View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19390_high_14 (Length: 227)
Name: NF19390_high_14
Description: NF19390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19390_high_14 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 55889573 - 55889353
Alignment:
| Q |
7 |
cccacaagcattgagaaccgaagagaatgtgaaaccagacggcaaaatccctttttggtgcattatagcgaaggtggaaatgcaatggcgaaaatgagtg |
106 |
Q |
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| T |
55889573 |
cccacaagcattgagaaccgaagagaatgtgaaaccagacggcaaaatccctttttggtgcattatagcgaaggtggaaatgcaatggcgaaaatgagtg |
55889474 |
T |
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| Q |
107 |
tgatgggaaaggaatgcgcgaatgagagaagtccaaatgaagcaattggagcagtttggcattgtatcaaacagtttgtgggcatagtaaagattggatt |
206 |
Q |
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| T |
55889473 |
tgatgggaaaggaatgcgcgaatgagagaagtccaaatgaaacaattggagcagtttggcattgtatcaaacagtttgtgggcatagtaaagattggatt |
55889374 |
T |
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| Q |
207 |
tttcagcactgaagtggagaa |
227 |
Q |
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| T |
55889373 |
tttcagcactgaagtggagaa |
55889353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 1032332 - 1032552
Alignment:
| Q |
7 |
cccacaagcattgagaaccgaagagaatgtgaaaccagacggcaaaatccctttttggtgcattatagcgaaggtggaaatgcaatggcgaaaatgagtg |
106 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
1032332 |
cccacaagcattgagaaccaaagagaatgtgaaaccagacggcaaaatccctttttggtgcattctagcgaaggtggaaatgcaatggcaaaaatgagtg |
1032431 |
T |
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| Q |
107 |
tgatgggaaaggaatgcgcgaatgagagaagtccaaatgaagcaattggagcagtttggcattgtatcaaacagtttgtgggcatagtaaagattggatt |
206 |
Q |
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| T |
1032432 |
tgatgggaaaggaatgcgcgaatgagagaagtccaaatgaagcaattggagcagtttggcattgtatcaaacagtttgtgggcatagtaaagattggatt |
1032531 |
T |
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| Q |
207 |
tttcagcactgaagtggagaa |
227 |
Q |
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| T |
1032532 |
tttcagcactgaagtggagaa |
1032552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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