View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1938_low_3 (Length: 468)
Name: NF1938_low_3
Description: NF1938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1938_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 66 - 456
Target Start/End: Complemental strand, 34869912 - 34869497
Alignment:
| Q |
66 |
agttacatcattcgaaatcacaaacaacgaccaccattcaaaataacatttttcatataaaataaaataaaatgcagaacatgaaccaattgtttgtcat |
165 |
Q |
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| T |
34869912 |
agttacatcattcgaaatcacaaacaacgaccaccattcaaaataacatttttcatataaaataaaat-----gcagaacatgaaccaattgtttgtcat |
34869818 |
T |
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| Q |
166 |
acatgaaattttataaacacctctacaattgaaaacattaactagtcttcatatctcatatgaatatgagtagctaaatgtattagactatggttttata |
265 |
Q |
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| T |
34869817 |
acatgaaattttataaacacctctacaattgaaaacattaactagtcttcgtatctcatatgaatatgagtagctaaatgtattagactatggttttata |
34869718 |
T |
|
| Q |
266 |
agcctccttttcttcaattttctttgcatgacaatgaagtgtaacttacaacaaagtattcaactcagt----------------ctcaactcgtcaaat |
349 |
Q |
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| T |
34869717 |
agcctccttttcttcaattttctttgcatgacaatcaagtgtaacttacaacaaagtattcaactgagtctcaactgatgaagcactcaactcgtcaaat |
34869618 |
T |
|
| Q |
350 |
gagtagttatcattttttgggacactgagagc-tatgaaagacacgaaaacacta-------------tttgaagattcatatgctcctgaaaattactc |
435 |
Q |
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| T |
34869617 |
gagtaattattatttattgggacactgagagcttatgaaagacacgaaaacaccacgaagcatttgagtttgaagattcatatgctcctgaaaattactc |
34869518 |
T |
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| Q |
436 |
gatcttttttagttcagttca |
456 |
Q |
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| T |
34869517 |
gatcttttttagttcagttca |
34869497 |
T |
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