View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19390_high_4 (Length: 516)
Name: NF19390_high_4
Description: NF19390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19390_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Complemental strand, 40182013 - 40181507
Alignment:
| Q |
1 |
ataaagaagaaaggcttaatcgctactcaattttactttgccaagcttattgaggctgttcctatgtagtgagtccagaggattcagaggtaagttttgc |
100 |
Q |
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| T |
40182013 |
ataaagaagaaaggcttaatcgctactcaattttactttgccaagcttattgaggctgttcctatgtagtgagtccagaggattcagaggtaagttttgc |
40181914 |
T |
|
| Q |
101 |
atcattagaggaaattcctaatgtatattgtaagccannnnnnngtgcttttgcatgctatgttatcctatgatcccctggatatgtatattatattcct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40181913 |
atcattagaggaaattcctaatgtatattgtaagccatttttttgtgcttttgcatgctatgttatcctatgatcccctggatatgtatattatattcct |
40181814 |
T |
|
| Q |
201 |
tcttag---aaat--tcctgatgtattgttttttattttgtaatatgaaacggaaagaataccaaatttgaaactagatgccagttgatgcatcaattat |
295 |
Q |
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|||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40181813 |
tcttagcgtaaacgatgctgatgtattgttttttattttgtaatatgaaacggaaagaataccaaatttgaaactagatgccagttgatgcatcaattat |
40181714 |
T |
|
| Q |
296 |
atttattttgctacttccttgggtgatgaattttctgccttttattatcattgcgtgttctcaaaatgtcaaggtgttttcatatttatgtaatttgtaa |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40181713 |
atttattttgctacttccttgggtgatgaattttctgccttttattatcattgcgtgttctcaaaatgtcaaggtgttttcaaatttatgtaatttgtaa |
40181614 |
T |
|
| Q |
396 |
cacgattaggtaagtattataaccaaagcaaaaatagtttttccgtgatctggaacttgaggaaannnnnnnacagaaacattatctgaacatcaattta |
495 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
40181613 |
cacgattaggtaagtattataaccaaagcataaatagtttttccatgatctggaacttgaggaaa-aaaattacagaaacattatctgaacatcaattta |
40181515 |
T |
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| Q |
496 |
agacccct |
503 |
Q |
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|||||||| |
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| T |
40181514 |
agacccct |
40181507 |
T |
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