View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1938_high_4 (Length: 452)
Name: NF1938_high_4
Description: NF1938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1938_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 16 - 436
Target Start/End: Complemental strand, 5891286 - 5890862
Alignment:
| Q |
16 |
attcataattattatagccaaaaaatttctggtttgcaaagtttggattagtatttataaatcatagctagagtttgatataattatttctcatatggtt |
115 |
Q |
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| T |
5891286 |
attcataattattatagccaaaaaatttctggtttgcaaagtttggattagtatttataaatcatagctagagtttgatataattatttctcatatggtt |
5891187 |
T |
|
| Q |
116 |
taacaattctctagcaaatttggaatttttcttaagnnnnnnnnnnnnctcttgatattt---atatcagaagaattgtcaacaaaccatataaaaattg |
212 |
Q |
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| T |
5891186 |
taacaattctctagcaaatttggaatttttcttaagtttttgttttttctcttgatattttttatatcagaagaattgtcaacaaaccatataaaaattg |
5891087 |
T |
|
| Q |
213 |
actactcttcttcctgaagaattttccctgcaacaggagacatctcaacatttaacctattatgattaagaattgaaagcttgcagaaagggtcaatgaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5891086 |
actactcttcttcctgaagaattttccctgcaacaggagacatctcaacatttaacctattatgattaagaattgaaagcttgcagaaagggtcaatgaa |
5890987 |
T |
|
| Q |
313 |
tatgtctgaattattttaggtgagaaataattaatctgactttcaatgtttatgaaatt-cttcttctgaattatttataacctattgtatatgtcatta |
411 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
5890986 |
tatgtctgaattattttaggtaagaaataattaatctgactttcaatgtttatgaaattgcttcttctgaattatttataacctattgtatatgtcatta |
5890887 |
T |
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| Q |
412 |
ttctttgaaataattttttatatat |
436 |
Q |
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||||||||||||||||||||||||| |
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| T |
5890886 |
ttctttgaaataattttttatatat |
5890862 |
T |
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