View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1938_high_11 (Length: 295)
Name: NF1938_high_11
Description: NF1938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1938_high_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 40007219 - 40007493
Alignment:
| Q |
1 |
agcaagagtgcataaataaattctctgctgacacagtcacatactaaggatgaatagcatatagacaacctatttagctataagaaagctatgccacatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
40007219 |
agcaagagtgcataaataaattctctgcggacacagtcacatactaaggatgaatagcatatagacaacctatttagctataacaaagctatgccacatt |
40007318 |
T |
|
| Q |
101 |
tgtgatccgaggagaagtaaaactaaaaaataaagcaaagaggtacgaaaagaattaaagaggtgcaagtaaatttaggacacaagatccgaatgaatca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40007319 |
tgtgatccgaggagaagtaaaactaaaaaataaagcaaagaggtacgaaaagaattaaa-aggtgcaagtaaatttaggacacaagatccgaatgaatca |
40007417 |
T |
|
| Q |
201 |
tttcattaaatatataagatagaatagaatgatagaacccagctaaggtaggtctgagcaatgtaatagtacaaca |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40007418 |
tttcattaaatatataagatagaatagaatgatagaacccagctaaggtaggtctgagcaatgtaatagtacaaca |
40007493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University