View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1938_high_6 (Length: 376)
Name: NF1938_high_6
Description: NF1938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1938_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 5174101 - 5174457
Alignment:
| Q |
1 |
agagtgagtggtcaaatacaaatattaaaaccacgaactttattctcaaaaaggaaaatatcgaaatttctattcaaaatttccatacatacacatgcat |
100 |
Q |
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| T |
5174101 |
agagtgagtggtcaaatacaaatattaaaatcacgaactttattctcaaaaaagaaaatatcgaaatttctattcaaaatttccatacatacacatgcat |
5174200 |
T |
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| Q |
101 |
aatgcacgtaaatattcttgcacgtgtactatgttcccatatataaatattgtgtatcnnnnnnnnntctgtgtacacattagcaaaagaattagttttg |
200 |
Q |
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| T |
5174201 |
aatgcacgtaaatattcttgcacgtgtactatgttcccgtatataaatattgtgtatcaaaaaaaaatctgtgtacacattagcaaaagaattagttttg |
5174300 |
T |
|
| Q |
201 |
cattacagaagttggtgaaaacaaaattaattcagaatagggcaatgcatctaagctccaacaacttcttgagcttgtttcgacttccctttacttttca |
300 |
Q |
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| T |
5174301 |
cattacagaagttggtgaaaacaaaattaattcagaatagggcaatgcatctaagctccaacaacttcttgagcttgtttcgacttccctttacttttca |
5174400 |
T |
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| Q |
301 |
gagtcttcttaccgactgcaacccctttgtcttcttccacttcaatcctagcaaagactg |
360 |
Q |
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| T |
5174401 |
gagtcttcttaccgactgcaacccctttg---tcttccacttcaatcctagcaaagactg |
5174457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 42 - 334
Target Start/End: Original strand, 52001895 - 52002180
Alignment:
| Q |
42 |
attctcaaaaaggaaaatatcgaaatttctattcaaaatttccatacatacacatgcataatgcacgtaaatattcttgcacgtg----tactatgttcc |
137 |
Q |
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|||| ||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| || ||||||||||| |
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| T |
52001895 |
attcccaaaaagaaaaaaatcgaaatttctattcaaaatttccatacatgcacatgcataatgcacgtaaatattctttcacatgcatgtactatgttcc |
52001994 |
T |
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| Q |
138 |
catatataaatattgtgtatcnnnnnnnnntctgtgtacacattagcaaaagaattagttttgcattacagaagttggtgaaaacaaaattaat----tc |
233 |
Q |
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| T |
52001995 |
tatatataaatatt-tgtgt--------------tacacatattagcaaaagaattagttttacattcaagaagttggtgaaaacaaaaaaaaaaaaatc |
52002079 |
T |
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| Q |
234 |
agaatagggcaatgcatctaagctccaacaacttcttgagcttgtttcgacttccctttacttttcagagtcttcttaccgactgcaacccctttgtctt |
333 |
Q |
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| T |
52002080 |
agaatagggcaatgcatctaagctccaacaacttcttgagcttgtttcgacttccctttacttttcagagtcttcttaccgactgcaacccctttgtctt |
52002179 |
T |
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