View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19390_high_11 (Length: 275)
Name: NF19390_high_11
Description: NF19390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19390_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 45 - 259
Target Start/End: Complemental strand, 24782571 - 24782357
Alignment:
| Q |
45 |
agcatcttaaaaaattatagtgttgacttaaacaaaactcaatatttaatactaaataattactcatatgaactatgaaaggggcatagtggtccaaata |
144 |
Q |
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| T |
24782571 |
agcatcttaaaaaactatagtgttgacttaaacaaaactcaatatttaatactaaataattactcatatgaactatgaaaggggcatagtggtccaaata |
24782472 |
T |
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| Q |
145 |
ccccaaaacttaacattataaaaccaccatatgaggagccctaactttcatgcatgcacacacacacctcaacattttcacattcccttcataaaccatg |
244 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24782471 |
ccccataacttaacattataaaaccaccatatgaggagccctaagtttcatgcatgcacacacacacctcaacattttcacattcccttcataaaccatg |
24782372 |
T |
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| Q |
245 |
ttttcaccattaacg |
259 |
Q |
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||||||||||||||| |
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| T |
24782371 |
ttttcaccattaacg |
24782357 |
T |
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