaaaatggaggggaaaca |
30628478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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