View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19390_high_10 (Length: 283)
Name: NF19390_high_10
Description: NF19390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19390_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 16 - 267
Target Start/End: Complemental strand, 49124029 - 49123778
Alignment:
| Q |
16 |
caaacttcaatgccaaggtaaaaaactgaatttactatatattttatcttcttccacaaagtattttattcaccaaagtttcttatcaattgacacccac |
115 |
Q |
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| T |
49124029 |
caaacttcaatgccaaggtaaaaaactgaatttactatatattttatcttcttccacaaagtattttattcaccaaagtttcttatcaattgacacccac |
49123930 |
T |
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| Q |
116 |
ccacgtacttattggcggtggattcagctctctgattttggtctgtccataattgatgggtcccaaaagaagaacatcaaggtttcaggaacattgggat |
215 |
Q |
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| T |
49123929 |
ccacgtactaattggcggtggattcagctctctgattttggtctgtccataattgatgggtcccaaaagaagaacatcaaggtttcaggaacattgggat |
49123830 |
T |
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| Q |
216 |
acgtagccccagaatatcttttagatggtaatgccaactaaacttgttatta |
267 |
Q |
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| T |
49123829 |
acgtagccccagaatatcttttagatggtaatgccaactaaacttgttatta |
49123778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 132 - 245
Target Start/End: Original strand, 4271627 - 4271743
Alignment:
| Q |
132 |
ggtggattcagctctctgattttggtctgtccataattgatgggtcccaaaagaagaa---catcaaggtttcaggaacattgggatacgtagccccaga |
228 |
Q |
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| T |
4271627 |
ggtgaattcagctttctgattttggtcttgcaataactgatgggtcccagaacaagaataacatcaagctttcaggcacattggggtatgttgccccaga |
4271726 |
T |
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| Q |
229 |
atatcttttagatggta |
245 |
Q |
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| T |
4271727 |
gtatcttttagatggta |
4271743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 132 - 245
Target Start/End: Original strand, 2807971 - 2808087
Alignment:
| Q |
132 |
ggtggattcagctctctgattttggtctgtccataattgatgggtcccaaaagaagaa---catcaaggtttcaggaacattgggatacgtagccccaga |
228 |
Q |
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|||| |||||||| |||||||||||||| | |||| ||||||||||||||| ||||| ||||||| ||||||| |||||||| || || ||||| || |
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| T |
2807971 |
ggtgaattcagctttctgattttggtcttgcaataactgatgggtcccaaaacaagaataacatcaagctttcaggcacattggggtatgttgccccgga |
2808070 |
T |
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| Q |
229 |
atatcttttagatggta |
245 |
Q |
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|||||||||||||||| |
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| T |
2808071 |
gtatcttttagatggta |
2808087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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