View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1938_low_8 (Length: 319)
Name: NF1938_low_8
Description: NF1938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1938_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 80 - 301
Target Start/End: Complemental strand, 2884909 - 2884688
Alignment:
| Q |
80 |
caatgtaactctttcgggtttgttgaattctattgatggaatttggtcatcatgtggaggagaacggataataattttcacaactaattttgtggacaaa |
179 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2884909 |
caatgtaactctttcgggtttgttgaattctattgatggaatttggtcatcatgtggaggagaacggatcataattttcacaactaattttgtggacaaa |
2884810 |
T |
|
| Q |
180 |
cttgatcctgctctaattaggaggggaaggatggataaacacatagaaatgtcctattgtagatatcaagcgttcaaggttcttgctaagaactacttgg |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2884809 |
cttgatcctgctctaattaggaggggaaggatggataaacacatagaaatgtcctattgtagatatcaagcgttcaaggttcttgctaagaactacttgg |
2884710 |
T |
|
| Q |
280 |
atgttgagtctcatggtgattt |
301 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
2884709 |
atgttgagtctcatggtgattt |
2884688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 80 - 301
Target Start/End: Complemental strand, 2865719 - 2865498
Alignment:
| Q |
80 |
caatgtaactctttcgggtttgttgaattctattgatggaatttggtcatcatgtggaggagaacggataataattttcacaactaattttgtggacaaa |
179 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2865719 |
caatgtaactctttcgggtttgttgaattctattgatggaatttggtcatcatgtggaggagaacggatcataattttcacaactaattttgtggacaaa |
2865620 |
T |
|
| Q |
180 |
cttgatcctgctctaattaggaggggaaggatggataaacacatagaaatgtcctattgtagatatcaagcgttcaaggttcttgctaagaactacttgg |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2865619 |
cttgatcctgctctaattaggaggggaaggatggataaacacatagaaatgtcctattgtagatatcaagcattcaaggttcttgctaagaactacttgg |
2865520 |
T |
|
| Q |
280 |
atgttgagtctcatggtgattt |
301 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
2865519 |
atgttgagtctcatggtgattt |
2865498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 84 - 301
Target Start/End: Complemental strand, 2860330 - 2860113
Alignment:
| Q |
84 |
gtaactctttcgggtttgttgaattctattgatggaatttggtcatcatgtggaggagaacggataataattttcacaactaattttgtggacaaacttg |
183 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2860330 |
gtaactctttcgggtttgttgaattctattgatggaatttggtcatcatgtggaggagaacggatcataattttcacaactaattttgtggacaaacttg |
2860231 |
T |
|
| Q |
184 |
atcctgctctaattaggaggggaaggatggataaacacatagaaatgtcctattgtagatatcaagcgttcaaggttcttgctaagaactacttggatgt |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2860230 |
atcctgctctaattaggaggggaaggatggataaacacatagaaatgtcctattgtagctatcaagcgttcaaggttcttgctaagaactacttggatgt |
2860131 |
T |
|
| Q |
284 |
tgagtctcatggtgattt |
301 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
2860130 |
tgagtctcatggtgattt |
2860113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 84 - 301
Target Start/End: Original strand, 2829148 - 2829365
Alignment:
| Q |
84 |
gtaactctttcgggtttgttgaattctattgatggaatttggtcatcatgtggaggagaacggataataattttcacaactaattttgtggacaaacttg |
183 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||| |||||||| ||||||||||||| |||| |||||||||||||| ||||||||||||||||||| |
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|
| T |
2829148 |
gtaactctttctggtttgttgaattttattgatgggatttggtctgcatgtggaggagagaggatcataattttcacaacaaattttgtggacaaacttg |
2829247 |
T |
|
| Q |
184 |
atcctgctctaattaggaggggaaggatggataaacacatagaaatgtcctattgtagatatcaagcgttcaaggttcttgctaagaactacttggatgt |
283 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| || ||||||||||| |||||||| |||||||| |||||||| ||||| |||||||| | |||||| |
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|
| T |
2829248 |
atcctgccctaattaggaggggaaggatggataagcatatagaaatgtcttattgtagctatcaagctttcaaggtgcttgcaaagaactattgggatgt |
2829347 |
T |
|
| Q |
284 |
tgagtctcatggtgattt |
301 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
2829348 |
tgagtctcatgatgattt |
2829365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 92 - 301
Target Start/End: Complemental strand, 2909764 - 2909556
Alignment:
| Q |
92 |
ttcgggtttgttgaattctattgatggaatttggtcatcatgtggaggagaacggataataattttcacaactaattttgtggacaaacttgatcctgct |
191 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2909764 |
ttcgggtttgttgaattttattgatggaatttggtcaacatgtggaggagaaaggatcataattt-cacaactaattttgtggacaaacttgatcctgct |
2909666 |
T |
|
| Q |
192 |
ctaattaggaggggaaggatggataaacacatagaaatgtcctattgtagatatcaagcgttcaaggttcttgctaagaactacttggatgttgagtctc |
291 |
Q |
| |
|
|| || ||||||||||||||||||| ||||| ||||||||||||||||| ||||||| ||||||| | ||||| ||||||||||| ||||||||||||| |
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|
| T |
2909665 |
cttataaggaggggaaggatggatatgcacattgaaatgtcctattgtagctatcaagtgttcaagatgcttgcaaagaactacttagatgttgagtctc |
2909566 |
T |
|
| Q |
292 |
atggtgattt |
301 |
Q |
| |
|
||| |||||| |
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|
| T |
2909565 |
atgatgattt |
2909556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 84 - 301
Target Start/End: Complemental strand, 2833066 - 2832849
Alignment:
| Q |
84 |
gtaactctttcgggtttgttgaattctattgatggaatttggtcatcatgtggaggagaacggataataattttcacaactaattttgtggacaaacttg |
183 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||||||| |||||||| ||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2833066 |
gtaactctttctggtttgttgaatttcattgatggaatttggtcagcatgtggatcagagaggataataattttcacaacaaattttgtggacaaacttg |
2832967 |
T |
|
| Q |
184 |
atcctgctctaattaggaggggaaggatggataaacacatagaaatgtcctattgtagatatcaagcgttcaaggttcttgctaagaactacttggatgt |
283 |
Q |
| |
|
|||||||||| || ||||||||||| |||||||| || ||||||||||| |||||||| |||||||| |||||||||||||| | |||||||| ||||| |
|
|
| T |
2832966 |
atcctgctcttataaggaggggaagaatggataagcatatagaaatgtcttattgtagctatcaagctttcaaggttcttgcaagaaactacttagatgt |
2832867 |
T |
|
| Q |
284 |
tgagtctcatggtgattt |
301 |
Q |
| |
|
|||| |||||| |||||| |
|
|
| T |
2832866 |
tgagactcatgatgattt |
2832849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 84 - 301
Target Start/End: Original strand, 2842554 - 2842771
Alignment:
| Q |
84 |
gtaactctttcgggtttgttgaattctattgatggaatttggtcatcatgtggaggagaacggataataattttcacaactaattttgtggacaaacttg |
183 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||| |||| |||||||||||||||||||||||||| ||||||| |
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|
| T |
2842554 |
gtaactctttcgggtttgttgaattttattgatggaatttggtcagcatgtggatcagagaggatcataattttcacaactaattttgtggataaacttg |
2842653 |
T |
|
| Q |
184 |
atcctgctctaattaggaggggaaggatggataaacacatagaaatgtcctattgtagatatcaagcgttcaaggttcttgctaagaactacttggatgt |
283 |
Q |
| |
|
|||||||||| || ||||| ||||| |||||||| || ||||||||||| |||||||| |||||||| || ||||||||||| | |||||||| ||||| |
|
|
| T |
2842654 |
atcctgctcttataaggagaggaagaatggataagcatatagaaatgtcttattgtagctatcaagcttttaaggttcttgcaagaaactacttagatgt |
2842753 |
T |
|
| Q |
284 |
tgagtctcatggtgattt |
301 |
Q |
| |
|
||||| ||||| |||||| |
|
|
| T |
2842754 |
tgagtttcatgatgattt |
2842771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 84 - 294
Target Start/End: Original strand, 14578259 - 14578469
Alignment:
| Q |
84 |
gtaactctttcgggtttgttgaattctattgatggaatttggtcatcatgtggaggagaacggataataattttcacaactaattttgtggacaaacttg |
183 |
Q |
| |
|
||||||||||| ||||||||||||| ||| |||||||||||||| |||||||||||||| |||| |||||||||||||| || |||||||| ||||||| |
|
|
| T |
14578259 |
gtaactctttctggtttgttgaattttatcgatggaatttggtcggcatgtggaggagaaaggatcataattttcacaaccaactttgtggataaacttg |
14578358 |
T |
|
| Q |
184 |
atcctgctctaattaggaggggaaggatggataaacacatagaaatgtcctattgtagatatcaagcgttcaaggttcttgctaagaactacttggatgt |
283 |
Q |
| |
|
||| |||||| |||||||||||||||||||||| || || |||||||| |||||||| ||| |||| ||||| || ||||| ||||| || | |||||| |
|
|
| T |
14578359 |
atcatgctcttattaggaggggaaggatggatatgcatattgaaatgtcatattgtagctatgaagcattcaaagtgcttgcaaagaattattgggatgt |
14578458 |
T |
|
| Q |
284 |
tgagtctcatg |
294 |
Q |
| |
|
||||||||||| |
|
|
| T |
14578459 |
tgagtctcatg |
14578469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 96 - 289
Target Start/End: Original strand, 1801152 - 1801345
Alignment:
| Q |
96 |
ggtttgttgaattctattgatggaatttggtcatcatgtggaggagaacggataataattttcacaactaattttgtggacaaacttgatcctgctctaa |
195 |
Q |
| |
|
||||| ||||||| |||||||||||||||||| | |||||||| || |||| ||||||||||| || ||||||||||| ||||||||||| ||||| | |
|
|
| T |
1801152 |
ggtttattgaattttattgatggaatttggtccgcgtgtggaggggagaggattataattttcacgacgaattttgtggagaaacttgatccagctctta |
1801251 |
T |
|
| Q |
196 |
ttaggaggggaaggatggataaacacatagaaatgtcctattgtagatatcaagcgttcaaggttcttgctaagaactacttggatgttgagtc |
289 |
Q |
| |
|
|||||| |||||||||||||||||| | || | || |||||| | | | |||| || |||||||||| |||||| || |||||| ||||||| |
|
|
| T |
1801252 |
ttaggacaggaaggatggataaacacgttgagttatcttattgttgttttgaagcttttaaggttcttgttaagaattatttggatattgagtc |
1801345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 180 - 250
Target Start/End: Original strand, 6318517 - 6318587
Alignment:
| Q |
180 |
cttgatcctgctctaattaggaggggaaggatggataaacacatagaaatgtcctattgtagatatcaagc |
250 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||| ||||||||||||| |||||||| |||||||| |
|
|
| T |
6318517 |
cttgatcctgctctcatcaggaggggaaggatggataagaacatagaaatgtcttattgtagctatcaagc |
6318587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 241
Target Start/End: Original strand, 44396419 - 44396558
Alignment:
| Q |
102 |
ttgaattctattgatggaatttggtcatcatgtggaggagaacggataataattttcacaactaattttgtggacaaacttgatcctgctctaattagga |
201 |
Q |
| |
|
||||||| |||||||| || |||||| | |||||||| ||| || |||| |||||||||| |||| |||||| || ||||||||||| || || |||| |
|
|
| T |
44396419 |
ttgaatttcattgatggtatatggtcagcttgtggaggtgaaaggttaattgttttcacaacaaattatgtggagaagcttgatcctgcacttataagga |
44396518 |
T |
|
| Q |
202 |
ggggaaggatggataaacacatagaaatgtcctattgtag |
241 |
Q |
| |
|
|||| || ||||| ||||| || ||| | || |||||||| |
|
|
| T |
44396519 |
ggggtagaatggacaaacatattgaactttcttattgtag |
44396558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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