View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19389_low_3 (Length: 239)
Name: NF19389_low_3
Description: NF19389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19389_low_3 |
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| [»] scaffold0287 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 3621162 - 3621383
Alignment:
| Q |
1 |
tgaaattttggaagaacaaacatggttagatatcttttcaatcattagcttgacctcagatattctcacatgagcaaagctagaaannnnnnnggagcta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
3621162 |
tgaaattttggaagaacaaacatggttagatatcttttcaatcattagcttgacctcagattttctcacatgagcaaagctagaaatttttttggagcta |
3621261 |
T |
|
| Q |
101 |
aagaaatggacaacacaaatttttcttatctctctccaacaatcattgtatggtgaaaatatcatatctataccattgtatgacaatgtttttggaccat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3621262 |
aagaaatggacaacacaaatttttcttatctctctccaacaatcattgtatggtgaaaatatcatatctataccattatatgacaatgtttttggaccat |
3621361 |
T |
|
| Q |
201 |
gtgatggaggtctactagatac |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
3621362 |
gtgatggaggtctactagatac |
3621383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 3631577 - 3631780
Alignment:
| Q |
19 |
aacatggttagatatcttttcaatcattagcttgacctcagatattctcacatgagcaaagctagaaannnnnnnggagctaaagaaatggacaacacaa |
118 |
Q |
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||||||||||||||| |||||||||||| |||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||| |||| |
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| T |
3631577 |
aacatggttagatattttttcaatcatttgcttgacctcagattttctcacatgagaaaagctagaaatttttttggagctaaagaaatggacaatacaa |
3631676 |
T |
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| Q |
119 |
atttttcttatctctctccaacaatcattgtatggtgaaaatatcatatctataccattgtatgacaatgtttttggaccatgtgatggaggtctactag |
218 |
Q |
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| T |
3631677 |
atttttcttatctctctccaatgatcattgtatggtgaaaatatcatatccatgccattgtatgacaatatttgtgtaccatatgatggaggtctactag |
3631776 |
T |
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| Q |
219 |
atac |
222 |
Q |
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|||| |
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| T |
3631777 |
atac |
3631780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0287 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 19 - 222
Target Start/End: Complemental strand, 14508 - 14305
Alignment:
| Q |
19 |
aacatggttagatatcttttcaatcattagcttgacctcagatattctcacatgagcaaagctagaaannnnnnnggagctaaagaaatggacaacacaa |
118 |
Q |
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||||||||||||||| |||||||||||| |||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||| |||| |
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| T |
14508 |
aacatggttagatattttttcaatcatttgcttgacctcagattttctcacatgagaaaagctagaaatttttttggagctaaagaaatggacaatacaa |
14409 |
T |
|
| Q |
119 |
atttttcttatctctctccaacaatcattgtatggtgaaaatatcatatctataccattgtatgacaatgtttttggaccatgtgatggaggtctactag |
218 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||| ||| || ||||| ||||||||||||||||| |
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| T |
14408 |
atttttcttatctctctccaatgatcattgtatggtgaaaatatcatatccatgccattgtatgacaatatttgtgtaccatatgatggaggtctactag |
14309 |
T |
|
| Q |
219 |
atac |
222 |
Q |
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|||| |
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| T |
14308 |
atac |
14305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 162
Target Start/End: Complemental strand, 9027422 - 9027370
Alignment:
| Q |
110 |
acaacacaaatttttcttatctctctccaacaatcattgtatggtgaaaatat |
162 |
Q |
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|||||||||||||||||||| ||||||||| ||||| ||||| |||||||||| |
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| T |
9027422 |
acaacacaaatttttcttatttctctccaaaaatcagtgtattgtgaaaatat |
9027370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 161
Target Start/End: Complemental strand, 8975682 - 8975619
Alignment:
| Q |
98 |
ctaaagaaatggacaacacaaatttttcttatctctctccaacaatcattgtatggtgaaaata |
161 |
Q |
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||||| ||||| |||||| ||||||||||||| ||||||||| |||| ||||||| ||||||| |
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| T |
8975682 |
ctaaataaatgcacaacagaaatttttcttatttctctccaaatatcactgtatggagaaaata |
8975619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 159
Target Start/End: Original strand, 9002443 - 9002490
Alignment:
| Q |
112 |
aacacaaatttttcttatctctctccaacaatcattgtatggtgaaaa |
159 |
Q |
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|||||||||||||||||| ||||||||| ||||| ||||| ||||||| |
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| T |
9002443 |
aacacaaatttttcttatttctctccaaaaatcagtgtattgtgaaaa |
9002490 |
T |
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