View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1938_high_10 (Length: 309)
Name: NF1938_high_10
Description: NF1938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1938_high_10 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 309
Target Start/End: Complemental strand, 28330421 - 28330130
Alignment:
| Q |
18 |
gtccatgttagacagcttaaattagagattctaagagtatggtacctccagaagaaccttcagaattatcagcactaggaggaattgattccgcattggc |
117 |
Q |
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| T |
28330421 |
gtccatgttagacagcttaaattagagattctaagagtatggtacctccagaagaaccttcagaattatcagcactaggaggaattgattccgcattggc |
28330322 |
T |
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| Q |
118 |
aacaggagattttgatgctttagaccctgtatttgagccattatccaaacctttggtaaaccctgtttcagatgctactatcccttggaattcctcgcta |
217 |
Q |
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| T |
28330321 |
aacaggagattttgatgctttagaccctgtatttgagccattatccaaacctttggtaaaccctgtttcagatgctactatcccttggaattcctcgcta |
28330222 |
T |
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| Q |
218 |
acaattattgcagccaaaacatccataaatgattctttatctgttgggtacgcagattctcttacgcccatcttatcagtgacatttgcttc |
309 |
Q |
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| T |
28330221 |
acaattattgcagccaaaacatccataaatgattctttatctgttgggtacgcagattctcttacgcccatcttatcagtgacatttgcttc |
28330130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 309
Target Start/End: Complemental strand, 44781899 - 44781608
Alignment:
| Q |
18 |
gtccatgttagacagcttaaattagagattctaagagtatggtacctccagaagaaccttcagaattatcagcactaggaggaattgattccgcattggc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44781899 |
gtccatgttagacagcttaaattagagattctaagagtatggtacctccagaagaaccttcagaattatcagcactaggaggaattgattccgcattggc |
44781800 |
T |
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| Q |
118 |
aacaggagattttgatgctttagaccctgtatttgagccattatccaaacctttggtaaaccctgtttcagatgctactatcccttggaattcctcgcta |
217 |
Q |
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| T |
44781799 |
aacaggagattttgatgctttagaccctgtatttgagccattatccaaacctttggtaaaccctgtttcagatgctactatcccttggaattcctcgcta |
44781700 |
T |
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| Q |
218 |
acaattattgcagccaaaacatccataaatgattctttatctgttgggtacgcagattctcttacgcccatcttatcagtgacatttgcttc |
309 |
Q |
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| T |
44781699 |
acaattattgcagccaaaacatccataaatgattctttatctgttgggtacgcagattctcttacgcccgtcttatcagtgacatttgcttc |
44781608 |
T |
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