View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1938_low_1 (Length: 703)
Name: NF1938_low_1
Description: NF1938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1938_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 646; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 646; E-Value: 0
Query Start/End: Original strand, 13 - 690
Target Start/End: Original strand, 31184963 - 31185640
Alignment:
| Q |
13 |
aatatactgtttcaaatttcaatcatgtcttaatatgtgtaagttgtagaaggtaaaaagtcagagaaatagagatgaacatatacaacgtattttgatg |
112 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
31184963 |
aatatactgtttcaaatttcaatcatgtcttaatatgtgtaagttgtagaaggtaaaaattcagagaaataaagatgaacatatacaacgtattttgatg |
31185062 |
T |
|
| Q |
113 |
ttcaaataacatagttgtattaattttgtataagtgtatatttaatgtttctaaaatataagtttacattcatgtagccatatgttcaaacaagataaag |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31185063 |
ttcaaataacatagttgtattaattttgtataagtgtatatttaatgtttctaaaatataagtttaaattcatgtagccatatgttcaaacaagataaag |
31185162 |
T |
|
| Q |
213 |
aaaaatacaagcttgagacacaagttacataactggataatttaagcagttggataagaagaatccatggcaataccacacaagccttccttagcagcta |
312 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31185163 |
aaaaatacaagcttgagacacaagttacataactggataatttaagcagttggataagaagaatccatggcaataccacataagccttccttagcagcta |
31185262 |
T |
|
| Q |
313 |
tacctctttgcatccttatgtaccctttctcaccccacacagtgccccatgaattcttcacaatccaataatcagtaccattagcactaccatatccaac |
412 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31185263 |
tacctctttgcatccttatgtaccctttttcaccccacacagtgccccatgaattcttcacaatccaataatcagtaccattagcactaccatatccaac |
31185362 |
T |
|
| Q |
413 |
agcagtgacaccatgatctagctcagttccacattctcctgtataaattccacttgagtaaaacatgaaacttgagtcactagcatcaatggaaactgat |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31185363 |
agcagtgacaccatgatctagctcagttccacattctcctgtataaattccacttgagtaaaacatgaaacttgagtcactagcatcaatggaaactgat |
31185462 |
T |
|
| Q |
513 |
attggttggtttgccacagctttgagaagtgatatctcactattaaccggaactttctcatatcctgtaatcttagccacaggagtggttgttgcagtgt |
612 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31185463 |
attggttggttcgccacagctttgagaagtgatttctcactattaactggaactttctcatatcctgtaatcttagccacaggagtggttgttgcagtgt |
31185562 |
T |
|
| Q |
613 |
tacaacttccatccgctgctttataagggtaattagtctcacttgtaattccaccatttttaatgataaattcaaatc |
690 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31185563 |
tacaacttccatccgctgctttataagggtaattagtctcacttgtaattccaccatttttaatgataaattcaaatc |
31185640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 214 - 690
Target Start/End: Original strand, 31193991 - 31194467
Alignment:
| Q |
214 |
aaaatacaagcttgagacacaagttacataactggataatttaagcagttggataagaagaatccatggcaataccacacaagccttccttagcagctat |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||| | | | ||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||| |
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|
| T |
31193991 |
aaaatacaagcttgagacacaagttacataattcaacaggttaagcagttggataagaagaatccattgcaataccacataagccttccttatcagctat |
31194090 |
T |
|
| Q |
314 |
acctctttgcatccttatgtaccctttctcaccccacacagtgccccatgaattcttcacaatccaataatcagtaccattagcactaccatatccaaca |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
31194091 |
acctctttgcatccttatgtaccctttctcaccccacacagtgccccatgaattcttcacaatccaataatcagtcccattagcactaccataaccaaca |
31194190 |
T |
|
| Q |
414 |
gcagtgacaccatgatctagctcagttccacattctcctgtataaattccacttgagtaaaacatgaaacttgagtcactagcatcaatggaaactgata |
513 |
Q |
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|
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
31194191 |
gcagtaacaccatggtctagctcagttccacattctcctgtataaattccacttgagtaaaacatgaaacttgagtcacttgcatcaatagaaactgata |
31194290 |
T |
|
| Q |
514 |
ttggttggtttgccacagctttgagaagtgatatctcactattaaccggaactttctcatatcctgtaatcttagccacaggagtggttgttgcagtgtt |
613 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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|
| T |
31194291 |
ttggttggttcgccacagctttgagaagtgatatctcactattaaccggaactttctcatatcctgtaatcttagccacaggggcagttgttgcagtgtt |
31194390 |
T |
|
| Q |
614 |
acaacttccatccgctgctttataagggtaattagtctcacttgtaattccaccatttttaatgataaattcaaatc |
690 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
31194391 |
acaacttccatcagctgctttataagggtaattagtctcacttgtaattccaccatttttaatgataaactcaaatc |
31194467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 330 - 476
Target Start/End: Original strand, 31176461 - 31176610
Alignment:
| Q |
330 |
atgtaccctttctcaccccacacagtgccccatgaattcttcacaatccaataatcagtaccatta---gcactaccatatccaacagcagtgacaccat |
426 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||| || || | |||||| |||||| || | | |||||| |||||| ||| ||| ||| |
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|
| T |
31176461 |
atgtaccctttctcaccccacccagtaccccatgaattttttactaaccaatactcagtataatcaagtgatacaccataaccaacaatagtaacaacat |
31176560 |
T |
|
| Q |
427 |
gatctagctcagttccacattctcctgtataaattccacttgagtaaaac |
476 |
Q |
| |
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||||| ||||||||||||| ||||||| ||||||||| |||||||||| |
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|
| T |
31176561 |
gatctgtatcagttccacattttcctgtaaaaattccacctgagtaaaac |
31176610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 437 - 481
Target Start/End: Original strand, 29733305 - 29733349
Alignment:
| Q |
437 |
agttccacattctcctgtataaattccacttgagtaaaacatgaa |
481 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||||| |||| |
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|
| T |
29733305 |
agttccacattctcctgtaaaaatcccacttgagtaaaacttgaa |
29733349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 437 - 475
Target Start/End: Complemental strand, 29746924 - 29746886
Alignment:
| Q |
437 |
agttccacattctcctgtataaattccacttgagtaaaa |
475 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||| |
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|
| T |
29746924 |
agttccacattctcctgtaaatattccacttgagtaaaa |
29746886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 437 - 475
Target Start/End: Original strand, 30056369 - 30056407
Alignment:
| Q |
437 |
agttccacattctcctgtataaattccacttgagtaaaa |
475 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||| |
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|
| T |
30056369 |
agttccacattctcctgtaaatattccacttgagtaaaa |
30056407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 437 - 475
Target Start/End: Original strand, 30072889 - 30072927
Alignment:
| Q |
437 |
agttccacattctcctgtataaattccacttgagtaaaa |
475 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||| |
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|
| T |
30072889 |
agttccacattctcctgtaaatattccacttgagtaaaa |
30072927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 437 - 481
Target Start/End: Original strand, 29729969 - 29730013
Alignment:
| Q |
437 |
agttccacattctcctgtataaattccacttgagtaaaacatgaa |
481 |
Q |
| |
|
||||| ||||||||||||| |||| ||||||||||||||| |||| |
|
|
| T |
29729969 |
agttctacattctcctgtaaaaatcccacttgagtaaaacttgaa |
29730013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 318 - 388
Target Start/End: Complemental strand, 31727636 - 31727566
Alignment:
| Q |
318 |
ctttgcatccttatgtaccctttctcaccccacacagtgccccatgaattcttcacaatccaataatcagt |
388 |
Q |
| |
|
||||||||||| |||||||||| |||||||| ||| ||||||||||||||||| | |||||| ||||| |
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|
| T |
31727636 |
ctttgcatcctaatgtacccttcttcaccccattgagttccccatgaattcttcaccaaccaatactcagt |
31727566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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