View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19390_high_13 (Length: 245)

Name: NF19390_high_13
Description: NF19390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19390_high_13
NF19390_high_13
[»] chr1 (9 HSPs)
chr1 (18-245)||(9495400-9495627)
chr1 (42-245)||(10992901-10993104)
chr1 (51-245)||(10930706-10930900)
chr1 (42-245)||(10906816-10907017)
chr1 (72-245)||(11041090-11041263)
chr1 (72-241)||(11026387-11026556)
chr1 (180-244)||(9378002-9378066)
chr1 (87-236)||(9337729-9337878)
chr1 (180-244)||(9236167-9236231)


Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 9495400 - 9495627
Alignment:
Q  18 catcaaggatgtgaccagaggatacttcactttgatataaaacctcataatatcttacttgacaataacttcactcccaagatatctgattttggtctgg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9495400 catcaaggatgtgaccagaggatacttcactttgatataaaacctcataatatcttacttgacaataacttcactcccaagatatctgattttggtctgg 9495499  T
Q  118 ctaagctttgttcaaaggatcaaagtgcggtttccatgaccgcggctagggggactattggttacatagcaccagaagttttctctaggaactttggaaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9495500 ctaagctttgttcaaaggatcaaagtgcggtttccatgaccgcggctagggggactattggttacatagcaccagaagttttctctaggaactttggaaa 9495599  T
Q  218 tgtgtcgtacaagtctgatgtttatagt 245  Q
    ||||||||||||||||||||||||||||    
T  9495600 tgtgtcgtacaagtctgatgtttatagt 9495627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 42 - 245
Target Start/End: Original strand, 10992901 - 10993104
Alignment:
Q  42 cttcactttgatataaaacctcataatatcttacttgacaataacttcactcccaagatatctgattttggtctggctaagctttgttcaaaggatcaaa 141  Q
    ||||| |||||||| ||||| || ||| | ||||||||| ||||||||| ||| || |||||||| |||||||| |||||  | ||||||| ||| ||||    
T  10992901 cttcattttgatatcaaaccacaaaatgtgttacttgaccataacttcattccaaaaatatctgactttggtctagctaaattatgttcaagggaccaaa 10993000  T
Q  142 gtgcggtttccatgaccgcggctagggggactattggttacatagcaccagaagttttctctaggaactttggaaatgtgtcgtacaagtctgatgttta 241  Q
    | |  ||||| |||||||| ||||| || ||  | || ||||| || ||||||||||| || |||||||||||||||||||| ||||| || ||||||||    
T  10993001 gcgtagtttcaatgaccgcagctagaggaacattggggtacattgctccagaagttttttcaaggaactttggaaatgtgtcttacaaatcagatgttta 10993100  T
Q  242 tagt 245  Q
    ||||    
T  10993101 tagt 10993104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 51 - 245
Target Start/End: Original strand, 10930706 - 10930900
Alignment:
Q  51 gatataaaacctcataatatcttacttgacaataacttcactcccaagatatctgattttggtctggctaagctttgttcaaaggatcaaagtgcggttt 150  Q
    ||||| ||||| || ||| | ||||||||| ||||||| | ||| ||||||||||| |||||||| |||||  | ||||||| ||| |||||    || |    
T  10930706 gatatcaaaccacaaaatgtgttacttgaccataactttattccaaagatatctgactttggtctagctaaattatgttcaagggaccaaagcatagtgt 10930805  T
Q  151 ccatgaccgcggctagggggactattggttacatagcaccagaagttttctctaggaactttggaaatgtgtcgtacaagtctgatgtttatagt 245  Q
    | ||||| || ||||| || ||| | || ||||| || |||||||||||||| |||||||||||||||||||| ||||| || ||||||||||||    
T  10930806 caatgacagcagctagaggaactttgggctacattgctccagaagttttctcaaggaactttggaaatgtgtcttacaaatcagatgtttatagt 10930900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 245
Target Start/End: Original strand, 10906816 - 10907017
Alignment:
Q  42 cttcactttgatataaaacctcataatatcttacttgacaataacttcactcccaagatatctgattttggtctggctaagctttgttcaaaggatcaaa 141  Q
    ||||| |||||||| ||||| || ||| | ||||||||| |||||||   ||| || |||||||| |||||||| |||||  | ||||||| ||| ||||    
T  10906816 cttcattttgatatcaaaccacaaaatgtgttacttgaccataacttt--tccaaaaatatctgactttggtctagctaaattatgttcaagggaccaaa 10906913  T
Q  142 gtgcggtttccatgaccgcggctagggggactattggttacatagcaccagaagttttctctaggaactttggaaatgtgtcgtacaagtctgatgttta 241  Q
    | |  ||||| |||||||| ||||| || ||  | || ||||| || ||||||||||| || |||||||||||||||||||| ||||| || ||||||||    
T  10906914 gcgtagtttcaatgaccgcagctagaggaacattggggtacattgctccagaagttttttcaaggaactttggaaatgtgtcttacaaatcagatgttta 10907013  T
Q  242 tagt 245  Q
    ||||    
T  10907014 tagt 10907017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 72 - 245
Target Start/End: Original strand, 11041090 - 11041263
Alignment:
Q  72 ttacttgacaataacttcactcccaagatatctgattttggtctggctaagctttgttcaaaggatcaaagtgcggtttccatgaccgcggctaggggga 171  Q
    ||||||||| | ||||| | ||| || |||| |||||||||||| |||||  | ||||||| |||||| ||    || || |||||||||||||| || |    
T  11041090 ttacttgaccacaactttattccaaaaatatgtgattttggtctagctaaattatgttcaagggatcagagcatagtgtcaatgaccgcggctagaggaa 11041189  T
Q  172 ctattggttacatagcaccagaagttttctctaggaactttggaaatgtgtcgtacaagtctgatgtttatagt 245  Q
    || | || ||||| || ||||||||||| || |||||||||||||| ||||| | ||| || ||||||||||||    
T  11041190 ctttgggctacattgctccagaagttttttcaaggaactttggaaacgtgtctttcaaatcggatgtttatagt 11041263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 241
Target Start/End: Original strand, 11026387 - 11026556
Alignment:
Q  72 ttacttgacaataacttcactcccaagatatctgattttggtctggctaagctttgttcaaaggatcaaagtgcggtttccatgaccgcggctaggggga 171  Q
    ||||||||| ||||||| | ||| || |||||||| |||||||| |||||  | ||||||| |||||| ||    || || ||||| || ||||| || |    
T  11026387 ttacttgaccataactttattccaaaaatatctgactttggtctagctaaattatgttcaagggatcagagcatagtatcaatgactgcagctagaggaa 11026486  T
Q  172 ctattggttacatagcaccagaagttttctctaggaactttggaaatgtgtcgtacaagtctgatgttta 241  Q
    |  | || ||||| || ||||||||||| || |||||||| ||||||||||| ||||| || ||||||||    
T  11026487 cattggggtacattgctccagaagttttttcaaggaacttcggaaatgtgtcttacaaatcagatgttta 11026556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 244
Target Start/End: Original strand, 9378002 - 9378066
Alignment:
Q  180 tacatagcaccagaagttttctctaggaactttggaaatgtgtcgtacaagtctgatgtttatag 244  Q
    ||||| ||||| ||||||||||| || ||||| |||||||| || |||||||||||| |||||||    
T  9378002 tacattgcacctgaagttttctcaagaaacttcggaaatgtttcttacaagtctgatatttatag 9378066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 236
Target Start/End: Original strand, 9337729 - 9337878
Alignment:
Q  87 ttcactcccaagatatctgattttggtctggctaagctttgttcaaaggatcaaagtgcggtttccatgaccgcggctagggggactattggttacatag 186  Q
    ||||||||||| ||  | ||||||||| |||| ||| | ||||||||  |||||||||  || |||||||| || |||| ||| ||  | || ||||| |    
T  9337729 ttcactcccaaaattacagattttggtttggccaagatatgttcaaaaaatcaaagtgtcgtatccatgactgcagctaagggaacattaggctacatgg 9337828  T
Q  187 caccagaagttttctctaggaactttggaaatgtgtcgtacaagtctgat 236  Q
    |||| |||||||| || || |||||||| ||||| || || |||||||||    
T  9337829 cacctgaagttttttcaagaaactttggtaatgtctcttataagtctgat 9337878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 244
Target Start/End: Complemental strand, 9236231 - 9236167
Alignment:
Q  180 tacatagcaccagaagttttctctaggaactttggaaatgtgtcgtacaagtctgatgtttatag 244  Q
    ||||| ||||| ||||||||||| || ||||| |||||||| || || ||||||||| |||||||    
T  9236231 tacattgcacctgaagttttctcgagaaacttcggaaatgtttcttataagtctgatatttatag 9236167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University