View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19390_low_1 (Length: 684)

Name: NF19390_low_1
Description: NF19390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19390_low_1
NF19390_low_1
[»] chr8 (31 HSPs)
chr8 (1-489)||(28618610-28619099)
chr8 (580-665)||(28617354-28617439)
chr8 (127-367)||(41151499-41151741)
chr8 (121-359)||(6220285-6220523)
chr8 (217-368)||(27127966-27128119)
chr8 (110-367)||(20209354-20209611)
chr8 (110-367)||(20229062-20229319)
chr8 (190-274)||(14895132-14895216)
chr8 (1-72)||(5965455-5965526)
chr8 (125-295)||(27052565-27052730)
chr8 (185-257)||(16913000-16913073)
chr8 (217-274)||(20209352-20209409)
chr8 (217-274)||(20229060-20229117)
chr8 (110-274)||(41151391-41151554)
chr8 (311-386)||(24827432-24827508)
chr8 (1-72)||(24198973-24199044)
chr8 (219-274)||(27128063-27128118)
chr8 (311-387)||(20209446-20209523)
chr8 (311-387)||(20229154-20229231)
chr8 (295-387)||(36053017-36053110)
chr8 (1-50)||(5736903-5736952)
chr8 (1-66)||(5738036-5738101)
chr8 (217-274)||(9399908-9399964)
chr8 (218-274)||(9400014-9400071)
chr8 (225-274)||(14895020-14895069)
chr8 (218-271)||(36053038-36053091)
chr8 (249-277)||(14550122-14550150)
chr8 (299-386)||(15564016-15564103)
chr8 (104-152)||(20057061-20057109)
chr8 (184-243)||(24909683-24909743)
chr8 (104-160)||(45215444-45215500)
[»] chr4 (42 HSPs)
chr4 (219-368)||(24684142-24684292)
chr4 (126-387)||(40395101-40395362)
chr4 (128-385)||(12498623-12498881)
chr4 (126-387)||(41083056-41083317)
chr4 (218-387)||(11884690-11884859)
chr4 (126-295)||(45038343-45038511)
chr4 (159-385)||(53863393-53863622)
chr4 (126-303)||(7246182-7246359)
chr4 (126-274)||(11884617-11884765)
chr4 (219-274)||(12592273-12592328)
chr4 (214-280)||(9999378-9999444)
chr4 (127-277)||(40146955-40147103)
chr4 (126-274)||(41083242-41083389)
chr4 (103-171)||(17231967-17232034)
chr4 (219-274)||(17232022-17232077)
chr4 (1-68)||(26172955-26173022)
chr4 (219-274)||(45787222-45787277)
chr4 (169-293)||(24369233-24369358)
chr4 (311-387)||(24369250-24369327)
chr4 (158-266)||(44057260-44057367)
chr4 (126-293)||(2469901-2470065)
chr4 (311-386)||(12592376-12592452)
chr4 (190-257)||(50290403-50290471)
chr4 (219-274)||(26782481-26782536)
chr4 (219-274)||(51950564-51950619)
chr4 (311-370)||(55617538-55617597)
chr4 (311-370)||(55624842-55624901)
chr4 (311-385)||(2469975-2470048)
chr4 (110-243)||(2470127-2470259)
chr4 (105-234)||(21321998-21322126)
chr4 (175-280)||(53863366-53863472)
chr4 (219-272)||(2787979-2788032)
chr4 (124-236)||(2788120-2788231)
chr4 (159-243)||(7246026-7246110)
chr4 (331-387)||(12498886-12498943)
chr4 (311-387)||(26782479-26782556)
chr4 (331-387)||(45038442-45038499)
chr4 (311-387)||(45787097-45787174)
chr4 (320-387)||(41519215-41519283)
chr4 (221-273)||(41519237-41519289)
chr4 (321-385)||(44057260-44057324)
chr4 (1-73)||(47874602-47874674)
[»] chr5 (46 HSPs)
chr5 (123-387)||(25456349-25456612)
chr5 (126-386)||(35461511-35461771)
chr5 (218-367)||(37642888-37643038)
chr5 (126-367)||(28559237-28559479)
chr5 (169-385)||(10827150-10827366)
chr5 (126-387)||(16327172-16327432)
chr5 (126-282)||(1996144-1996299)
chr5 (249-387)||(20927919-20928058)
chr5 (110-274)||(16327084-16327247)
chr5 (249-369)||(4943022-4943145)
chr5 (202-387)||(14604139-14604327)
chr5 (159-274)||(20927879-20927994)
chr5 (159-274)||(12713073-12713190)
chr5 (159-274)||(12774337-12774454)
chr5 (295-387)||(5746277-5746370)
chr5 (175-274)||(25456324-25456424)
chr5 (110-328)||(17400678-17400898)
chr5 (178-366)||(33491564-33491754)
chr5 (255-339)||(12713014-12713099)
chr5 (255-339)||(12774278-12774363)
chr5 (311-387)||(16327285-16327362)
chr5 (219-274)||(7209882-7209937)
chr5 (190-241)||(13170002-13170053)
chr5 (219-274)||(37642888-37642943)
chr5 (219-274)||(4943087-4943143)
chr5 (104-160)||(7933248-7933304)
chr5 (158-274)||(23661912-23662026)
chr5 (158-274)||(23796544-23796658)
chr5 (1-72)||(546049-546120)
chr5 (313-387)||(25456463-25456538)
chr5 (1-72)||(28591127-28591198)
chr5 (219-274)||(35187994-35188049)
chr5 (105-274)||(35461417-35461585)
chr5 (127-293)||(35813468-35813632)
chr5 (311-387)||(1996216-1996293)
chr5 (1-66)||(2464714-2464779)
chr5 (311-387)||(7209862-7209939)
chr5 (331-387)||(16327112-16327169)
chr5 (159-274)||(17400579-17400693)
chr5 (158-243)||(37032918-37033002)
chr5 (311-367)||(37642980-37643037)
chr5 (311-387)||(38682791-38682868)
chr5 (218-274)||(10827293-10827349)
chr5 (190-257)||(23662144-23662212)
chr5 (313-384)||(35811982-35812054)
chr5 (223-283)||(35813386-35813446)
[»] chr3 (44 HSPs)
chr3 (190-367)||(36374897-36375074)
chr3 (219-387)||(40209749-40209918)
chr3 (126-387)||(47069530-47069792)
chr3 (177-387)||(47573769-47573981)
chr3 (158-293)||(43650017-43650152)
chr3 (125-306)||(252047-252227)
chr3 (169-282)||(32186653-32186767)
chr3 (219-358)||(14624149-14624290)
chr3 (190-274)||(28813901-28813986)
chr3 (218-274)||(47891308-47891364)
chr3 (320-387)||(47573891-47573958)
chr3 (219-329)||(14964923-14965032)
chr3 (219-339)||(26724104-26724225)
chr3 (314-367)||(36374992-36375045)
chr3 (159-266)||(25848321-25848428)
chr3 (249-361)||(45131532-45131647)
chr3 (219-309)||(13902956-13903047)
chr3 (249-367)||(18019946-18020065)
chr3 (1-72)||(20464108-20464179)
chr3 (314-387)||(252120-252194)
chr3 (1-66)||(48574472-48574537)
chr3 (192-368)||(54343349-54343525)
chr3 (218-274)||(50332526-50332582)
chr3 (221-367)||(50332527-50332674)
chr3 (1-72)||(19114572-19114643)
chr3 (159-243)||(30954964-30955049)
chr3 (159-243)||(30970776-30970861)
chr3 (218-293)||(36667249-36667324)
chr3 (295-387)||(40286419-40286510)
chr3 (192-245)||(43649990-43650044)
chr3 (1-51)||(47118064-47118114)
chr3 (1-66)||(17701932-17701997)
chr3 (126-274)||(18020010-18020157)
chr3 (190-238)||(25848291-25848340)
chr3 (158-274)||(25848486-25848602)
chr3 (305-385)||(26724086-26724167)
chr3 (221-274)||(26976412-26976465)
chr3 (159-274)||(40286437-40286550)
chr3 (217-274)||(46337594-46337651)
chr3 (331-387)||(47891123-47891180)
chr3 (219-272)||(54343350-54343402)
chr3 (2-30)||(33427832-33427860)
chr3 (159-274)||(36900062-36900177)
chr3 (1-73)||(48573023-48573095)
[»] scaffold0157 (2 HSPs)
scaffold0157 (128-385)||(21596-21854)
scaffold0157 (331-387)||(21534-21591)
[»] chr7 (35 HSPs)
chr7 (87-303)||(42312722-42312938)
chr7 (110-367)||(44293866-44294123)
chr7 (219-385)||(43258338-43258515)
chr7 (184-387)||(6694605-6694809)
chr7 (174-274)||(3198259-3198360)
chr7 (330-387)||(6222094-6222151)
chr7 (158-274)||(11975480-11975596)
chr7 (217-274)||(44293864-44293921)
chr7 (126-273)||(27576520-27576666)
chr7 (110-280)||(6694517-6694685)
chr7 (1-72)||(10899086-10899157)
chr7 (219-274)||(29019342-29019397)
chr7 (219-293)||(4048382-4048456)
chr7 (126-274)||(29710508-29710655)
chr7 (190-274)||(40951832-40951917)
chr7 (311-387)||(44293958-44294035)
chr7 (159-274)||(4048236-4048351)
chr7 (159-274)||(22750350-22750465)
chr7 (126-198)||(31453047-31453117)
chr7 (249-329)||(41666268-41666348)
chr7 (311-386)||(43258319-43258395)
chr7 (313-367)||(6694718-6694773)
chr7 (1-72)||(8375596-8375667)
chr7 (1-72)||(39708142-39708213)
chr7 (1-64)||(48777303-48777366)
chr7 (294-387)||(22750390-22750484)
chr7 (158-243)||(42313010-42313095)
chr7 (126-171)||(6069292-6069336)
chr7 (1-50)||(12669868-12669917)
chr7 (1-50)||(13578333-13578382)
chr7 (126-238)||(29710322-29710433)
chr7 (311-387)||(40951830-40951907)
chr7 (7-72)||(44333178-44333243)
chr7 (1-73)||(5930146-5930217)
chr7 (1-73)||(48647456-48647528)
[»] chr6 (23 HSPs)
chr6 (126-367)||(21598447-21598689)
chr6 (126-274)||(21598634-21598781)
chr6 (104-274)||(17136824-17136993)
chr6 (175-340)||(9982719-9982885)
chr6 (293-387)||(24059739-24059834)
chr6 (180-274)||(2761590-2761685)
chr6 (218-367)||(17342534-17342685)
chr6 (219-340)||(2761495-2761617)
chr6 (218-295)||(35050629-35050706)
chr6 (104-274)||(10356450-10356619)
chr6 (126-238)||(10356263-10356374)
chr6 (223-386)||(13273163-13273328)
chr6 (126-274)||(35225400-35225547)
chr6 (201-261)||(364199-364259)
chr6 (127-274)||(13273254-13273399)
chr6 (219-270)||(364079-364130)
chr6 (219-274)||(31091261-31091315)
chr6 (295-387)||(364060-364152)
chr6 (311-387)||(21598519-21598596)
chr6 (311-367)||(35050630-35050687)
chr6 (190-274)||(35225597-35225682)
chr6 (33-73)||(24621115-24621155)
chr6 (4-72)||(31218994-31219062)
[»] chr2 (32 HSPs)
chr2 (103-387)||(36694292-36694577)
chr2 (218-368)||(31630158-31630319)
chr2 (159-274)||(31630264-31630377)
chr2 (126-274)||(5009362-5009507)
chr2 (184-387)||(25894963-25895179)
chr2 (126-274)||(44556527-44556674)
chr2 (285-387)||(44556599-44556703)
chr2 (123-274)||(5009157-5009312)
chr2 (249-339)||(8035393-8035484)
chr2 (103-274)||(14166377-14166545)
chr2 (104-274)||(25895104-25895273)
chr2 (126-243)||(36217163-36217276)
chr2 (110-274)||(9500891-9501054)
chr2 (311-367)||(9500999-9501056)
chr2 (1-50)||(38985002-38985051)
chr2 (159-387)||(39442268-39442495)
chr2 (320-387)||(12612460-12612528)
chr2 (219-274)||(8035458-8035513)
chr2 (219-274)||(11791787-11791842)
chr2 (1-72)||(31091540-31091611)
chr2 (1-72)||(32766252-32766323)
chr2 (311-364)||(4511868-4511922)
chr2 (1-51)||(17466841-17466891)
chr2 (126-266)||(1316037-1316176)
chr2 (295-387)||(3876908-3877001)
chr2 (220-277)||(4188657-4188714)
chr2 (190-274)||(4189001-4189086)
chr2 (1-66)||(17466086-17466151)
chr2 (295-366)||(4188657-4188729)
chr2 (295-386)||(11791769-11791861)
chr2 (219-286)||(39442407-39442474)
chr2 (104-152)||(42847351-42847399)
[»] scaffold0018 (2 HSPs)
scaffold0018 (126-361)||(161406-161642)
scaffold0018 (159-274)||(161593-161708)
[»] chr1 (22 HSPs)
chr1 (249-386)||(26879524-26879663)
chr1 (190-293)||(2633209-2633313)
chr1 (177-386)||(18608629-18608841)
chr1 (305-368)||(1173104-1173167)
chr1 (1-72)||(32665783-32665854)
chr1 (3-73)||(3117687-3117757)
chr1 (2-64)||(25037925-25037987)
chr1 (2-64)||(25043137-25043199)
chr1 (216-274)||(41007461-41007519)
chr1 (126-238)||(7489961-7490072)
chr1 (330-387)||(18981005-18981062)
chr1 (110-274)||(26879589-26879752)
chr1 (126-274)||(40892488-40892634)
chr1 (159-293)||(52913173-52913308)
chr1 (1-72)||(7944194-7944265)
chr1 (311-387)||(33650586-33650664)
chr1 (219-293)||(1173105-1173178)
chr1 (1-50)||(5783122-5783171)
chr1 (331-387)||(7489913-7489970)
chr1 (1-66)||(9339691-9339756)
chr1 (1-70)||(22856721-22856790)
chr1 (221-289)||(18981086-18981154)
[»] scaffold0279 (1 HSPs)
scaffold0279 (126-273)||(1124-1270)
[»] scaffold0002 (2 HSPs)
scaffold0002 (127-274)||(12236-12377)
scaffold0002 (169-268)||(12092-12191)
[»] scaffold0128 (1 HSPs)
scaffold0128 (249-293)||(2561-2605)
[»] scaffold0039 (1 HSPs)
scaffold0039 (1-72)||(79112-79183)
[»] scaffold0578 (1 HSPs)
scaffold0578 (123-208)||(2436-2520)


Alignment Details
Target: chr8 (Bit Score: 434; Significance: 0; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 1 - 489
Target Start/End: Complemental strand, 28619099 - 28618610
Alignment:
Q  1 gactaaagtgataacgaaagtgcagagtcaatgatttcttcgtatttaatcatgggtcaaggacctttgtgatcacacgtgaaaacttgttagagtttat 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  28619099 gactaaagtgataacgaaagtgcagagtcaatgatttctttgtatttaatcatgggtcagggacctttgtgatcacacgtgaaaacttattagagtttat 28619000  T
Q  101 tcaaggctgaattacaccagatgttctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||    
T  28618999 tcaaggctgaattacaccagatgttctttaagtttgcggtttgtaacaaatatgtcattttaagttatttttcgtcacacataagtccgttaagtttacg 28618900  T
Q  201 atttgtaataaaatggtc-tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattctttttaccacatcatcttttgg 299  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28618899 atttgtaataaaatggtcctttaagttattttggtcacaaataaattttttaagtttgtaaacgttttcaatttattctttttaccacatcatcttttgg 28618800  T
Q  300 ttaatagaatcactaaatcaaaaacgtttataaacttaaagacttatttgtgactaaaataatttaaaagatgaatctattacaaaccgattatgtatgg 399  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||     
T  28618799 ttaatagaatcactaaatcaaaaacgtttataaatttaaagacttatttgtgattaaaataatttaaaagatgaatctactacaaaccgattatgtatga 28618700  T
Q  400 caaaaataattaaagactaatatgttgcaaaactcaaacttaacatatccatcgtaatttagcctttattcaatctttaactgttttggt 489  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28618699 caaaaataattaaagactaatatgttccaaaactcaaacttaacatatccatcgtaatttagcctttattcaatctttaactgttttggt 28618610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 580 - 665
Target Start/End: Complemental strand, 28617439 - 28617354
Alignment:
Q  580 cgtgaattgagggagaagaagtgcnnnnnnnacaatcgccgcgattttcttctatcaaaatcagaagctatgtgttgcggtcaaca 665  Q
    |||||||||| || ||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28617439 cgtgaattgaaggtgaagaagtgctttttttacaatcgccgcgattttcttctatcaaaatcagaagctatgtgttgcggtcaaca 28617354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 127 - 367
Target Start/End: Complemental strand, 41151741 - 41151499
Alignment:
Q  127 tttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgtt-aagtttgcgatttgtaataaaatggtc-tttaag 224  Q
    |||||||||| ||||||||||||||  ||| ||| ||||||||||  |||||||||| |||| || ||||| | | ||||||| | | ||||| ||||||    
T  41151741 tttaagtttgaggtttgtaacagattagtccttt-aagttattttg-gtcacacataagtccttttaagttcgtggtttgtaacagattggtcctttaag 41151644  T
Q  225 ttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattctttttaccacatcatc-ttttggttaatagaatcactaaatcaaaaa 323  Q
    || ||||||||||| |||| |   ||||||||||||||| ||| |||||| || || | |||||||||| |||||||||| ||||  |||||||  ||||    
T  41151643 ttcttttggtcacacataagtcctttaagtttgtaaacggtttgaatttagtcattctgccacatcatcgttttggttaacagaaggactaaattgaaaa 41151544  T
Q  324 cgtttataaacttaaa-gacttatttgtgactaaaataatttaaa 367  Q
    | |||| |||| |||| ||||||| |||||| ||||||| |||||    
T  41151543 catttacaaacataaaggacttatgtgtgaccaaaataacttaaa 41151499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 121 - 359
Target Start/End: Complemental strand, 6220523 - 6220285
Alignment:
Q  121 atgttctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggt-ct 219  Q
    |||| ||||||||||| ||||||||||| || ||    |||||||||||||| |||||||||| || | ||||||||| ||||||||| | | |||| ||    
T  6220523 atgtcctttaagtttgaggtttgtaacaaat-tggttctttaagttattttt-gtcacacataagttctttaagtttgagatttgtaacagattggtact 6220426  T
Q  220 ttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattctttttaccacatcatc-ttttggttaatagaatcactaaatc 318  Q
    |||||||||| |||||||| |||| |   |||||||| ||||||||||||||||| || || |  ||||||||| |||||||||||||||  |||||||     
T  6220425 ttaagttattgtggtcacacataagtcctttaagttt-taaacgttttcaatttagtccttctgtcacatcatcattttggttaatagaagtactaaatt 6220327  T
Q  319 aaaaacgtttataaactt--aaagacttatttgtgactaaaat 359  Q
     ||||| ||||  |||||  |||||||||| |||||| |||||    
T  6220326 gaaaacattta-caacttaaaaagacttatgtgtgacaaaaat 6220285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 217 - 368
Target Start/End: Original strand, 27127966 - 27128119
Alignment:
Q  217 tctttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattctttttaccacatcatc-ttttggttaatagaatcactaa 315  Q
    |||||||||||||||||||||| |||| |   ||||||||||||| |||||||||||| || || | |||||||||| ||| |||||| ||||| |||||    
T  27127966 tctttaagttattttggtcacacataagtcctttaagtttgtaaatgttttcaatttagtccttctgccacatcatcgtttgggttaacagaatgactaa 27128065  T
Q  316 atcaaaaacgtttataaact-taaagacttatttgtgactaaaataatttaaaa 368  Q
    ||  |||||||||| | |||  ||| |||||| |||||| ||||||| ||||||    
T  27128066 attgaaaacgtttacagactgaaaaaacttatgtgtgaccaaaataacttaaaa 27128119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 110 - 367
Target Start/End: Complemental strand, 20209611 - 20209354
Alignment:
Q  110 aattacaccagatgttctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaat 209  Q
    ||||||||||  ||| |||||| |||| ||||||||||| ||  ||| ||| || |||||||  |||||||||| |||  ||| ||||| | |||||||     
T  20209611 aattacaccacgtgtcctttaaatttgaggtttgtaacatattagtcctttaaa-ttattttg-gtcacacataagtcttttacgtttgaggtttgtaac 20209514  T
Q  210 aaaatggtc-tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattctttttaccacatcatcttttggttaatagaa 308  Q
    | | || || ||||||||||||||||||||||||| |   |||||||||||||| ||||| || || || |||||||||||||   |||||||||   ||    
T  20209513 agattgatcctttaagttattttggtcacaaataagtactttaagtttgtaaacattttcgatatagtcattttaccacatcactgtttggttaaagaaa 20209414  T
Q  309 tcactaaatcaaaaacgtttataaacttaaag-acttatttgtgactaaaataatttaaa 367  Q
      |||||||  |||| ||||| |||||||||| | ||||||||||| ||||||| |||||    
T  20209413 ggactaaatagaaaatgtttacaaacttaaagtatttatttgtgaccaaaataacttaaa 20209354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 110 - 367
Target Start/End: Complemental strand, 20229319 - 20229062
Alignment:
Q  110 aattacaccagatgttctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaat 209  Q
    ||||||||||  ||| |||||| |||| ||||||||||| ||  ||| ||| || |||||||  |||||||||| |||  ||| ||||| | |||||||     
T  20229319 aattacaccacgtgtcctttaaatttgaggtttgtaacatattagtcctttaaa-ttattttg-gtcacacataagtcttttacgtttgaggtttgtaac 20229222  T
Q  210 aaaatggtc-tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattctttttaccacatcatcttttggttaatagaa 308  Q
    | | || || ||||||||||||||||||||||||| |   |||||||||||||| ||||| || || || |||||||||||||   |||||||||   ||    
T  20229221 agattgatcctttaagttattttggtcacaaataagtactttaagtttgtaaacattttcgatatagtcattttaccacatcactgtttggttaaagaaa 20229122  T
Q  309 tcactaaatcaaaaacgtttataaacttaaag-acttatttgtgactaaaataatttaaa 367  Q
      |||||||  |||| ||||| |||||||||| | ||||||||||| ||||||| |||||    
T  20229121 ggactaaatagaaaatgtttacaaacttaaagtatttatttgtgaccaaaataacttaaa 20229062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 190 - 274
Target Start/End: Complemental strand, 14895216 - 14895132
Alignment:
Q  190 ttaagtttgcgatttgtaataaaatggtctttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
    ||||||||| | ||||||||||| |||||| |||||||| ||||  ||| ||||||   ||||||||||||||||||||||||||    
T  14895216 ttaagtttgagttttgtaataaattggtctctaagttatattggctacatataaatcctttaagtttgtaaacgttttcaattta 14895132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 5965455 - 5965526
Alignment:
Q  1 gactaaagtgataacgaaagtgcagagtcaatgatttcttcgtatttaatcatgggtcaaggacctttgtga 72  Q
    |||||||||||||||| |||||||||||||| || ||||| |||||||||| || |||| |||| |||||||    
T  5965455 gactaaagtgataacggaagtgcagagtcaaagacttctttgtatttaatcctgagtcagggacatttgtga 5965526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 295
Target Start/End: Complemental strand, 27052730 - 27052565
Alignment:
Q  125 tctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtc-tttaa 223  Q
    |||||||||||| ||||||||| |||| ||    |||||||||||||| ||| |||||| |||| ||||||||| | ||| ||| | | ||||| |||||    
T  27052730 tctttaagtttgaggtttgtaatagat-tgattctttaagttattttt-gtcgcacataagtcctttaagtttgaggtttataacagattggtcctttaa 27052633  T
Q  224 gttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattctttttaccacatcatctt 295  Q
    ||||||||| ||||| ||||     |||||||||||||| ||||| ||||| || |||| ||||||||||||    
T  27052632 gttattttgatcacacataa----tttaagtttgtaaactttttcgatttagtccttttgccacatcatctt 27052565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 185 - 257
Target Start/End: Original strand, 16913000 - 16913073
Alignment:
Q  185 gtccgttaagtttgcgatttgtaataaaatggtc-tttaagttattttggtcacaaataaatttgttaagtttg 257  Q
    |||| ||| ||||| ||||||||||||||||||| |||||||||||||| ||||| |||||||  |||||||||    
T  16913000 gtcctttatgtttgagatttgtaataaaatggtcttttaagttattttgatcacatataaattctttaagtttg 16913073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 217 - 274
Target Start/End: Original strand, 20209352 - 20209409
Alignment:
Q  217 tctttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
    |||||||||||||||||||||||||||||   |||||||||||||| ||||| |||||    
T  20209352 tctttaagttattttggtcacaaataaatactttaagtttgtaaacattttctattta 20209409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 217 - 274
Target Start/End: Original strand, 20229060 - 20229117
Alignment:
Q  217 tctttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
    |||||||||||||||||||||||||||||   |||||||||||||| ||||| |||||    
T  20229060 tctttaagttattttggtcacaaataaatactttaagtttgtaaacattttctattta 20229117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 110 - 274
Target Start/End: Original strand, 41151391 - 41151554
Alignment:
Q  110 aattacaccagatgttctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaat 209  Q
    |||||||||| | || ||||||||||| | ||||||||| ||  ||| ||| ||||||||||   ||||||||| |||| ||||||||| | || ||||     
T  41151391 aattacaccataggtcctttaagtttgagttttgtaacatattggtccttt-aagttattttga-tcacacataagtcctttaagtttgagtttagtaac 41151488  T
Q  210 aaaatggtc-tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
    | | ||||| |||||||||||||||||||| |||| |   ||| ||||||||| ||||||||||||    
T  41151489 agattggtcctttaagttattttggtcacacataagtcctttatgtttgtaaatgttttcaattta 41151554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 311 - 386
Target Start/End: Complemental strand, 24827508 - 24827432
Alignment:
Q  311 actaaatcaaaaacgtttataaacttaaa-gacttatttgtgactaaaataatttaaaagatgaatctattacaaac 386  Q
    |||||||| |||||||||| ||| ||||| ||||||| |||||||||||||| ||||| ||  ||||||||||||||    
T  24827508 actaaatcgaaaacgtttacaaatttaaaagacttatgtgtgactaaaataacttaaatgacaaatctattacaaac 24827432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 24199044 - 24198973
Alignment:
Q  1 gactaaagtgataacgaaagtgcagagtcaatgatttcttcgtatttaatcatgggtcaaggacctttgtga 72  Q
    |||||||||||||||| ||||||| | ||||||||| ||| |||||||||| ||  |||| |||||||||||    
T  24199044 gactaaagtgataacggaagtgcacattcaatgattactttgtatttaatcctgaatcaaagacctttgtga 24198973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 219 - 274
Target Start/End: Complemental strand, 27128118 - 27128063
Alignment:
Q  219 tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
    |||||||||||||||||||| |||| ||| || ||| |||||||||||||||||||    
T  27128118 tttaagttattttggtcacacataagttttttcagtctgtaaacgttttcaattta 27128063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 311 - 387
Target Start/End: Original strand, 20209446 - 20209523
Alignment:
Q  311 actaaatcaaaaacgtttataaacttaaag-acttatttgtgactaaaataatttaaaagatgaatctattacaaacc 387  Q
    |||| ||| |||| ||||| |||||||||| ||||||||||||| ||||||| ||||| ||| ||||| |||||||||    
T  20209446 actatatcgaaaatgtttacaaacttaaagtacttatttgtgaccaaaataacttaaaggatcaatctgttacaaacc 20209523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 311 - 387
Target Start/End: Original strand, 20229154 - 20229231
Alignment:
Q  311 actaaatcaaaaacgtttataaacttaaag-acttatttgtgactaaaataatttaaaagatgaatctattacaaacc 387  Q
    |||| ||| |||| ||||| |||||||||| ||||||||||||| ||||||| ||||| ||| ||||| |||||||||    
T  20229154 actatatcgaaaatgtttacaaacttaaagtacttatttgtgaccaaaataacttaaaggatcaatctgttacaaacc 20229231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 295 - 387
Target Start/End: Original strand, 36053017 - 36053110
Alignment:
Q  295 tttggttaatagaatcactaaatcaaaaacgtttataaacttaaaga-cttatttgtgactaaaataatttaaaagatgaatctattacaaacc 387  Q
    ||||||||| ||||| |||| ||  ||||| |||| ||||||||||| ||||| |||||||||||||| ||||| ||| ||| | |||||||||    
T  36053017 tttggttaacagaatgactagattgaaaacttttacaaacttaaagaacttatgtgtgactaaaataacttaaaggatcaatattttacaaacc 36053110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 5736952 - 5736903
Alignment:
Q  1 gactaaagtgataacgaaagtgcagagtcaatgatttcttcgtatttaat 50  Q
    |||||||||||||||||||||| ||||| |  |||||||| |||||||||    
T  5736952 gactaaagtgataacgaaagtgtagagttagagatttctttgtatttaat 5736903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 5738036 - 5738101
Alignment:
Q  1 gactaaagtgataacgaaagtgcagagtcaatgatttcttcgtatttaatcatgggtcaaggacct 66  Q
    |||| ||||||||||| |||| |||||||||| | ||||| |||||||||| || |||| ||||||    
T  5738036 gactgaagtgataacggaagtacagagtcaataacttctttgtatttaatcttgagtcatggacct 5738101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 274
Target Start/End: Original strand, 9399908 - 9399964
Alignment:
Q  217 tctttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
    |||||||||||||||||||||| ||||  || ||||| |||||||| |||||||||||    
T  9399908 tctttaagttattttggtcacacataagctt-ttaagattgtaaacattttcaattta 9399964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 9400071 - 9400014
Alignment:
Q  218 ctttaagttattttggtcacaaataaatt-tgttaagtttgtaaacgttttcaattta 274  Q
    ||||||||||||||||||||| |||| |  | |||||||||||||| |||||||||||    
T  9400071 ctttaagttattttggtcacacataagtccttttaagtttgtaaaccttttcaattta 9400014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 274
Target Start/End: Complemental strand, 14895069 - 14895020
Alignment:
Q  225 ttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
    ||||||||| |||| |||||| | |||| |||||||||||||||||||||    
T  14895069 ttattttggccacacataaatcttttaaatttgtaaacgttttcaattta 14895020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 271
Target Start/End: Complemental strand, 36053091 - 36053038
Alignment:
Q  218 ctttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaat 271  Q
    |||||||||||||| |||||| |||| ||  ||||||||||||| |||||||||    
T  36053091 ctttaagttattttagtcacacataagttctttaagtttgtaaaagttttcaat 36053038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 14550122 - 14550150
Alignment:
Q  249 ttaagtttgtaaacgttttcaatttattc 277  Q
    |||||||||||||||||||||||||||||    
T  14550122 ttaagtttgtaaacgttttcaatttattc 14550150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 299 - 386
Target Start/End: Original strand, 15564016 - 15564103
Alignment:
Q  299 gttaatagaatcactaaatcaaaaacgtttataaacttaaag-acttatttgtgactaaaataatttaaaagatgaatctattacaaac 386  Q
    ||||| ||||| ||||||| ||||||||| | ||| |||||| |||||| ||| || ||||||| ||| ||||| ||||||||||||||    
T  15564016 gttaacagaataactaaattaaaaacgtt-acaaatttaaaggacttatgtgtaacaaaaataacttagaagatcaatctattacaaac 15564103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 20057109 - 20057061
Alignment:
Q  104 aggctgaattacaccagatgttctttaagtttgcggtttgtaacagata 152  Q
    ||||| |||||||||| |||| |||||||||||  ||||||||||||||    
T  20057109 aggcttaattacaccacatgtcctttaagtttgacgtttgtaacagata 20057061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 24909743 - 24909683
Alignment:
Q  184 ggtccgttaagtttgcgatttgtaataaaatggtc-tttaagttattttggtcacaaataa 243  Q
    ||||| ||||||||| ||||||||| ||| ||||| |||||||||||||| ||||| ||||    
T  24909743 ggtcctttaagtttgagatttgtaacaaattggtcctttaagttattttgatcacacataa 24909683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 45215444 - 45215500
Alignment:
Q  104 aggctgaattacaccagatgttctttaagtttgcggtttgtaacagatatgtcattt 160  Q
    ||||| |||||||||| |||| |||||||||||  |||||||| ||||| |||||||    
T  45215444 aggcttaattacaccacatgtcctttaagtttgacgtttgtaatagataggtcattt 45215500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 219 - 368
Target Start/End: Original strand, 24684142 - 24684292
Alignment:
Q  219 tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattctttttaccacatcatcttttggttaatagaatcactaaatc 318  Q
    |||||||||||||||| ||| |||||| | ||||||||||||||||||||||||||||  |||| ||||||||||||||   ||||||||  ||||||||    
T  24684142 tttaagttattttggttacacataaatcttttaagtttgtaaacgttttcaatttatttcttttgccacatcatcttttttgtaatagaaagactaaatc 24684241  T
Q  319 aaaaacgtttataaacttaaa-gacttatttgtgactaaaataatttaaaa 368  Q
     |||||||||||||||||||| ||||||| ||||||| |||||| ||||||    
T  24684242 gaaaacgtttataaacttaaaggacttatgtgtgactgaaataacttaaaa 24684292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 126 - 387
Target Start/End: Original strand, 40395101 - 40395362
Alignment:
Q  126 ctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggt-ctttaag 224  Q
    ||||||||||| | ||||| ||||||  ||| ||| | ||||||||| |||||| ||| |||| ||||||||| | ||||||| | | | || |||||||    
T  40395101 ctttaagtttgagatttgttacagattggtccttt-aggttattttt-gtcacatataagtcctttaagtttgaggtttgtaacatattagttctttaag 40395198  T
Q  225 ttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattctttttaccacatcatcttttggttaatagaatcactaaatcaaaaac 324  Q
    |||||||||||||| |||||| | |||||||||||| ||||||||||||  || || ||||||||||||||||   ||||||||  |||||||| |||||    
T  40395199 ttattttggtcacacataaatcttttaagtttgtaagcgttttcaattttgtccttctaccacatcatcttttttgtaatagaaggactaaatcgaaaac 40395298  T
Q  325 gtttataaacttaaa-gacttatttgtgactaaaataatttaaaagatgaatctattacaaacc 387  Q
    ||||| ||| ||||| ||||||| ||||||  |||||| ||||| ||  ||||| |||||||||    
T  40395299 gtttacaaatttaaaggacttatgtgtgacagaaataacttaaaggactaatctgttacaaacc 40395362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 128 - 385
Target Start/End: Original strand, 12498623 - 12498881
Alignment:
Q  128 ttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtcttt-aagtt 226  Q
    |||| |||| ||||||||| ||||  ||| ||||||||||||||| |||||||||| |||  ||||||||  | |||| |||| | || ||||| |||||    
T  12498623 ttaaatttgaggtttgtaatagattggtccttttaagttattttt-gtcacacataagtcttttaagtttaaggtttgcaatatattgatcttttaagtt 12498721  T
Q  227 attttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattctttttaccacatcatcttttggttaatagaatcactaaatcaaaaacgt 326  Q
    |||||||||||| ||||||   |||||||||||||   |||||||||| || || | ||||||||||||||   ||||||||  |||||||| |||||||    
T  12498722 attttggtcacacataaatcctttaagtttgtaaaaaatttcaatttagtccttctgccacatcatcttttttgtaatagaaggactaaatcgaaaacgt 12498821  T
Q  327 ttataaactt-aaagacttatttgtgactaaaataatttaaaagatgaatctattacaaa 385  Q
    ||| ||| || |||||||||| ||||||  |||||||||||| ||| | ||| |||||||    
T  12498822 ttacaaatttaaaagacttatgtgtgaccgaaataatttaaaggattagtctgttacaaa 12498881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 126 - 387
Target Start/End: Original strand, 41083056 - 41083317
Alignment:
Q  126 ctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtc-tttaag 224  Q
    ||||||||||| ||||||||||| ||   |||||| ||||||||||| |||||| ||| |||| |||||||||   ||||||| | | ||||| ||||||    
T  41083056 ctttaagtttgaggtttgtaacatattgatcattt-aagttattttt-gtcacatataagtcctttaagtttgaagtttgtaacatattggtcctttaag 41083153  T
Q  225 ttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattctttttaccacatcatcttttggttaatagaatcactaaatcaaaaac 324  Q
    |||||||| ||||| |||| |   ||||||||||||||||||  |||||| || |||| ||||||||||||||   ||||| ||  |||||||| |||||    
T  41083154 ttattttgatcacacataagtcctttaagtttgtaaacgtttcaaatttagtccttttgccacatcatcttttttgtaatataaggactaaatcgaaaac 41083253  T
Q  325 gtttataaacttaaa-gacttatttgtgactaaaataatttaaaagatgaatctattacaaacc 387  Q
    ||||| ||||||||| ||||||| ||||||  |||||| ||||||||  ||||| |||| ||||    
T  41083254 gtttacaaacttaaaggacttatgtgtgaccgaaataacttaaaagaccaatctgttacgaacc 41083317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 218 - 387
Target Start/End: Complemental strand, 11884859 - 11884690
Alignment:
Q  218 ctttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattctttttaccacatcatcttttggttaatagaatcactaaat 317  Q
    |||||| ||| ||||||||||||||| ||  ||||||||||||| |||| | ||||| || || ||||| |||||| ||||||||||||||  |||||||    
T  11884859 ctttaaattaatttggtcacaaataagttctttaagtttgtaaatgttt-cgatttagtccttctaccatatcatcgtttggttaatagaaggactaaat 11884761  T
Q  318 caaaaacgtttataaacttaaag-acttatttgtgactaaaataatttaaaagatgaatctattacaaacc 387  Q
    | |||| ||||| |||||||||| ||||| ||||||||||||||| || || ||  ||||| |||||||||    
T  11884760 cgaaaatgtttacaaacttaaagaacttagttgtgactaaaataaattgaaggaccaatctgttacaaacc 11884690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 126 - 295
Target Start/End: Complemental strand, 45038511 - 45038343
Alignment:
Q  126 ctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtc-tttaag 224  Q
    ||||||||||| ||||||||| ||||  ||||||| ||||||||||| |||||| ||| |||| ||||||||| | ||||||| | | ||||| ||||||    
T  45038511 ctttaagtttgaggtttgtaatagattggtcattt-aagttattttt-gtcacaaataagtcctttaagtttgaggtttgtaacagattggtcctttaag 45038414  T
Q  225 ttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattctttttaccacatcatctt 295  Q
    |||||||||||||| |||| |   |||||||||||||||||||| ||||| || || | ||||||||||||    
T  45038413 ttattttggtcacacataagtcctttaagtttgtaaacgttttcgatttagtcattctgccacatcatctt 45038343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 159 - 385
Target Start/End: Complemental strand, 53863622 - 53863393
Alignment:
Q  159 tttaagttatttttcgtcacacataggtccgtt-aagtttgcgatttgtaataaaatggtc-tttaagttattttggtcacaaataaatttgttaagttt 256  Q
    |||||||||||||  |||||||||| |||| || ||||||| |  |||||| ||| ||||| ||||||||||||||||||   |||| |   ||||||||    
T  53863622 tttaagttatttta-gtcacacataagtccttttaagtttgagggttgtaacaaattggtcctttaagttattttggtcatgcataagtcctttaagttt 53863524  T
Q  257 gtaaacgttttcaatttattctttttaccacatcatc-ttttggttaatagaatcactaaatcaaaaacgtttataaacttaaag-acttatttgtgact 354  Q
    ||||| |||||||||||| || || | ||||||| || |||||||||| | ||  |||||||  ||| | |||| |||||||||| |||||| |||||||    
T  53863523 gtaaaagttttcaatttagtccttctgccacatcgtcgttttggttaacataaagactaaattgaaatcttttacaaacttaaaggacttatgtgtgact 53863424  T
Q  355 aaaataatttaaaagatgaatctattacaaa 385  Q
    ||||||| ||||| ||  ||||| |||||||    
T  53863423 aaaataacttaaaggaccaatctgttacaaa 53863393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 303
Target Start/End: Complemental strand, 7246359 - 7246182
Alignment:
Q  126 ctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggt-ctttaag 224  Q
    ||||||||||| ||||||||||| ||  ||| ||||||||||||||  |||| ||||| |||| ||||||||| |||||| |||| | |||| |||||      
T  7246359 ctttaagtttgaggtttgtaacatattggtc-ttttaagttattttg-gtcatacataagtcctttaagtttgagatttggaatagattggttctttagt 7246262  T
Q  225 ttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattctttttaccacatcatc-ttttggttaa 303  Q
    |||||||  ||||| |||| |   ||||||||||||| |||||||||||| || || ||| |||||||| ||||||||||    
T  7246261 ttatttttatcacacataagtactttaagtttgtaaaagttttcaatttagtccttatacgacatcatcattttggttaa 7246182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 274
Target Start/End: Original strand, 11884617 - 11884765
Alignment:
Q  126 ctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtcttt-aag 224  Q
    |||||| |||| ||||||||||| ||   || ||||||||||||||| |||||||||| |||| ||||||||| | ||||||| | | ||||| || ||     
T  11884617 ctttaaatttgaggtttgtaacaaattaatccttttaagttattttt-gtcacacataagtcctttaagtttgaggtttgtaacagattggtccttcaat 11884715  T
Q  225 ttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
    ||||||| ||||||| ||| ||  |||||||||||||| ||||| |||||    
T  11884716 ttattttagtcacaactaagttctttaagtttgtaaacattttcgattta 11884765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 219 - 274
Target Start/End: Original strand, 12592273 - 12592328
Alignment:
Q  219 tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
    |||||||||||||||||||| |||||| |  |||||||||||||||||||||||||    
T  12592273 tttaagttattttggtcacacataaatcttgtaagtttgtaaacgttttcaattta 12592328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 214 - 280
Target Start/End: Original strand, 9999378 - 9999444
Alignment:
Q  214 tggtctttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattcttt 280  Q
    |||| |||||||||| ||||||||| |||||||  ||||||||||||||||||| |||||| |||||    
T  9999378 tggtttttaagttatattggtcacacataaattctttaagtttgtaaacgttttgaatttaatcttt 9999444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 277
Target Start/End: Original strand, 40146955 - 40147103
Alignment:
Q  127 tttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtctttaagtt 226  Q
    |||||||||| ||||||| | |||| |||||||| ||||||||||  |||||||||| |||| | ||||||| | ||||||||| | || || ||| |||    
T  40146955 tttaagtttgaggtttgtgatagatttgtcattt-aagttattttg-gtcacacataagtccttgaagtttgaggtttgtaatagattgatccttaggtt 40147052  T
Q  227 attttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattc 277  Q
    |||||||||||| || | |   ||||| ||||||| ||||||| |||||||    
T  40147053 attttggtcacacatgagtcctttaaggttgtaaatgttttcagtttattc 40147103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 126 - 274
Target Start/End: Complemental strand, 41083389 - 41083242
Alignment:
Q  126 ctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtcttt-aag 224  Q
    ||||||||||| ||||||||||||||  ||| ||| ||||||||||  |||||| ||| |||  ||||||||| | || |||| | | |||||||| |||    
T  41083389 ctttaagtttgaggtttgtaacagattggtccttt-aagttattttg-gtcacatatatgtcatttaagtttgaggttcgtaacagattggtcttttaag 41083292  T
Q  225 ttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
    |||||| ||||||| |||| |   |||||||||||||||||||| |||||    
T  41083291 ttatttcggtcacacataagtcctttaagtttgtaaacgttttcgattta 41083242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 171
Target Start/End: Original strand, 17231967 - 17232034
Alignment:
Q  103 aaggctgaattacaccagatgttctttaagtttgcggtttgtaacagatatgtcattttaagttatttt 171  Q
    |||||| ||||||| |||  |||||||||||||| ||||||||||||||| ||| ||||||||||||||    
T  17231967 aaggctaaattacatcagcagttctttaagtttgaggtttgtaacagataagtc-ttttaagttatttt 17232034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 219 - 274
Target Start/End: Original strand, 17232022 - 17232077
Alignment:
Q  219 tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
    |||||||||||||| ||||| |||| | | ||||||||||||||||||||||||||    
T  17232022 tttaagttattttgatcacacataagtcttttaagtttgtaaacgttttcaattta 17232077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 26172955 - 26173022
Alignment:
Q  1 gactaaagtgataacgaaagtgcagagtcaatgatttcttcgtatttaatcatgggtcaaggaccttt 68  Q
    |||||||||||||||| |||||||||||||  || || || |||||||||| || |||||||||||||    
T  26172955 gactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcttgagtcaaggaccttt 26173022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 219 - 274
Target Start/End: Complemental strand, 45787277 - 45787222
Alignment:
Q  219 tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
    |||||||||||||| ||||| |||| ||| ||||||||| ||||||||||||||||    
T  45787277 tttaagttattttgatcacacataagttttttaagtttgcaaacgttttcaattta 45787222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 293
Target Start/End: Complemental strand, 24369358 - 24369233
Alignment:
Q  169 ttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtc-tttaagttattttggtcacaaataaatttgttaagtttgtaaacgtttt 267  Q
    |||| ||||||| ||  ||| ||||||||| | ||||||||| | | ||| ||||||||||||| ||||||  ||| |   ||||||||||||| |||||    
T  24369358 ttttggtcacacctaattcctttaagtttgaggtttgtaatagatttgtcctttaagttattttagtcacacctaagtcctttaagtttgtaaatgtttt 24369259  T
Q  268 caatttattctttttaccacatcatc 293  Q
    | ||||| ||||||| ||||||||||    
T  24369258 cgatttagtctttttgccacatcatc 24369233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 311 - 387
Target Start/End: Original strand, 24369250 - 24369327
Alignment:
Q  311 actaaatcaaaaacgtttataaacttaaag-acttatttgtgactaaaataatttaaaagatgaatctattacaaacc 387  Q
    |||||||| ||||| |||| |||||||||| |||||  |||||||||||||| ||||| ||  |||||||||||||||    
T  24369250 actaaatcgaaaacatttacaaacttaaaggacttaggtgtgactaaaataacttaaaggacaaatctattacaaacc 24369327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 266
Target Start/End: Complemental strand, 44057367 - 44057260
Alignment:
Q  158 ttttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtc-tttaagttattttggtcacaaataaatttgttaagttt 256  Q
    ||||||||||||||  || ||||||| |||  ||||||||| ||||||||||||| ||||| ||||||||||||| |||| | |||| | | ||||| ||    
T  44057367 ttttaagttattttg-gttacacataagtcatttaagtttgagatttgtaataaattggtcatttaagttattttagtcatacataagtct-ttaagctt 44057270  T
Q  257 gtaaacgttt 266  Q
    ||||||||||    
T  44057269 gtaaacgttt 44057260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 126 - 293
Target Start/End: Original strand, 2469901 - 2470065
Alignment:
Q  126 ctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggt-ctttaag 224  Q
    ||||||||||| ||||||||| |||| ||    ||||||||| |||| ||||||| || |||| ||||||||| | ||||||||| | |||| ||||||     
T  2469901 ctttaagtttgaggtttgtaatagat-tggttctttaagtta-ttttggtcacacctaagtcctttaagtttgagctttgtaatatattggtcctttaaa 2469998  T
Q  225 ttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattctttttaccacatcatc 293  Q
    ||| |||||||||| |||| | | |||||||||||||| ||||| ||||| || |||| | ||||||||    
T  2469999 tta-tttggtcacatataagtct-ttaagtttgtaaaccttttcgatttagtcatttttcaacatcatc 2470065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 311 - 386
Target Start/End: Original strand, 12592376 - 12592452
Alignment:
Q  311 actaaatcaaaaacgtttataaacttaaa-gacttatttgtgactaaaataatttaaaagatgaatctattacaaac 386  Q
    |||||||| ||||| |||| ||||||||| ||||||| | |||| || |||| ||||||||| ||||||||||||||    
T  12592376 actaaatcgaaaacttttacaaacttaaaagacttatgtatgaccaatataacttaaaagatcaatctattacaaac 12592452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 190 - 257
Target Start/End: Complemental strand, 50290471 - 50290403
Alignment:
Q  190 ttaagtttgcgatttgtaataaaatggtc-tttaagttattttggtcacaaataaatttgttaagtttg 257  Q
    ||||||||| | ||||||||||| || || |||||||||||||||||||| |||| ||| |||||||||    
T  50290471 ttaagtttgaggtttgtaataaattgatcatttaagttattttggtcacacataagttttttaagtttg 50290403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 274
Target Start/End: Complemental strand, 26782536 - 26782481
Alignment:
Q  219 tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
    ||||||||||||| |||||| |||| | | ||||||||||||| ||||||||||||    
T  26782536 tttaagttatttttgtcacatataagtcttttaagtttgtaaaagttttcaattta 26782481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 274
Target Start/End: Original strand, 51950564 - 51950619
Alignment:
Q  219 tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
    |||||||||||||||||||| |||| |   ||||||||||||| ||||||||||||    
T  51950564 tttaagttattttggtcacacataagtcctttaagtttgtaaatgttttcaattta 51950619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 311 - 370
Target Start/End: Original strand, 55617538 - 55617597
Alignment:
Q  311 actaaatcaaaaacgtttataaacttaaagacttatttgtgactaaaataatttaaaaga 370  Q
    |||||||  ||||| |||| ||||||||| |||||| |||||||||||||| ||||||||    
T  55617538 actaaattgaaaacatttacaaacttaaacacttatgtgtgactaaaataacttaaaaga 55617597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 311 - 370
Target Start/End: Original strand, 55624842 - 55624901
Alignment:
Q  311 actaaatcaaaaacgtttataaacttaaagacttatttgtgactaaaataatttaaaaga 370  Q
    |||||||  ||||| |||| ||||||||| |||||| |||||||||||||| ||||||||    
T  55624842 actaaattgaaaacatttacaaacttaaacacttatgtgtgactaaaataacttaaaaga 55624901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 311 - 385
Target Start/End: Complemental strand, 2470048 - 2469975
Alignment:
Q  311 actaaatcaaaaacgtttataaacttaaagacttatttgtgactaaaataatttaaaagatgaatctattacaaa 385  Q
    |||||||| |||| ||||| |||||||||||||||| ||||||  |||||||||||| ||  ||| |||||||||    
T  2470048 actaaatcgaaaaggtttacaaacttaaagacttatatgtgac-caaataatttaaaggaccaatatattacaaa 2469975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 110 - 243
Target Start/End: Complemental strand, 2470259 - 2470127
Alignment:
Q  110 aattacaccagatgttctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaat 209  Q
    |||||||||||  || |||| |||||  ||||||||| ||||  ||| ||| ||||||||||  |||||| ||| |||| |||| |||| | ||||||||    
T  2470259 aattacaccaggggtcctttcagtttaaggtttgtaatagattggtccttt-aagttattttg-gtcacatataagtcctttaaatttgaggtttgtaat 2470162  T
Q  210 aaaatggtc-tttaagttattttggtcacaaataa 243  Q
    | | ||||| |||||||||||||||||||| ||||    
T  2470161 atattggtcctttaagttattttggtcacacataa 2470127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 105 - 234
Target Start/End: Complemental strand, 21322126 - 21321998
Alignment:
Q  105 ggctgaattacaccagatgttctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgattt 204  Q
    |||| ||||||||||   || ||||||||||| ||||||||||| || | || |||||||||| |||| |||||| ||| |||| ||||||||| | |||    
T  21322126 ggctaaattacaccatgagtcctttaagtttgaggtttgtaacacatttttc-ttttaagtta-ttttggtcacatataagtcctttaagtttgaggttt 21322029  T
Q  205 gtaataaaatggt-ctttaagttattttggt 234  Q
    |||| | | |||| |||||| ||||||||||    
T  21322028 gtaaaagattggtcctttaacttattttggt 21321998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 175 - 280
Target Start/End: Original strand, 53863366 - 53863472
Alignment:
Q  175 tcacacataggtccgttaagtttgcgatttgtaataaaatggtc-tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattt 273  Q
    ||||||||| |||  ||||||| | ||||||||| | | ||||| ||||||||||||| |||||| |||| |   ||||||||||||| | |||||||||    
T  53863366 tcacacataagtcatttaagttcgagatttgtaacagattggtcctttaagttattttagtcacacataagtcctttaagtttgtaaaagatttcaattt 53863465  T
Q  274 attcttt 280  Q
    | |||||    
T  53863466 agtcttt 53863472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 272
Target Start/End: Original strand, 2787979 - 2788032
Alignment:
Q  219 tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatt 272  Q
    |||||||||||||||||||| |||| |   ||||||||||||| ||||||||||    
T  2787979 tttaagttattttggtcacacataagtcatttaagtttgtaaatgttttcaatt 2788032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 236
Target Start/End: Complemental strand, 2788231 - 2788120
Alignment:
Q  124 ttctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggt-cttta 222  Q
    ||||||||||||| ||||||||||| || ||  ||||||||||| |||| ||||||||||  ||| ||||||||  | ||||||| ||| || | |||||    
T  2788231 ttctttaagtttgaggtttgtaacaaat-tgatattttaagtta-ttttggtcacacataaatcctttaagtttaaggtttgtaaaaaattgatccttta 2788134  T
Q  223 agttattttggtca 236  Q
    ||| ||||||||||    
T  2788133 agtcattttggtca 2788120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 7246026 - 7246110
Alignment:
Q  159 tttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtc-tttaagttattttggtcacaaataa 243  Q
    |||||||||||||  |||| ||||| |||| |||||||||  |||||||| ||| ||||| |||||||||||||||| ||| ||||    
T  7246026 tttaagttattttg-gtcagacataagtcctttaagtttgatatttgtaacaaattggtcgtttaagttattttggttacacataa 7246110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 387
Target Start/End: Original strand, 12498886 - 12498943
Alignment:
Q  331 aaacttaaag-acttatttgtgactaaaataatttaaaagatgaatctattacaaacc 387  Q
    |||||||||| |||||| ||||| |||||||| ||||| ||| |||||||||||||||    
T  12498886 aaacttaaaggacttatgtgtgattaaaataacttaaatgatcaatctattacaaacc 12498943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 387
Target Start/End: Original strand, 26782479 - 26782556
Alignment:
Q  311 actaaatcaaaaacgtttataaacttaaa-gacttatttgtgactaaaataatttaaaagatgaatctattacaaacc 387  Q
    |||||||  ||||| |||| ||||||||| ||||||| |||||| ||||||| |||||| || ||| |||||||||||    
T  26782479 actaaattgaaaacttttacaaacttaaaagacttatatgtgacaaaaataacttaaaaaatcaatatattacaaacc 26782556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 387
Target Start/End: Original strand, 45038442 - 45038499
Alignment:
Q  331 aaacttaaag-acttatttgtgactaaaataatttaaaagatgaatctattacaaacc 387  Q
    |||||||||| ||||||||||||| ||||||| ||||| ||  |||||||||||||||    
T  45038442 aaacttaaaggacttatttgtgacaaaaataacttaaatgaccaatctattacaaacc 45038499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 387
Target Start/End: Complemental strand, 45787174 - 45787097
Alignment:
Q  311 actaaatcaaaaacgtttataaacttaaa-gacttatttgtgactaaaataatttaaaagatgaatctattacaaacc 387  Q
    |||||||| |||| ||||||||||||||| | ||||| ||| || ||||||| ||||| ||| ||||| |||||||||    
T  45787174 actaaatcgaaaatgtttataaacttaaatgtcttatgtgtaaccaaaataagttaaatgatcaatctgttacaaacc 45787097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 320 - 387
Target Start/End: Complemental strand, 41519283 - 41519215
Alignment:
Q  320 aaaacgtttataaacttaaag-acttatttgtgactaaaataatttaaaagatgaatctattacaaacc 387  Q
    |||||||||| |||||||||| |||||||| |||||||||||| ||| | ||  ||||||||| |||||    
T  41519283 aaaacgtttacaaacttaaaggacttatttttgactaaaataacttagatgacaaatctattagaaacc 41519215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 221 - 273
Target Start/End: Original strand, 41519237 - 41519289
Alignment:
Q  221 taagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattt 273  Q
    ||||||||||| |||| |||||| |   |||||||||||||||||||||||||    
T  41519237 taagttattttagtcaaaaataagtcctttaagtttgtaaacgttttcaattt 41519289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 321 - 385
Target Start/End: Original strand, 44057260 - 44057324
Alignment:
Q  321 aaacgtttataaacttaaagacttatttgtgactaaaataatttaaaagatgaatctattacaaa 385  Q
    ||||||||| || ||||||||||||| | |||||||||||| ||||| ||  ||| |||||||||    
T  44057260 aaacgtttacaagcttaaagacttatgtatgactaaaataacttaaatgaccaatttattacaaa 44057324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 47874674 - 47874602
Alignment:
Q  1 gactaaagtgataacgaaagtgcagagtcaatgatttcttcgtatttaatcatgggtcaaggacctttgtgat 73  Q
    |||||||||||||||| ||||||||| |||  || || || |||||||||| || |||| |||||| ||||||    
T  47874674 gactaaagtgataacggaagtgcagaatcagggacttatttgtatttaatcttgagtcagggacctatgtgat 47874602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 9e-35; HSPs: 46)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 123 - 387
Target Start/End: Complemental strand, 25456612 - 25456349
Alignment:
Q  123 gttctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtc-ttt 221  Q
    |||||||||||||| ||||||||||||||  |||  |||||||||||||  ||||||||||  | | ||||||||| | ||||||||| | ||||| |||    
T  25456612 gttctttaagtttgaggtttgtaacagattggtc--tttaagttatttta-gtcacacataaatactttaagtttgaggtttgtaatagattggtccttt 25456516  T
Q  222 aagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattctttttaccacatcatcttttggttaatagaatcactaaatcaaa 321  Q
    ||||||||||||||||||| || | | |||||||| |||| |||||  ||||| || || |||||| ||||  |||| |||||||||  |||||||| ||    
T  25456515 aagttattttggtcacaaagaattcttttaagtttttaaaagtttttgatttaatccttctaccacgtcattgtttgcttaatagaaggactaaatcgaa 25456416  T
Q  322 aacgtttataaactt-aaagacttatttgtgactaaaataatttaaaagatgaatctattacaaacc 387  Q
    ||| ||||  ||||| ||||||||||||||||| ||||||| ||||| ||  ||||| |||||||||    
T  25456415 aacatttaccaacttaaaagacttatttgtgaccaaaataacttaaaggaccaatctgttacaaacc 25456349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 126 - 386
Target Start/End: Complemental strand, 35461771 - 35461511
Alignment:
Q  126 ctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtc-tttaag 224  Q
    ||||||||||| ||||||||| ||||  ||| ||| ||||||||||  |||||||||| |||  |||| |||| ||||||||| | | || || ||||||    
T  35461771 ctttaagtttgaggtttgtaatagattggtccttt-aagttattttg-gtcacacataagtcatttaattttgagatttgtaacagattgatcatttaag 35461674  T
Q  225 ttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattctttttaccacatcatcttttggttaatagaatcactaaatcaaaaac 324  Q
    ||||||| ||||||||||| | | ||||||||||||||| |||||  ||| || || |||||||||||  ||||||||||| ||  |||||||| |||||    
T  35461673 ttatttttgtcacaaataactcttttaagtttgtaaacgctttcatattagtcattctaccacatcattgtttggttaatataaggactaaatcgaaaac 35461574  T
Q  325 gtttataaacttaaa-gacttatttgtgactaaaataatttaaaagatgaatctattacaaac 386  Q
     |||| ||||||||| |||||||||||||  ||||||||||||| ||  ||||| ||||||||    
T  35461573 ttttacaaacttaaaggacttatttgtgatcaaaataatttaaaggaccaatctgttacaaac 35461511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 218 - 367
Target Start/End: Complemental strand, 37643038 - 37642888
Alignment:
Q  218 ctttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattctttttaccacatcatcttttggttaatagaatcactaaat 317  Q
    |||||| ||||||||||||||||||| |   ||||||||||||||| |||| | ||| || ||||||||||||||||||||||||||||||| |||||||    
T  37643038 ctttaaattattttggtcacaaataagtcctttaagtttgtaaacggtttcgaattagtccttttaccacatcatcttttggttaatagaatgactaaat 37642939  T
Q  318 caaaaacgtttataaacttaaa-gacttatttgtgactaaaataatttaaa 367  Q
    | |||||||||| ||||||||| || ||||||| ||| ||||||| |||||    
T  37642938 cgaaaacgtttacaaacttaaaggatttatttgagaccaaaataacttaaa 37642888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 126 - 367
Target Start/End: Original strand, 28559237 - 28559479
Alignment:
Q  126 ctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtc-tttaag 224  Q
    |||||||||||  |||||||||||||  ||| ||| ||||||||||| || || |||| |||  || |||||| | ||||||| | | ||||| ||||||    
T  28559237 ctttaagtttgacgtttgtaacagattggtccttt-aagttattttt-gttacgcataagtcaattcagtttgaggtttgtaacagattggtcctttaag 28559334  T
Q  225 ttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattctttttaccacatcatc-ttttggttaatagaatcactaaatcaaaaa 323  Q
    |||||||||||||| |||| |   |||||||||||||||||||||||||| || || |  ||||||||| ||||| ||||  |||| |||||||  ||||    
T  28559335 ttattttggtcacacataagtcctttaagtttgtaaacgttttcaatttaatccttatggcacatcatcgttttgcttaacggaatgactaaattgaaaa 28559434  T
Q  324 cgtttataaacttaaa-gacttatttgtgactaaaataatttaaa 367  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||    
T  28559435 cgtttataaacttaaaggacttatgtgtgactaaaataatttaaa 28559479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 169 - 385
Target Start/End: Original strand, 10827150 - 10827366
Alignment:
Q  169 ttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtctttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttc 268  Q
    |||| |||||||||| |||  ||||||||| | ||||||| | | |||||||||||||||||||||||||  ||    | ||||||||||||||| |||     
T  10827150 ttttggtcacacataagtcttttaagtttgagttttgtaacagattggtctttaagttattttggtcacatttagtcct-ttaagtttgtaaacggttta 10827248  T
Q  269 aatttattctttttaccacatcatcttttggttaatagaatcactaaatcaaaaacgtttataaacttaaa-gacttatttgtgactaaaataatttaaa 367  Q
     ||||| || || |||||||||||  |||||||||| |||  |||||||| |||||||||| ||||||||| ||||| |||||||| |||||||||||||    
T  10827249 gatttagtccttctaccacatcattatttggttaatggaaggactaaatcgaaaacgtttacaaacttaaaggacttgtttgtgaccaaaataatttaaa 10827348  T
Q  368 agatgaatctattacaaa 385  Q
     ||| ||||| |||||||    
T  10827349 ggatcaatctgttacaaa 10827366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 126 - 387
Target Start/End: Complemental strand, 16327432 - 16327172
Alignment:
Q  126 ctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtc-tttaag 224  Q
    ||||||||||| ||||||||| ||||   |||||| ||||||||||     ||||||| |||| ||||||||| | ||||||| | | || || ||||||    
T  16327432 ctttaagtttgaggtttgtaatagattaatcattt-aagttattttag---acacataagtcctttaagtttgaggtttgtaacagattgatcctttaag 16327337  T
Q  225 ttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattctttttaccacatcatc-ttttggttaatagaatcactaaatcaaaaa 323  Q
    ||||||||||||||||||| |   |||||||||||||||||||||||||| || || | |||||||||| |||||||||| | ||  |||||||  ||||    
T  16327336 ttattttggtcacaaataagtactttaagtttgtaaacgttttcaatttagtccttctgccacatcatcgttttggttaacataaggactaaattgaaaa 16327237  T
Q  324 cgtttataaacttaaa-gacttatttgtgactaaaataatttaaaagatgaatctattacaaacc 387  Q
    |||||| ||||||||| ||||||| ||| || ||||||| ||||| ||  ||||| |||||||||    
T  16327236 cgtttacaaacttaaaggacttatgtgttaccaaaataacttaaacgaccaatctgttacaaacc 16327172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 126 - 282
Target Start/End: Original strand, 1996144 - 1996299
Alignment:
Q  126 ctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtc-tttaag 224  Q
    ||||||||||| | |||||||||||| ||  |||||||||||||||  |||||| |||  ||| ||||||||| | ||||||||| | | ||| ||||||    
T  1996144 ctttaagtttgagatttgtaacagat-tgatattttaagttattttg-gtcacatataaatcctttaagtttggggtttgtaatagattagtcctttaag 1996241  T
Q  225 ttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattcttttt 282  Q
    |||||||||||||| |||| |    ||||||||||||||||||||||||| |||||||    
T  1996242 ttattttggtcacacataagtcctataagtttgtaaacgttttcaatttagtcttttt 1996299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 249 - 387
Target Start/End: Complemental strand, 20928058 - 20927919
Alignment:
Q  249 ttaagtttgtaaacgttttcaatttattctttttaccacatcatcttttggttaatagaatcactaaatcaaaaacgtttataaactt-aaagacttatt 347  Q
    |||||||||||||| ||||| ||||| || || |||| ||||||| ||  ||||||||||  |||||||| |||| ||||| |||||| ||||||||| |    
T  20928058 ttaagtttgtaaacattttcgatttagtccttctaccgcatcatcgttgagttaatagaaggactaaatcgaaaatgtttacaaacttaaaagacttact 20927959  T
Q  348 tgtgactaaaataatttaaaagatgaatctattacaaacc 387  Q
    |||||| ||||||| ||||| ||  ||| |||||||||||    
T  20927958 tgtgaccaaaataacttaaatgaccaatttattacaaacc 20927919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 110 - 274
Target Start/End: Original strand, 16327084 - 16327247
Alignment:
Q  110 aattacaccagatgttctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaat 209  Q
    |||||||||||| || ||||||||| | ||||||||| |||| ||    ||||||||| |||| ||| |||||| |||| ||||||||| | |||||||     
T  16327084 aattacaccagaggtcctttaagttagaggtttgtaatagat-tgatcgtttaagtta-ttttagtcgcacataagtcctttaagtttgaggtttgtaac 16327181  T
Q  210 aaaatggtc-tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
    | | ||||| |||||||||||||||| ||| |||| |   ||||||||||||||||||||||||||    
T  16327182 agattggtcgtttaagttattttggtaacacataagtcctttaagtttgtaaacgttttcaattta 16327247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 249 - 369
Target Start/End: Original strand, 4943022 - 4943145
Alignment:
Q  249 ttaagtttgtaaacgttttcaatttattctttttaccacatcatc-ttttggttaatagaatcactaaatcaaaaacgtttataaacttaaa--gactta 345  Q
    |||||||||||||| |||| |||||| || ||||  ||||||||| |||||||||||||||| |||||||  |||| ||||| |||||||||   |||||    
T  4943022 ttaagtttgtaaacatttttaatttagtccttttgacacatcatcgttttggttaatagaatgactaaattgaaaatgtttacaaacttaaaagaactta 4943121  T
Q  346 tttgtgactaaaataatttaaaag 369  Q
    | |||||| ||||||| |||||||    
T  4943122 tgtgtgaccaaaataacttaaaag 4943145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 202 - 387
Target Start/End: Complemental strand, 14604327 - 14604139
Alignment:
Q  202 tttgtaataaaatggtc-tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattctttttaccacatcatcttttggt 300  Q
    ||||||||| | ||||| |||||||||||||||||||| |||| || |||||| ||||||||  |||| |||||||| || | ||| |||||| ||||||    
T  14604327 tttgtaatagattggtcctttaagttattttggtcacacataagttcgttaagattgtaaactatttcgatttattccttctgccatatcatcgtttggt 14604228  T
Q  301 taatagaatcactaaatcaaaaacgtttataaacttaaa-gacttatttgtgactaaaataatttaaaa-gatgaatctattacaaacc 387  Q
    ||| ||||  |||||||  | ||  |||| ||| ||||| ||||||| |||||| |||||||  ||||| ||| ||||| |||||||||    
T  14604227 taacagaaggactaaattgataaaatttacaaatttaaaggacttatatgtgaccaaaataacataaaatgatcaatctgttacaaacc 14604139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 159 - 274
Target Start/End: Original strand, 20927879 - 20927994
Alignment:
Q  159 tttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtc-tttaagttattttggtcacaaataaatttgttaagtttg 257  Q
    |||||||||||||  || ||||||| |||| |||| |||| | ||||||||||| ||||| ||||||||||||||||||||| ||| | | |||||||||    
T  20927879 tttaagttatttta-gttacacataagtcctttaaatttgaggtttgtaataaattggtcatttaagttattttggtcacaagtaagtcttttaagtttg 20927977  T
Q  258 taaacgttttcaattta 274  Q
    ||||| ||||| |||||    
T  20927978 taaacattttcgattta 20927994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 159 - 274
Target Start/End: Complemental strand, 12713190 - 12713073
Alignment:
Q  159 tttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtcttt-aagttattttggtcacaaataaatt--tgttaagtt 255  Q
    |||||||||||||| |||||||||| |||| ||||||||| ||||| ||| | | || ||||| ||||||||||||||||  ||||| |  | |||||||    
T  12713190 tttaagttattttt-gtcacacataagtcctttaagtttgagatttctaacatattgatcttttaagttattttggtcacgcataaagtctttttaagtt 12713092  T
Q  256 tgtaaacgttttcaattta 274  Q
    |||||||||||||||||||    
T  12713091 tgtaaacgttttcaattta 12713073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 159 - 274
Target Start/End: Complemental strand, 12774454 - 12774337
Alignment:
Q  159 tttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtcttt-aagttattttggtcacaaataaatt--tgttaagtt 255  Q
    |||||||||||||| |||||||||| |||| ||||||||| ||||| ||| | | || ||||| ||||||||||||||||  ||||| |  | |||||||    
T  12774454 tttaagttattttt-gtcacacataagtcctttaagtttgagatttctaacatattgatcttttaagttattttggtcacgcataaagtccttttaagtt 12774356  T
Q  256 tgtaaacgttttcaattta 274  Q
    |||||||||||||||||||    
T  12774355 tgtaaacgttttcaattta 12774337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 295 - 387
Target Start/End: Original strand, 5746277 - 5746370
Alignment:
Q  295 tttggttaatagaatcactaaatcaaaaacgtttataaacttaaa-gacttatttgtgactaaaataatttaaaagatgaatctattacaaacc 387  Q
    ||||||||| ||||  ||||||| ||||||||||| ||||||||| ||||||| | |||| ||||||||||||||||| ||| | |||||||||    
T  5746277 tttggttaacagaaagactaaattaaaaacgtttacaaacttaaatgacttatgtatgaccaaaataatttaaaagattaatttgttacaaacc 5746370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 175 - 274
Target Start/End: Original strand, 25456324 - 25456424
Alignment:
Q  175 tcacacataggtccgttaagtttgcgatttgtaataaaatggtc-tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattt 273  Q
    ||||||||| |||| ||||||||| | ||||||| | | ||||| ||||||||||||||||||||||||| | | ||||||| ||||| |||||| ||||    
T  25456324 tcacacataagtcctttaagtttgaggtttgtaacagattggtcctttaagttattttggtcacaaataagtcttttaagttggtaaatgttttcgattt 25456423  T
Q  274 a 274  Q
    |    
T  25456424 a 25456424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 110 - 328
Target Start/End: Complemental strand, 17400898 - 17400678
Alignment:
Q  110 aattacaccagatgttctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaat 209  Q
    |||||||||| | || ||||||||||| | ||||||||| ||  |||| ||||||||| ||||  ||||||||| |||| ||||||||| | |||||||     
T  17400898 aattacaccataagtcctttaagtttgagatttgtaacatattggtca-tttaagtta-ttttgatcacacataagtcctttaagtttgagttttgtaac 17400801  T
Q  210 aaaatggt-ctttaagttattttggt--cacaaataaatttgttaagtttgtaaacgttttcaatttattctttttaccacatca-tcttttggttaata 305  Q
    | | |||| || |||||| |||||||  |||| |||| |   |||| ||||||||||||||||||||| || || |||||||||| | ||||||||||      
T  17400800 agattggtcctgtaagttgttttggtcacacacataagtcctttaaatttgtaaacgttttcaatttagtccttctaccacatcattgttttggttaact 17400701  T
Q  306 gaatcactaaatcaaaaacgttt 328  Q
    |||  |||||||  |||||||||    
T  17400700 gaagaactaaattgaaaacgttt 17400678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 366
Target Start/End: Original strand, 33491564 - 33491754
Alignment:
Q  178 cacataggtccgttaagtttgcgatttgtaataaaatggtc-tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttatt 276  Q
    |||||| |||| ||||||||  | |||||||| || | ||| |||||||||||||| ||||| |||| |   |||| ||||||||  ||||||||||| |    
T  33491564 cacataagtcctttaagtttaaggtttgtaatcaattagtcctttaagttattttgatcacagataagtcctttaactttgtaaaaattttcaatttagt 33491663  T
Q  277 ctttttaccacatcatctttt-ggttaatagaatcactaaatcaaaaacgtttataaacttaaagacttatttgtgactaaaataatttaa 366  Q
    | || | || ||||||||||| |||||| ||||  |||||||  ||||||| ||  |||||||||||| || |||||| ||||||| ||||    
T  33491664 ccttctgccgcatcatctttttggttaacagaagaactaaattgaaaacgtctacgaacttaaagactcatgtgtgaccaaaataacttaa 33491754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 255 - 339
Target Start/End: Original strand, 12713014 - 12713099
Alignment:
Q  255 ttgtaaacgttttcaatttattctttttaccacatcatc-ttttggttaatagaatcactaaatcaaaaacgtttataaacttaaa 339  Q
    ||||||| |||||||||||| || || || ||||||||| |||||||||| ||||| |||||||  |||||||||| |||||||||    
T  12713014 ttgtaaaagttttcaatttagtccttctatcacatcatcgttttggttaacagaatgactaaattgaaaacgtttacaaacttaaa 12713099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 255 - 339
Target Start/End: Original strand, 12774278 - 12774363
Alignment:
Q  255 ttgtaaacgttttcaatttattctttttaccacatcatc-ttttggttaatagaatcactaaatcaaaaacgtttataaacttaaa 339  Q
    ||||||| |||||||||||| || || || ||||||||| |||||||||| ||||| |||||||  |||||||||| |||||||||    
T  12774278 ttgtaaaagttttcaatttagtccttctatcacatcatcgttttggttaacagaatgactaaattgaaaacgtttacaaacttaaa 12774363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 311 - 387
Target Start/End: Original strand, 16327285 - 16327362
Alignment:
Q  311 actaaatcaaaaacgtttataaacttaaag-acttatttgtgactaaaataatttaaaagatgaatctattacaaacc 387  Q
    |||||||  |||||||||| |||||||||| ||||||||||||| ||||||| ||||| ||| ||||| |||||||||    
T  16327285 actaaattgaaaacgtttacaaacttaaagtacttatttgtgaccaaaataacttaaaggatcaatctgttacaaacc 16327362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 219 - 274
Target Start/End: Original strand, 7209882 - 7209937
Alignment:
Q  219 tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
    |||||||||||||||||||| |||| |   ||||||||||||||||||||||||||    
T  7209882 tttaagttattttggtcacacataagtcctttaagtttgtaaacgttttcaattta 7209937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 13170002 - 13170053
Alignment:
Q  190 ttaagtttgcgatttgtaataaaatggtctttaagttattttggtcacaaat 241  Q
    ||||||||| | ||||||||||| ||||||||||||||||||||||| ||||    
T  13170002 ttaagtttgaggtttgtaataaattggtctttaagttattttggtcataaat 13170053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 219 - 274
Target Start/End: Original strand, 37642888 - 37642943
Alignment:
Q  219 tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
    ||||||||||||||||| |||||||||   |||||||||||||||||||| |||||    
T  37642888 tttaagttattttggtctcaaataaatcctttaagtttgtaaacgttttcgattta 37642943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 219 - 274
Target Start/End: Complemental strand, 4943143 - 4943087
Alignment:
Q  219 tttaagttattttggtcacaaataaatt-tgttaagtttgtaaacgttttcaattta 274  Q
    |||||||||||||||||||| |||| || | |||||||||||||| |||||||||||    
T  4943143 tttaagttattttggtcacacataagttcttttaagtttgtaaacattttcaattta 4943087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 7933304 - 7933248
Alignment:
Q  104 aggctgaattacaccagatgttctttaagtttgcggtttgtaacagatatgtcattt 160  Q
    ||||| |||||||||| |||| |||||||||||  |||||||||||||| |||||||    
T  7933304 aggcttaattacaccacatgtcctttaagtttgacgtttgtaacagataggtcattt 7933248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 158 - 274
Target Start/End: Original strand, 23661912 - 23662026
Alignment:
Q  158 ttttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtctttaagttattttggtcacaaataaatttgttaagtttg 257  Q
    ||||||||||||||  || ||||||| |||| |||||||||  |||||| | | | || | |||||||||||||||||||| |||| | | |||||||||    
T  23661912 ttttaagttattttg-gttacacataagtcctttaagtttgatatttgtgacagattgat-tttaagttattttggtcacacataagtcttttaagtttg 23662009  T
Q  258 taaacgttttcaattta 274  Q
    |||| ||||| ||||||    
T  23662010 taaaagttttaaattta 23662026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 158 - 274
Target Start/End: Complemental strand, 23796658 - 23796544
Alignment:
Q  158 ttttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtctttaagttattttggtcacaaataaatttgttaagtttg 257  Q
    ||||||||||||||  || ||||||| |||| |||||||||  |||||| | | | || | |||||||||||||||||||| |||| | | |||||||||    
T  23796658 ttttaagttattttg-gttacacataagtcctttaagtttgatatttgtgacagattgat-tttaagttattttggtcacacataagtcttttaagtttg 23796561  T
Q  258 taaacgttttcaattta 274  Q
    |||| ||||| ||||||    
T  23796560 taaaagttttaaattta 23796544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 546049 - 546120
Alignment:
Q  1 gactaaagtgataacgaaagtgcagagtcaatgatttcttcgtatttaatcatgggtcaaggacctttgtga 72  Q
    |||||||||||||||| |||||||||||||| || || |  |||||||||| || |||| |||||| |||||    
T  546049 gactaaagtgataacggaagtgcagagtcaaggacttatctgtatttaatcctgagtcagggacctatgtga 546120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 313 - 387
Target Start/End: Original strand, 25456463 - 25456538
Alignment:
Q  313 taaatcaaaaacgtttataaacttaaa-gacttatttgtgactaaaataatttaaaagatgaatctattacaaacc 387  Q
    |||||||||||| |||| ||||||||| || || |||||||| ||||||| ||||| ||  |||||||||||||||    
T  25456463 taaatcaaaaacttttaaaaacttaaaagaattctttgtgaccaaaataacttaaaggaccaatctattacaaacc 25456538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 28591127 - 28591198
Alignment:
Q  1 gactaaagtgataacgaaagtgcagagtcaatgatttcttcgtatttaatcatgggtcaaggacctttgtga 72  Q
    |||||||||||||| | |||||||||||||  ||||| || |||||||||| || |||| |||||| |||||    
T  28591127 gactaaagtgataaaggaagtgcagagtcagggatttatttgtatttaatcctgagtcagggacctatgtga 28591198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 274
Target Start/End: Original strand, 35187994 - 35188049
Alignment:
Q  219 tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
    |||||||||||||||||||| ||||||   |||||||||||||| |||| ||||||    
T  35187994 tttaagttattttggtcacacataaatcatttaagtttgtaaacatttttaattta 35188049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 105 - 274
Target Start/End: Original strand, 35461417 - 35461585
Alignment:
Q  105 ggctgaattacaccagatgttctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgattt 204  Q
    |||| ||||||||||   || ||||||||||| ||||||||| | ||  |||  ||||||||| |||| |||||||||| ||||  ||||||||   |||    
T  35461417 ggctaaattacaccacgggtcctttaagtttgaggtttgtaatatattggtc-ctttaagtta-ttttggtcacacataagtcctgtaagtttgaagttt 35461514  T
Q  205 gtaataaaatggt-ctttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
    |||| | | |||| |||||| |||||||| |||||||||| |   ||||||||||||| |||||| |||||    
T  35461515 gtaacagattggtcctttaaattattttgatcacaaataagtcctttaagtttgtaaaagttttcgattta 35461585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 127 - 293
Target Start/End: Complemental strand, 35813632 - 35813468
Alignment:
Q  127 tttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtctttaagtt 226  Q
    |||||||||  ||||||||||||||  || |||| ||||||||||  || ||||||| |||| |||||| || | ||||||| | | | || ||||||||    
T  35813632 tttaagtttaaggtttgtaacagattagttattt-aagttattttg-gttacacataagtcctttaagtgtgaggtttgtaacagatttgtttttaagtt 35813535  T
Q  227 attttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattctttttaccacatcatc 293  Q
    |||||| ||| | |||| |   ||||| ||||||| |||||||||||| |  || ||||||||||||    
T  35813534 attttgctcatacataagtcatttaagattgtaaatgttttcaatttagttcttctaccacatcatc 35813468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 387
Target Start/End: Complemental strand, 1996293 - 1996216
Alignment:
Q  311 actaaatcaaaaacgtttataaacttaaag-acttatttgtgactaaaataatttaaaagatgaatctattacaaacc 387  Q
    |||||||  |||||||||| ||||||| || |||||| |||||| ||||||| ||||| ||  |||||||||||||||    
T  1996293 actaaattgaaaacgtttacaaacttataggacttatgtgtgaccaaaataacttaaaggactaatctattacaaacc 1996216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 2464779 - 2464714
Alignment:
Q  1 gactaaagtgataacgaaagtgcagagtcaatgatttcttcgtatttaatcatgggtcaaggacct 66  Q
    |||||||||||||||| ||||||||||| |  || || || ||||||||||||| |||| ||||||    
T  2464779 gactaaagtgataacgtaagtgcagagttagggacttatttgtatttaatcatgagtcatggacct 2464714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 387
Target Start/End: Complemental strand, 7209939 - 7209862
Alignment:
Q  311 actaaatcaaaaacgtttataaacttaaag-acttatttgtgactaaaataatttaaaagatgaatctattacaaacc 387  Q
    |||||||  |||||||||| |||||||||| |||||| |||||| ||||||| ||||| || | || |||||||||||    
T  7209939 actaaattgaaaacgtttacaaacttaaaggacttatgtgtgaccaaaataacttaaatgacgtatttattacaaacc 7209862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 387
Target Start/End: Complemental strand, 16327169 - 16327112
Alignment:
Q  331 aaacttaaag-acttatttgtgactaaaataatttaaaagatgaatctattacaaacc 387  Q
    |||||||||| |||||| || ||||||||||| ||||| ||| |||||||||||||||    
T  16327169 aaacttaaaggacttatgtgcgactaaaataacttaaacgatcaatctattacaaacc 16327112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 274
Target Start/End: Original strand, 17400579 - 17400693
Alignment:
Q  159 tttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtc-tttaagttattttggtcacaaataaatttgttaagtttg 257  Q
    |||||||||||||  |||||||||| |||  |||||||||  |||||||| ||| ||||| |||||||| ||||| || || |||| |   ||||| |||    
T  17400579 tttaagttatttt--gtcacacataagtcttttaagtttgaaatttgtaacaaattggtcctttaagttcttttgatctcacataagtcctttaaggttg 17400676  T
Q  258 taaacgttttcaattta 274  Q
     ||||||||||||||||    
T  17400677 caaacgttttcaattta 17400693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 243
Target Start/End: Complemental strand, 37033002 - 37032918
Alignment:
Q  158 ttttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtctttaagttattttggtcacaaataa 243  Q
    ||||||||||||||  |||||||||| |||| | |||||||  |||| ||| | | |||| |||||||||||| ||||||||||||    
T  37033002 ttttaagttattttg-gtcacacataagtccttcaagtttgatatttataacatattggtttttaagttatttgggtcacaaataa 37032918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 367
Target Start/End: Original strand, 37642980 - 37643037
Alignment:
Q  311 actaaatcaaaaacgtttataaacttaaag-acttatttgtgactaaaataatttaaa 367  Q
    ||||| || ||| |||||| |||||||||| ||||||||||||| |||||||||||||    
T  37642980 actaattcgaaaccgtttacaaacttaaaggacttatttgtgaccaaaataatttaaa 37643037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 387
Target Start/End: Original strand, 38682791 - 38682868
Alignment:
Q  311 actaaatcaaaaacgtttataaacttaaa-gacttatttgtgactaaaataatttaaaagatgaatctattacaaacc 387  Q
    |||||||| |||| ||||| ||||||||| ||||||| ||| || ||||||| || || ||| |||||||||||||||    
T  38682791 actaaatcgaaaatgtttacaaacttaaaagacttatgtgtaaccaaaataactttaaggatcaatctattacaaacc 38682868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 10827349 - 10827293
Alignment:
Q  218 ctttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
    |||||| |||||||||||||||| || |   |||||||||||||||||||| |||||    
T  10827349 ctttaaattattttggtcacaaacaagtcctttaagtttgtaaacgttttcgattta 10827293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 190 - 257
Target Start/End: Complemental strand, 23662212 - 23662144
Alignment:
Q  190 ttaagtttgcgatttgtaataaaatggtc-tttaagttattttggtcacaaataaatttgttaagtttg 257  Q
    ||||||||| | ||||||||||| ||||| |||||||||||||||| ||| |||| ||  |||||||||    
T  23662212 ttaagtttgaggtttgtaataaattggtcctttaagttattttggttacacataagttctttaagtttg 23662144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #45
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 313 - 384
Target Start/End: Complemental strand, 35812054 - 35811982
Alignment:
Q  313 taaatcaaaaacgtttataaacttaaag-acttatttgtgactaaaataatttaaaagatgaatctattacaa 384  Q
    ||||| ||||| ||||| |||||||||| |||||| | |||| ||||||||||||| ||| || |||||||||    
T  35812054 taaataaaaaatgtttacaaacttaaagtacttatatatgaccaaaataatttaaatgatcaacctattacaa 35811982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #46
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 223 - 283
Target Start/End: Original strand, 35813386 - 35813446
Alignment:
Q  223 agttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattcttttta 283  Q
    ||||||||| |||||| |||| |   ||||||||||||||||||||||| || ||||||||    
T  35813386 agttattttagtcacacataagtcctttaagtttgtaaacgttttcaatatagtcttttta 35813446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 8e-32; HSPs: 44)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 190 - 367
Target Start/End: Complemental strand, 36375074 - 36374897
Alignment:
Q  190 ttaagtttgcgatttgtaataaaatggtctttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattctttttaccacat 289  Q
    ||||||||| ||||| ||||| | ||  |||||| ||||||||||||||||||| ||| |||||||||||||||||||| ||||  || || ||||||||    
T  36375074 ttaagtttgagatttataatagattgacctttaaattattttggtcacaaataagttt-ttaagtttgtaaacgttttcgatttggtcgttctaccacat 36374976  T
Q  290 catcttttggttaatagaatcactaaatcaaaaacgtttataaacttaaa-gacttatttgtgactaaaataatttaaa 367  Q
    |||| ||||||||||| ||| |||||||| ||||| |||| ||| ||||| || ||||||||||| ||||| |||||||    
T  36374975 catcgtttggttaataaaatgactaaatcgaaaacttttacaaatttaaaggatttatttgtgaccaaaattatttaaa 36374897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 219 - 387
Target Start/End: Complemental strand, 40209918 - 40209749
Alignment:
Q  219 tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattctttttaccacatcatc-ttttggttaatagaatcactaaat 317  Q
    |||||| ||||||||||||| |||| |   ||||||||| ||| |||||||||||| || || | |||||| ||| |||||||||| ||||| |||||||    
T  40209918 tttaagatattttggtcacacataagtcgtttaagtttgcaaaagttttcaatttagtcattctgccacataatcgttttggttaacagaataactaaat 40209819  T
Q  318 caaaaacgtttataaacttaaagacttatttgtgactaaaataatttaaaagatgaatctattacaaacc 387  Q
      |||||||||| |||||||||||||||| |||||  |||| || ||||||||| ||||||||| |||||    
T  40209818 tgaaaacgtttacaaacttaaagacttatgtgtgaacaaaacaacttaaaagatcaatctattagaaacc 40209749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 126 - 387
Target Start/End: Original strand, 47069530 - 47069792
Alignment:
Q  126 ctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggt-ctttaag 224  Q
    |||||| |||| ||||||||||| ||  ||| ||| ||||||||||   ||||||||| || | ||||||||| | ||||||| ||| |||| |||| ||    
T  47069530 ctttaaatttgaggtttgtaacatattggtccttt-aagttattttga-tcacacataagttctttaagtttgagttttgtaacaaattggttcttttag 47069627  T
Q  225 ttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattctttttaccacatcatc-ttttggttaatagaatcactaaatcaaaaa 323  Q
    |||||||||||||| |||| |   || |||| |||||||||||||||||| |  || |||||||||||| |||||||||| | ||| |||||||  ||||    
T  47069628 ttattttggtcacacataagtcctttgagttcgtaaacgttttcaatttagttcttctaccacatcatcgttttggttaacataatgactaaattgaaaa 47069727  T
Q  324 cgtttataaacttaaa-gacttatttgtgactaaaataatttaaaagatgaatctattacaaacc 387  Q
    |||||| ||||||||| ||||||| |||||| ||| | | ||||| ||  ||||| |||||||||    
T  47069728 cgtttacaaacttaaaggacttatatgtgacgaaattcacttaaatgaccaatctgttacaaacc 47069792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 177 - 387
Target Start/End: Complemental strand, 47573981 - 47573769
Alignment:
Q  177 acacataggtccgttaagtttgcgatttgtaataaaatggtc-tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttat 275  Q
    ||||||| |||  ||||||||| | ||||||||| | || || |||||||||||||||||||| |||| | | ||||||| ||||||||||||||||||     
T  47573981 acacataagtcttttaagtttgaggtttgtaatagattgatcctttaagttattttggtcacatataagtct-ttaagttcgtaaacgttttcaatttaa 47573883  T
Q  276 tctttttaccacatcatc-ttttggttaatagaatcactaaatcaaaaacgtttataaacttaaa-gacttatttgtgactaaaataatttaaaagatga 373  Q
    || || | |||||||||| |||||||||||||||  |||||||  |||   |||| ||||||||| |||||||  | | | ||||||||||||| ||| |    
T  47573882 tccttctgccacatcatcattttggttaatagaaggactaaattgaaattttttacaaacttaaatgacttatgagcggccaaaataatttaaaggatca 47573783  T
Q  374 atctattacaaacc 387  Q
    || | |||||||||    
T  47573782 atatgttacaaacc 47573769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 158 - 293
Target Start/End: Original strand, 43650017 - 43650152
Alignment:
Q  158 ttttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtc-tttaagttattttggtcacaaataaatttgttaagttt 256  Q
    |||||||||||||| |||||||||||  ||| ||||||||| |  |||||| | | ||||| |||||||||||||| ||||| |||||| | ||||||||    
T  43650017 ttttaagttatttt-cgtcacacataaatcctttaagtttgaggattgtaagagattggtcatttaagttattttgatcacacataaatcttttaagttt 43650115  T
Q  257 gtaaacgttttcaatttattctttttaccacatcatc 293  Q
    |||||| ||||| ||||| ||||| | ||||||||||    
T  43650116 gtaaacattttcgatttagtctttctgccacatcatc 43650152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 125 - 306
Target Start/End: Original strand, 252047 - 252227
Alignment:
Q  125 tctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtcttt-aa 223  Q
    |||||||||||| ||||| ||| ||||  ||||||| ||||||||||  ||||||| || |||| ||||||||  | ||||||| | |   |||||| ||    
T  252047 tctttaagtttgaggtttataatagattggtcattt-aagttattttg-gtcacacgtaagtcctttaagtttaaggtttgtaacagatcagtcttttaa 252144  T
Q  224 gttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattctttttaccacatcatcttttggttaatag 306  Q
    |||||||||||||||||||| |   |||||||||||||||||||| ||||  || || |||||||||||  ||||||||||||    
T  252145 gttattttggtcacaaataagtcctttaagtttgtaaacgttttcgatttggtccttctaccacatcattgtttggttaatag 252227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 169 - 282
Target Start/End: Complemental strand, 32186767 - 32186653
Alignment:
Q  169 ttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtcttt-aagttattttggtcacaaataaatttgttaagtttgtaaacgtttt 267  Q
    |||| |||||||||| |||| ||||||||| | ||||||| | | || | ||| ||||||||||||| ||| |||||||  |||||||||||||||||||    
T  32186767 ttttggtcacacataagtcctttaagtttgaggtttgtaacatattgatgttttaagttattttggttacacataaattctttaagtttgtaaacgtttt 32186668  T
Q  268 caatttattcttttt 282  Q
    ||||||| |||||||    
T  32186667 caatttagtcttttt 32186653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 219 - 358
Target Start/End: Complemental strand, 14624290 - 14624149
Alignment:
Q  219 tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattctttttaccacatcatc-ttttggttaatagaatcactaaat 317  Q
    ||||||||||| |||||||| |||| | | |||||||||||||||||||||||||| |  || |  ||||||||| |||||||||||||||  |||||||    
T  14624290 tttaagttattctggtcacacataagtcttttaagtttgtaaacgttttcaatttaattcttctgtcacatcatcgttttggttaatagaaggactaaat 14624191  T
Q  318 caaaaacgtttataaacttaaa-gacttatttgtgactaaaa 358  Q
      ||||  |||| | ||||||| ||||||| |||||| ||||    
T  14624190 tgaaaatatttacagacttaaatgacttatgtgtgaccaaaa 14624149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 190 - 274
Target Start/End: Original strand, 28813901 - 28813986
Alignment:
Q  190 ttaagtttgcgatttgtaataaaatggtc-tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
    ||||||||| ||||||||||||| || || |||||||||||||||||||| |||| |   | ||||||||||||||||||||||||    
T  28813901 ttaagtttgagatttgtaataaattgatcatttaagttattttggtcacacataagtccttcaagtttgtaaacgttttcaattta 28813986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 47891364 - 47891308
Alignment:
Q  218 ctttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
    ||||||||||||||||||||| |||| | | ||||||||||||||||||||||||||    
T  47891364 ctttaagttattttggtcacacataagtcttttaagtttgtaaacgttttcaattta 47891308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 320 - 387
Target Start/End: Original strand, 47573891 - 47573958
Alignment:
Q  320 aaaacgtttataaacttaaagacttatttgtgactaaaataatttaaaagatgaatctattacaaacc 387  Q
    ||||||||||  ||||||||||||||| |||||| ||||||| ||||| ||| |||||||||||||||    
T  47573891 aaaacgtttacgaacttaaagacttatatgtgaccaaaataacttaaaggatcaatctattacaaacc 47573958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 219 - 329
Target Start/End: Original strand, 14964923 - 14965032
Alignment:
Q  219 tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattctttttaccacatcatcttttggttaatagaatcactaaatc 318  Q
    |||||||||||||||||||| |||| |   ||||||||||||| |||||||||||| || || | ||||||||| |||| | ||||||||  ||||||||    
T  14964923 tttaagttattttggtcacacataagtcctttaagtttgtaaaggttttcaatttagtccttctgccacatcattttttag-taatagaaggactaaatc 14965021  T
Q  319 aaaaacgttta 329  Q
     ||||| ||||    
T  14965022 gaaaacattta 14965032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 219 - 339
Target Start/End: Original strand, 26724104 - 26724225
Alignment:
Q  219 tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattctttttaccacatc-atcttttggttaatagaatcactaaat 317  Q
    |||||||||||||||||||| |||| |   |||||||| |||| |||||||||||| || || | |||||||  | |||||||||| | ||  |||||||    
T  26724104 tttaagttattttggtcacatataagtcctttaagtttataaaagttttcaatttagtcattctgccacatcgttgttttggttaacaaaaggactaaat 26724203  T
Q  318 caaaaacgtttataaacttaaa 339  Q
      ||||||||||||||||||||    
T  26724204 tgaaaacgtttataaacttaaa 26724225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 314 - 367
Target Start/End: Original strand, 36374992 - 36375045
Alignment:
Q  314 aaatcaaaaacgtttataaacttaaagacttatttgtgactaaaataatttaaa 367  Q
    ||||| |||||||||| ||||||||| ||||||||||||| |||||||||||||    
T  36374992 aaatcgaaaacgtttacaaacttaaaaacttatttgtgaccaaaataatttaaa 36375045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 266
Target Start/End: Original strand, 25848321 - 25848428
Alignment:
Q  159 tttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtct-ttaagttattttggtcacaaataaatttgttaagtttg 257  Q
    |||||||||||||  |||||||| | |||| ||||||||| | ||||||||| | | |||  ||||||||||||||||||| | |||| | |||||||||    
T  25848321 tttaagttattttg-gtcacacacaagtcctttaagtttgaggtttgtaatagattagtccgttaagttattttggtcacacaaaaatcttttaagtttg 25848419  T
Q  258 taaacgttt 266  Q
    |||||||||    
T  25848420 taaacgttt 25848428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 249 - 361
Target Start/End: Complemental strand, 45131647 - 45131532
Alignment:
Q  249 ttaagtttgtaaacgttttcaatttattctttttaccacatcatc-ttttggttaatagaatcactaaatcaaaaacgtttataaacttaaa--gactta 345  Q
    |||||||||||||| ||||||||||| || || || ||||| ||| |||||||||| ||||| ||||| |  ||||| |||| |||||||||  ||||||    
T  45131647 ttaagtttgtaaacattttcaatttagtccttctaacacattatcgttttggttaacagaatgactaagttgaaaacatttacaaacttaaaaggactta 45131548  T
Q  346 tttgtgactaaaataa 361  Q
    | |||||| |||||||    
T  45131547 tgtgtgacaaaaataa 45131532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 219 - 309
Target Start/End: Complemental strand, 13903047 - 13902956
Alignment:
Q  219 tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattctttttaccacatca-tcttttggttaatagaat 309  Q
    |||||||||||||||| ||| |||| |   |||| ||||||||||||||||||||| |  ||| ||||||||| | ||||||||||||||||    
T  13903047 tttaagttattttggttacatataagtcctttaaatttgtaaacgttttcaatttagtaatttgaccacatcattgttttggttaatagaat 13902956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 249 - 367
Target Start/End: Original strand, 18019946 - 18020065
Alignment:
Q  249 ttaagtttgtaaacgttttcaatttattctttttaccacatcatcttttggttaatagaatcactaaatcaaaaacgtttataaactt-aaagacttatt 347  Q
    ||||||||||||||| |||||||||| || || | |||||||||| ||||||||| | ||  |||||||  |||| ||||  |||||| ||||||||||     
T  18019946 ttaagtttgtaaacgctttcaatttagtccttctgccacatcatcctttggttaacataaggactaaattgaaaaggtttgcaaacttaaaagacttatg 18020045  T
Q  348 tgtgactaaaataatttaaa 367  Q
    ||| || ||||||| |||||    
T  18020046 tgtaaccaaaataacttaaa 18020065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 20464179 - 20464108
Alignment:
Q  1 gactaaagtgataacgaaagtgcagagtcaatgatttcttcgtatttaatcatgggtcaaggacctttgtga 72  Q
    |||||||||||||||  |||||||||||||  || ||||| ||||||||||||| | || ||||||||||||    
T  20464179 gactaaagtgataacagaagtgcagagtcagggacttctttgtatttaatcatgagccagggacctttgtga 20464108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 314 - 387
Target Start/End: Complemental strand, 252194 - 252120
Alignment:
Q  314 aaatcaaaaacgtttataaacttaaag-acttatttgtgactaaaataatttaaaagatgaatctattacaaacc 387  Q
    ||||| |||||||||| |||||||||| ||||||||||||| ||||||| ||||||||   |||| |||||||||    
T  252194 aaatcgaaaacgtttacaaacttaaaggacttatttgtgaccaaaataacttaaaagactgatctgttacaaacc 252120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 48574472 - 48574537
Alignment:
Q  1 gactaaagtgataacgaaagtgcagagtcaatgatttcttcgtatttaatcatgggtcaaggacct 66  Q
    ||||||||||||||||||||||||||||||  || || || |||||||||| || |||| ||||||    
T  48574472 gactaaagtgataacgaaagtgcagagtcagggacttatttgtatttaatcctgagtcagggacct 48574537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 368
Target Start/End: Complemental strand, 54343525 - 54343349
Alignment:
Q  192 aagtttgcgatttgtaataaaatggtc-tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattctttttaccacatc 290  Q
    ||||||| ||||||||||||| ||||| |||  ||||||||| ||||| |||||| | ||||||||||| |  ||||| | ||| || || | |||| ||    
T  54343525 aagtttgagatttgtaataaattggtcatttgtgttattttgatcacacataaatcttttaagtttgtagatattttcga-ttagtccttctgccacttc 54343427  T
Q  291 atcttttggttaatagaatcactaaatcaaaaacgtttataaacttaaagacttatttgtgactaaaataatttaaaa 368  Q
    ||  ||||||||| | ||  ||  |||  |||||||||| |||||||||| ||||| |||||| ||||||| ||||||    
T  54343426 attgtttggttaacataaggaccgaattgaaaacgtttacaaacttaaaggcttatatgtgaccaaaataacttaaaa 54343349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 50332526 - 50332582
Alignment:
Q  218 ctttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
    ||||||||||||||| ||||| |||| |   ||||||||||||||||||||||||||    
T  50332526 ctttaagttattttgatcacatataagtcatttaagtttgtaaacgttttcaattta 50332582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 221 - 367
Target Start/End: Complemental strand, 50332674 - 50332527
Alignment:
Q  221 taagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattctttttaccacatca-tcttttggttaatagaatcactaaatca 319  Q
    ||||||||||| | |||| |||||| | |||| |||||||| |||||||||||| || || |  ||||||| | |||||||||  | || ||||||||      
T  50332674 taagttatttttgccacacataaatct-ttaactttgtaaaagttttcaatttaatcattctgtcacatcattgttttggttagcataagcactaaattg 50332576  T
Q  320 aaaacgtttataaacttaaa-gacttatttgtgactaaaataatttaaa 367  Q
    |||||||||| ||||||||| ||||||| |||||  ||||||| |||||    
T  50332575 aaaacgtttacaaacttaaatgacttatatgtgatcaaaataacttaaa 50332527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 19114643 - 19114572
Alignment:
Q  1 gactaaagtgataacgaaagtgcagagtcaatgatttcttcgtatttaatcatgggtcaaggacctttgtga 72  Q
    |||||||||||||||| ||||||| ||| | ||| ||||| |||||||||| || |||| |||||| |||||    
T  19114643 gactaaagtgataacggaagtgcaaagttagtgacttctttgtatttaatcttgagtcagggacctctgtga 19114572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 30955049 - 30954964
Alignment:
Q  159 tttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtc--tttaagttattttggtcacaaataa 243  Q
    |||||||||||||  |||||||||| |||| ||| ||||| ||||||||| | | |||||  |||||||||||||||||||| ||||    
T  30955049 tttaagttattttg-gtcacacataagtcctttatgtttgagatttgtaagagattggtccttttaagttattttggtcacacataa 30954964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 30970861 - 30970776
Alignment:
Q  159 tttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtc--tttaagttattttggtcacaaataa 243  Q
    |||||||||||||  |||||||||| |||| ||| ||||| ||||||||| | | |||||  |||||||||||||||||||| ||||    
T  30970861 tttaagttattttg-gtcacacataagtcctttatgtttgagatttgtaagagattggtccttttaagttattttggtcacacataa 30970776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 293
Target Start/End: Complemental strand, 36667324 - 36667249
Alignment:
Q  218 ctttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattctttttaccacatcatc 293  Q
    ||||||||||||||||||||| |||| | | ||||||||||||||||  || ||||| || || | ||||||||||    
T  36667324 ctttaagttattttggtcacacataagtcttttaagtttgtaaacgtagtcgatttagtcattctcccacatcatc 36667249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 295 - 387
Target Start/End: Original strand, 40286419 - 40286510
Alignment:
Q  295 tttggttaatagaatcactaaatcaaaaacgtttataaacttaaag-acttatttgtgactaaaataatttaaaagatgaatctattacaaacc 387  Q
    ||||||||||||||  |||||||  |||| ||||| |||||||||| |||||  |||||||||||||| | ||||||  ||||| |||||||||    
T  40286419 tttggttaatagaagaactaaattgaaaatgtttacaaacttaaagaactta--tgtgactaaaataactcaaaagaccaatctgttacaaacc 40286510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 43649990 - 43650044
Alignment:
Q  192 aagtttgcgatttgtaataaaatggtc-tttaagttattttggtcacaaataaat 245  Q
    ||||||| ||||||||||||| ||||| ||||||||||||| |||||| ||||||    
T  43649990 aagtttgagatttgtaataaattggtcttttaagttattttcgtcacacataaat 43650044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 47118064 - 47118114
Alignment:
Q  1 gactaaagtgataacgaaagtgcagagtcaatgatttcttcgtatttaatc 51  Q
    ||||||||||||||||||||||||||||||  || ||||| | ||||||||    
T  47118064 gactaaagtgataacgaaagtgcagagtcagagacttctttgcatttaatc 47118114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 17701932 - 17701997
Alignment:
Q  1 gactaaagtgataacgaaagtgcagagtcaatgatttcttcgtatttaatcatgggtcaaggacct 66  Q
    |||||||||||||||| |||||||||||||  || || || |||||||||| || |||| ||||||    
T  17701932 gactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcttgagtcagggacct 17701997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 274
Target Start/End: Complemental strand, 18020157 - 18020010
Alignment:
Q  126 ctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtc-tttaag 224  Q
    ||||||||||| ||||||||| ||||   | |||| ||||||||||  |||| ||||| |||| ||||||||  | ||| ||| | | ||||| ||||||    
T  18020157 ctttaagtttgaggtttgtaatagattgattattt-aagttattttg-gtcaaacataagtcctttaagtttaaggtttataacagattggtcgtttaag 18020060  T
Q  225 ttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
    |||||||||| ||| |||| | | ||||||||| |||| |||||||||||    
T  18020059 ttattttggttacacataagtcttttaagtttgcaaaccttttcaattta 18020010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 25848291 - 25848340
Alignment:
Q  190 ttaagtttgcgatttgtaataaaatggtc-tttaagttattttggtcaca 238  Q
    ||||||||| ||||||||||||| || || ||||||||||||||||||||    
T  25848291 ttaagtttgagatttgtaataaattgatcctttaagttattttggtcaca 25848340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 274
Target Start/End: Complemental strand, 25848602 - 25848486
Alignment:
Q  158 ttttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtc-tttaagttattttggtcacaaataaatttgttaagttt 256  Q
    ||||||||||||||   ||||||||| |||| |||| |||  | ||||||| | | ||||| |||||||||||||||||||| |||  |   ||||||||    
T  25848602 ttttaagttattttaa-tcacacataagtcctttaaattttaggtttgtaacacattggtcctttaagttattttggtcacacatatgtcctttaagttt 25848504  T
Q  257 gtaaacgttttcaattta 274  Q
    ||||| ||||||||||||    
T  25848503 gtaaatgttttcaattta 25848486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 385
Target Start/End: Complemental strand, 26724167 - 26724086
Alignment:
Q  305 agaatcactaaatcaaaaacgtttataaacttaaa-gacttatttgtgactaaaataatttaaaagatgaatctattacaaa 385  Q
    ||||| |||||||  ||||| |||||||||||||| ||||||| |||||| ||||||| ||||| ||  ||||| |||||||    
T  26724167 agaatgactaaattgaaaacttttataaacttaaaggacttatatgtgaccaaaataacttaaatgactaatcttttacaaa 26724086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 274
Target Start/End: Original strand, 26976412 - 26976465
Alignment:
Q  221 taagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
    |||||||||||||| ||| | |||| | |||||||||||| |||||||||||||    
T  26976412 taagttattttggttacacaaaaatcttttaagtttgtaatcgttttcaattta 26976465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 274
Target Start/End: Complemental strand, 40286550 - 40286437
Alignment:
Q  159 tttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtcttta-agttattttggtcacaaataaatttgttaagtttg 257  Q
    ||||||||||||||  || |||||| |||| ||||||||| | ||||||| | | ||||||||  ||||||||| ||||||  ||| ||  |||||||||    
T  40286550 tttaagttattttta-tcgcacataagtcctttaagtttgaggtttgtaacagattggtcttttgagttattttagtcaca--taagttctttaagtttg 40286454  T
Q  258 taaacgttttcaattta 274  Q
    ||||| |||||||||||    
T  40286453 taaacattttcaattta 40286437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 274
Target Start/End: Original strand, 46337594 - 46337651
Alignment:
Q  217 tctttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
    |||||||||||||||||||||| ||||||   |||||||||||||  ||||| |||||    
T  46337594 tctttaagttattttggtcacagataaatcctttaagtttgtaaaaattttcgattta 46337651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 387
Target Start/End: Complemental strand, 47891180 - 47891123
Alignment:
Q  331 aaacttaaa-gacttatttgtgactaaaataatttaaaagatgaatctattacaaacc 387  Q
    ||||||||| ||||||  |||||| ||||||||||||||||| ||||| |||||||||    
T  47891180 aaacttaaatgacttaggtgtgaccaaaataatttaaaagatcaatctgttacaaacc 47891123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 272
Target Start/End: Original strand, 54343350 - 54343402
Alignment:
Q  219 tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatt 272  Q
    |||||||||||||||||||| ||||   | ||||||||||||||||||||||||    
T  54343350 tttaagttattttggtcacatataagcct-ttaagtttgtaaacgttttcaatt 54343402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 33427860 - 33427832
Alignment:
Q  2 actaaagtgataacgaaagtgcagagtca 30  Q
    |||||||||||||||||||||||||||||    
T  33427860 actaaagtgataacgaaagtgcagagtca 33427832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 159 - 274
Target Start/End: Complemental strand, 36900177 - 36900062
Alignment:
Q  159 tttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtc-tttaagttattttggtcacaaataaatttgttaagtttg 257  Q
    |||||||||||||  || |||||||||||| ||||||||  | ||||||| | | || || |||||||||||||  || || ||||||   |||||||||    
T  36900177 tttaagttattttg-gttacacataggtcctttaagtttaaggtttgtaagagattgatcgtttaagttattttaatctcacataaatcctttaagtttg 36900079  T
Q  258 taaacgttttcaattta 274  Q
    ||||| |||||||||||    
T  36900078 taaacattttcaattta 36900062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 48573095 - 48573023
Alignment:
Q  1 gactaaagtgataacgaaagtgcagagtcaatgatttcttcgtatttaatcatgggtcaaggacctttgtgat 73  Q
    |||||||||||||||| |||||||||||||  |  || || |||||||||| || |||| |||||| ||||||    
T  48573095 gactaaagtgataacggaagtgcagagtcagaggcttatttgtatttaatcctgagtcagggacctatgtgat 48573023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 68; Significance: 5e-30; HSPs: 2)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 128 - 385
Target Start/End: Complemental strand, 21854 - 21596
Alignment:
Q  128 ttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtcttt-aagtt 226  Q
    |||| |||| ||||||||| ||||  ||| ||||||||||||||| |||||||||| |||  ||||||||  | |||| |||| | || ||||| |||||    
T  21854 ttaaatttgaggtttgtaatagattggtccttttaagttattttt-gtcacacataagtcttttaagtttaaggtttgcaatatattgatcttttaagtt 21756  T
Q  227 attttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattctttttaccacatcatcttttggttaatagaatcactaaatcaaaaacgt 326  Q
    |||||||||||| ||||||   |||||||||||||   |||||||||| || || | ||||||||||||||   ||||||||  |||||||| |||||||    
T  21755 attttggtcacacataaatcctttaagtttgtaaaaaatttcaatttagtccttctgccacatcatcttttttgtaatagaaggactaaatcgaaaacgt 21656  T
Q  327 ttataaactt-aaagacttatttgtgactaaaataatttaaaagatgaatctattacaaa 385  Q
    ||| ||| || |||||||||| ||||||  |||||||||||| ||| | ||| |||||||    
T  21655 ttacaaatttaaaagacttatgtgtgaccgaaataatttaaaggattagtctgttacaaa 21596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 387
Target Start/End: Complemental strand, 21591 - 21534
Alignment:
Q  331 aaacttaaag-acttatttgtgactaaaataatttaaaagatgaatctattacaaacc 387  Q
    |||||||||| |||||| ||||| |||||||| ||||| ||| |||||||||||||||    
T  21591 aaacttaaaggacttatgtgtgattaaaataacttaaatgatcaatctattacaaacc 21534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 87 - 303
Target Start/End: Original strand, 42312722 - 42312938
Alignment:
Q  87 ttgttagagtttattcaaggctgaattacaccagatgttctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggt 186  Q
    |||||| ||||||||  ||||| ||||||||| || || ||||||||||| ||||||||| | ||  |||| ||||||||| |||| |||||||||| ||    
T  42312722 ttgttatagtttattttaggctaaattacacctgaggtcctttaagtttgaggtttgtaatatattggtca-tttaagtta-ttttggtcacacataagt 42312819  T
Q  187 ccgttaagtttgcgatttgtaataaaatggtc-tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattctttttacc 285  Q
    || ||||||||| ||||||||||| | ||||| ||||  ||||||| |||||| |||| |   |||| |||||||| |||||||||||| || || |||     
T  42312820 cctttaagtttgagatttgtaatagattggtcatttagtttatttttgtcacacataagtcctttaaatttgtaaaagttttcaatttagtccttatacg 42312919  T
Q  286 acatcatc-ttttggttaa 303  Q
    |||||||| ||||||||||    
T  42312920 acatcatcattttggttaa 42312938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 110 - 367
Target Start/End: Complemental strand, 44294123 - 44293866
Alignment:
Q  110 aattacaccagatgttctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaat 209  Q
    ||||||||||  ||| |||||| |||| ||||||||||| ||  ||| ||| || |||||||  |||||||||| |||  ||| ||||| | |||||||     
T  44294123 aattacaccacgtgtcctttaaatttgaggtttgtaacatattagtcctttaaa-ttattttg-gtcacacataagtcttttacgtttgaggtttgtaac 44294026  T
Q  210 aaaatggtc-tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattctttttaccacatcatcttttggttaatagaa 308  Q
    | | || || ||||||||||||||||||||||||| |   |||||||||||||| ||||| || || || |||||||||||||   |||||||||   ||    
T  44294025 agattgatcctttaagttattttggtcacaaataagtactttaagtttgtaaacattttcgatatagtcattttaccacatcactgtttggttaaagaaa 44293926  T
Q  309 tcactaaatcaaaaacgtttataaacttaaag-acttatttgtgactaaaataatttaaa 367  Q
      |||||||  |||| ||||| |||||||||| | ||||||||||| ||||||| |||||    
T  44293925 ggactaaatagaaaatgtttacaaacttaaagtatttatttgtgaccaaaataacttaaa 44293866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 219 - 385
Target Start/End: Original strand, 43258338 - 43258515
Alignment:
Q  219 tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattctttttaccacatcatc--ttttg---------gttaataga 307  Q
    ||||||||||||| |||||| |||| | | |||||||||||||| ||||| ||||| ||||| | | ||||||||  |||||         ||||| |||    
T  43258338 tttaagttatttttgtcacacataagtgttttaagtttgtaaacattttcgatttagtctttctgcgacatcatcgtttttgtaatattttgttaacaga 43258437  T
Q  308 atcactaaatcaaaaacgtttataaacttaaa-gacttatttgtgactaaaataatttaaaagatgaatctattacaaa 385  Q
    || ||||||| ||||||||||| ||||||||| ||||||| |||||  |||||||||||||| || |||||||||||||    
T  43258438 atgactaaattaaaaacgtttaaaaacttaaaggacttatgtgtgatcaaaataatttaaaa-atcaatctattacaaa 43258515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 184 - 387
Target Start/End: Complemental strand, 6694809 - 6694605
Alignment:
Q  184 ggtccgttaagtttgcgatttgtaataaaatggtc-tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattcttttt 282  Q
    ||||| ||||||||| | ||||||| | | ||||| |||||||||||||||||||| |||| |   |||||||| ||||||||||| |||||| ||| |     
T  6694809 ggtcctttaagtttgaggtttgtaacatattggtcctttaagttattttggtcacacataagtcctttaagtttataaacgttttcgatttatccttctg 6694710  T
Q  283 accacatcatct-tttggttaatagaatcactaaatcaaaaacgtttataaacttaaag-acttatttgtgactaaaataatttaaaagatgaatctatt 380  Q
     ||| ||||| | ||||||||| | ||  |||||||  |||||||||  |||||||||| |||||| ||| || ||||||| ||||| ||| ||||||||    
T  6694709 -ccatatcatatgtttggttaacataaagactaaattgaaaacgtttgcaaacttaaaggacttatgtgtaac-aaaataacttaaaggatcaatctatt 6694612  T
Q  381 acaaacc 387  Q
    |||||||    
T  6694611 acaaacc 6694605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 174 - 274
Target Start/End: Original strand, 3198259 - 3198360
Alignment:
Q  174 gtcacacataggtccgttaagtttgcgatttgtaataaaatggtcttt-aagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatt 272  Q
    |||||||||| || | ||||||||| | ||||||| ||| |||||||| |||||||||||||| || |||| ||  | |||||||||||| |||||||||    
T  3198259 gtcacacataagttctttaagtttgaggtttgtaacaaattggtcttttaagttattttggtcccacataagttcttaaagtttgtaaacattttcaatt 3198358  T
Q  273 ta 274  Q
    ||    
T  3198359 ta 3198360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 330 - 387
Target Start/End: Complemental strand, 6222151 - 6222094
Alignment:
Q  330 taaacttaaagacttatttgtgactaaaataatttaaaagatgaatctattacaaacc 387  Q
    ||||||||||||||||| |||||||||||||| ||||||||  ||| |||||||||||    
T  6222151 taaacttaaagacttatgtgtgactaaaataacttaaaagaccaatatattacaaacc 6222094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 158 - 274
Target Start/End: Original strand, 11975480 - 11975596
Alignment:
Q  158 ttttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtc-tttaagttattttggtcacaaataaatttgttaagttt 256  Q
    ||||||||||||||| | |||||||| |||| ||||||||| | ||||||| | | || || ||||||||||| |||||||| |||| |   ||||||||    
T  11975480 ttttaagttattttt-gacacacataagtcctttaagtttgaggtttgtaacatattgatcctttaagttattgtggtcacacataagtcctttaagttt 11975578  T
Q  257 gtaaacgttttcaattta 274  Q
     |||||||||||||||||    
T  11975579 ttaaacgttttcaattta 11975596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 217 - 274
Target Start/End: Original strand, 44293864 - 44293921
Alignment:
Q  217 tctttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
    |||||||||||||||||||||||||||||   |||||||||||||| ||||| |||||    
T  44293864 tctttaagttattttggtcacaaataaatactttaagtttgtaaacattttctattta 44293921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 273
Target Start/End: Complemental strand, 27576666 - 27576520
Alignment:
Q  126 ctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtc-tttaag 224  Q
    |||||||||||  |||||||||||||  ||| ||| ||||||||||  |||||||||| |||  |||||||||  ||||||||   | ||||| |||| |    
T  27576666 ctttaagtttgacgtttgtaacagattggtccttt-aagttattttg-gtcacacataagtcatttaagtttgatatttgtaactgattggtcctttagg 27576569  T
Q  225 ttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattt 273  Q
    |||||||||||||| |||| |   ||||||||||||| |||||||||||    
T  27576568 ttattttggtcacacataagtcctttaagtttgtaaaagttttcaattt 27576520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 110 - 280
Target Start/End: Original strand, 6694517 - 6694685
Alignment:
Q  110 aattacaccagatgttctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaat 209  Q
    ||||||| |||  |||||||||||||| ||||||||| | ||  ||| ||||||||||||||   || |||||| |||| ||||||||| | ||||||||    
T  6694517 aattacatcaggcgttctttaagtttgaggtttgtaataaattggtc-ttttaagttattttgt-tcccacataagtcctttaagtttgtggtttgtaat 6694614  T
Q  210 aaaatggtc-tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattcttt 280  Q
    | | || || |||||||||||||| | ||| |||| |   ||||||||| |||||||||||||||| |||||    
T  6694615 agattgatcctttaagttattttgtt-acacataagtcctttaagtttgcaaacgttttcaatttagtcttt 6694685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 10899086 - 10899157
Alignment:
Q  1 gactaaagtgataacgaaagtgcagagtcaatgatttcttcgtatttaatcatgggtcaaggacctttgtga 72  Q
    |||||||||||||||| |||||||||||||  || || || |||||||||| ||||||||||| || |||||    
T  10899086 gactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgggtcaaggatctatgtga 10899157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 219 - 274
Target Start/End: Original strand, 29019342 - 29019397
Alignment:
Q  219 tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
    |||||||||||||||||||| |||| |   ||||||||||||||||||||||||||    
T  29019342 tttaagttattttggtcacacataagtcctttaagtttgtaaacgttttcaattta 29019397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 219 - 293
Target Start/End: Complemental strand, 4048456 - 4048382
Alignment:
Q  219 tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattctttttaccacatcatc 293  Q
    |||||||||||||||| ||| |||| |   |||||||||||||| ||||| ||||| ||||| ||||||||||||    
T  4048456 tttaagttattttggttacacataagtcctttaagtttgtaaacattttcgatttagtctttctaccacatcatc 4048382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 274
Target Start/End: Complemental strand, 29710655 - 29710508
Alignment:
Q  126 ctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtc-tttaag 224  Q
    |||||||||||  |||||||||||||  ||| ||||| ||||||||  || ||||||| |||  ||||||||| |||||||||   | ||||| ||||||    
T  29710655 ctttaagtttgacgtttgtaacagattggtc-ttttaggttattttg-gtaacacataagtcatttaagtttgagatttgtaacggattggtcctttaag 29710558  T
Q  225 ttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
    ||||||| |||||| |||| |   |||||||||||||  |||||||||||    
T  29710557 ttattttcgtcacacataagtcatttaagtttgtaaaacttttcaattta 29710508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 274
Target Start/End: Complemental strand, 40951917 - 40951832
Alignment:
Q  190 ttaagtttgcgatttgtaataaaatggtc-tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
    ||||||||| | ||||||||| | || || |||||||||||||||||||| ||||||   |||||||||||||| ||||| |||||    
T  40951917 ttaagtttgaggtttgtaatagattgatcatttaagttattttggtcacacataaatcatttaagtttgtaaacattttctattta 40951832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 311 - 387
Target Start/End: Original strand, 44293958 - 44294035
Alignment:
Q  311 actaaatcaaaaacgtttataaacttaaag-acttatttgtgactaaaataatttaaaagatgaatctattacaaacc 387  Q
    |||| ||| |||| ||||| |||||||||| ||||||||||||| ||||||| ||||| ||| ||||| |||||||||    
T  44293958 actatatcgaaaatgtttacaaacttaaagtacttatttgtgaccaaaataacttaaaggatcaatctgttacaaacc 44294035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 159 - 274
Target Start/End: Original strand, 4048236 - 4048351
Alignment:
Q  159 tttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtc-tttaagttattttggtcacaaataaatttgttaagtttg 257  Q
    |||||||||||||  |||||||||| || | |||||| || | ||||||| | | ||||| ||||||||||  |||||||| ||||||   | |||||||    
T  4048236 tttaagttattttg-gtcacacataagttctttaagtctgaggtttgtaacatattggtcctttaagttataatggtcacatataaatccttgaagtttg 4048334  T
Q  258 taaacgttttcaattta 274  Q
    |||||||||||||||||    
T  4048335 taaacgttttcaattta 4048351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 159 - 274
Target Start/End: Original strand, 22750350 - 22750465
Alignment:
Q  159 tttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtc-tttaagttattttggtcacaaataaatttgttaagtttg 257  Q
    |||||||||||||  |||||||||| |||  |||| |||| | ||||||||| | || || ||||| ||||||| |||| | |||||| | |||||||||    
T  22750350 tttaagttattttg-gtcacacataagtcatttaattttgaggtttgtaatatattgatcatttaaattatttttgtcatacataaatcttttaagtttg 22750448  T
Q  258 taaacgttttcaattta 274  Q
    | |||||||||||||||    
T  22750449 tgaacgttttcaattta 22750465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 126 - 198
Target Start/End: Complemental strand, 31453117 - 31453047
Alignment:
Q  126 ctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttg 198  Q
    ||||||||||| ||||||||||||||  || | |||||||||||||| |||||||||| |||| |||||||||    
T  31453117 ctttaagtttgaggtttgtaacagattagtta-tttaagttattttt-gtcacacataagtcctttaagtttg 31453047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 249 - 329
Target Start/End: Original strand, 41666268 - 41666348
Alignment:
Q  249 ttaagtttgtaaacgttttcaatttattctttttaccacatcatcttttggttaatagaatcactaaatcaaaaacgttta 329  Q
    |||||||||||||||||| | ||||| || |||| ||||||||||||||   ||||||||  |||||||| |||| |||||    
T  41666268 ttaagtttgtaaacgtttacgatttaatccttttgccacatcatcttttttgtaatagaaggactaaatcgaaaatgttta 41666348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 311 - 386
Target Start/End: Complemental strand, 43258395 - 43258319
Alignment:
Q  311 actaaatcaaaaacgtttataaacttaaag-acttatttgtgactaaaataatttaaaagatgaatctattacaaac 386  Q
    |||||||| |||| ||||| |||||||||  |||||| |||||| ||||||| ||||| ||| ||||||||||||||    
T  43258395 actaaatcgaaaatgtttacaaacttaaaacacttatgtgtgacaaaaataacttaaatgatcaatctattacaaac 43258319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 313 - 367
Target Start/End: Original strand, 6694718 - 6694773
Alignment:
Q  313 taaatcaaaaacgtttataaacttaaa-gacttatttgtgactaaaataatttaaa 367  Q
    |||||| |||||||||||||||||||| ||||||| |||||| ||||||| |||||    
T  6694718 taaatcgaaaacgtttataaacttaaaggacttatgtgtgaccaaaataacttaaa 6694773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 8375596 - 8375667
Alignment:
Q  1 gactaaagtgataacgaaagtgcagagtcaatgatttcttcgtatttaatcatgggtcaaggacctttgtga 72  Q
    ||||||| |||||||| |||||||||||||   | ||||| ||||||||||||| |||| |||||| |||||    
T  8375596 gactaaattgataacggaagtgcagagtcagaaacttctttgtatttaatcatgagtcagggacctatgtga 8375667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 39708213 - 39708142
Alignment:
Q  1 gactaaagtgataacgaaagtgcagagtcaatgatttcttcgtatttaatcatgggtcaaggacctttgtga 72  Q
    |||||||||||||||| ||||||| ||||  ||| ||||| ||||| |||| || |||| ||||||||||||    
T  39708213 gactaaagtgataacggaagtgcaaagtcggtgacttctttgtattcaatcttgagtcatggacctttgtga 39708142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 48777366 - 48777303
Alignment:
Q  1 gactaaagtgataacgaaagtgcagagtcaatgatttcttcgtatttaatcatgggtcaaggac 64  Q
    |||||||||||||||| |||||||||||||  || || || ||||||||||||| |||| ||||    
T  48777366 gactaaagtgataacggaagtgcagagtcagggaattatttgtatttaatcatgagtcagggac 48777303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 294 - 387
Target Start/End: Complemental strand, 22750484 - 22750390
Alignment:
Q  294 ttttggttaatagaatcactaaatcaaaaacgtttataaacttaaa-gacttatttgtgactaaaataatttaaaagatgaatctattacaaacc 387  Q
    |||||||||||| |||  ||||||  |||||||| | ||||||||| || |||| | |||| ||||||||||||| ||| ||| |||||||||||    
T  22750484 ttttggttaataaaatggctaaattgaaaacgttcacaaacttaaaagatttatgtatgacaaaaataatttaaatgatcaatatattacaaacc 22750390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 158 - 243
Target Start/End: Complemental strand, 42313095 - 42313010
Alignment:
Q  158 ttttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtc-tttaagttattttggtcacaaataa 243  Q
    ||||||||||||||  |||||||||| |||| |||| ||||  |||||||| ||| ||||| ||||| |||||||||||||| ||||    
T  42313095 ttttaagttattttg-gtcacacataagtcctttaaatttgatatttgtaacaaattggtcctttaaattattttggtcacacataa 42313010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 171
Target Start/End: Complemental strand, 6069336 - 6069292
Alignment:
Q  126 ctttaagtttgcggtttgtaacagatatgtcattttaagttatttt 171  Q
    ||||||||||| ||||||||||| |||||||| |||||||||||||    
T  6069336 ctttaagtttgaggtttgtaacatatatgtca-tttaagttatttt 6069292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 12669868 - 12669917
Alignment:
Q  1 gactaaagtgataacgaaagtgcagagtcaatgatttcttcgtatttaat 50  Q
    ||||||| |||||||||||||||||||| |||||| | || |||||||||    
T  12669868 gactaaattgataacgaaagtgcagagtgaatgatctttttgtatttaat 12669917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 13578333 - 13578382
Alignment:
Q  1 gactaaagtgataacgaaagtgcagagtcaatgatttcttcgtatttaat 50  Q
    |||||||||||||||| ||||||||||||| ||| || || |||||||||    
T  13578333 gactaaagtgataacggaagtgcagagtcagtgacttatttgtatttaat 13578382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 238
Target Start/End: Original strand, 29710322 - 29710433
Alignment:
Q  126 ctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggt-ctttaag 224  Q
    |||||||||||  |||||||||||||   ||  ||||||||| |||| |||||| ||| |||| |||||||||  |||||||| | | |||| |||||||    
T  29710322 ctttaagtttgacgtttgtaacagattaatc-ctttaagtta-ttttggtcacatataagtcctttaagtttgatatttgtaacatattggtcctttaag 29710419  T
Q  225 ttattttggtcaca 238  Q
    ||||||||||||||    
T  29710420 ttattttggtcaca 29710433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 387
Target Start/End: Original strand, 40951830 - 40951907
Alignment:
Q  311 actaaatcaaaaacgtttataaacttaaa-gacttatttgtgactaaaataatttaaaagatgaatctattacaaacc 387  Q
    |||||||  |||| ||||| ||||||||| || |||| |||||| ||||||| ||||| ||| |||||||||||||||    
T  40951830 actaaatagaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataacttaaatgatcaatctattacaaacc 40951907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 44333243 - 44333178
Alignment:
Q  7 agtgataacgaaagtgcagagtcaatgatttcttcgtatttaatcatgggtcaaggacctttgtga 72  Q
    |||||||||| |||||||||||||  || || || ||||||||||||| |||| |||||| |||||    
T  44333243 agtgataacggaagtgcagagtcagagacttatttgtatttaatcatgagtcagggacctatgtga 44333178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 5930146 - 5930217
Alignment:
Q  1 gactaaagtgataacgaaagtgcagagtcaatgatttcttcgtatttaatcatgggtcaaggacctttgtgat 73  Q
    |||||||||||||||| ||||||| |||| |  ||||||| |||||||||| || || | |||||||||||||    
T  5930146 gactaaagtgataacggaagtgcacagtcgaaaatttctt-gtatttaatcctgagttagggacctttgtgat 5930217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 48647456 - 48647528
Alignment:
Q  1 gactaaagtgataacgaaagtgcagagtcaatgatttcttcgtatttaatcatgggtcaaggacctttgtgat 73  Q
    ||||||||||||||| |||||||||||| |  || || || |||||||||| || |||| |||||| ||||||    
T  48647456 gactaaagtgataacaaaagtgcagagtgagagacttatttgtatttaatcctgagtcagggacctatgtgat 48647528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 5e-21; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 126 - 367
Target Start/End: Original strand, 21598447 - 21598689
Alignment:
Q  126 ctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtc-tttaag 224  Q
    ||||||||||| ||||| ||||||||  ||| ||| ||||||||||  ||  |||||| |||| ||||||||| | ||||||| | | ||||| ||||||    
T  21598447 ctttaagtttgaggtttataacagattggtccttt-aagttattttg-gttgcacataagtcctttaagtttgaggtttgtaacagattggtcctttaag 21598544  T
Q  225 ttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattctttttaccacatcatct-tttggttaatagaatcactaaatcaaaaa 323  Q
    |||||||| || || |||| |   |||||||| ||||||||||| ||||| || || ||||||||||| | ||||||||| | ||  |||||||  ||||    
T  21598545 ttattttgatcccacataagtcctttaagtttataaacgttttcgatttagtccttctaccacatcatatgtttggttaacataaggactaaattgaaaa 21598644  T
Q  324 cgtttataaacttaaa-gacttatttgtgactaaaataatttaaa 367  Q
    |||||| ||||||||| ||||||| |||||| ||||||| |||||    
T  21598645 cgtttacaaacttaaaggacttatgtgtgaccaaaataacttaaa 21598689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 126 - 274
Target Start/End: Complemental strand, 21598781 - 21598634
Alignment:
Q  126 ctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtc-tttaag 224  Q
    ||||||||||| ||||||||||||||  ||| ||| ||||||||||   || |||||| |||| ||||||||| | ||||||| | | ||||| ||||||    
T  21598781 ctttaagtttgaggtttgtaacagattggtccttt-aagttattttgt-tctcacataagtcctttaagtttgtggtttgtaacatattggtcctttaag 21598684  T
Q  225 ttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
    |||||||||||||| |||| |   ||||||||||||||||||||||||||    
T  21598683 ttattttggtcacacataagtcctttaagtttgtaaacgttttcaattta 21598634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 104 - 274
Target Start/End: Original strand, 17136824 - 17136993
Alignment:
Q  104 aggctgaattacaccagatgttctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatt 203  Q
    ||||| |||||||||||| || |||||| |||| ||||||||| ||||  ||| ||| ||||||||||  ||| |||||| |||  ||||||||| | ||    
T  17136824 aggctaaattacaccagaggtcctttaaatttgaggtttgtaatagattagtccttt-aagttattttg-gtctcacataagtcatttaagtttgaggtt 17136921  T
Q  204 tgtaataaaatggt-ctttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
    ||||| | | |  | ||||||||||||||||||||| |||| | | ||||||||||||||||||||||||||    
T  17136922 tgtaacagattaattctttaagttattttggtcacacataagtcttttaagtttgtaaacgttttcaattta 17136993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 175 - 340
Target Start/End: Original strand, 9982719 - 9982885
Alignment:
Q  175 tcacacataggtccgttaagtttgcgatttgtaataaaatggtc-tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattt 273  Q
    ||||||||| |||| ||||||||| | ||||||| | | || || ||| ||||||||||||| || |||| | | |||||||||||||||||||||||||    
T  9982719 tcacacataagtcctttaagtttgagttttgtaacagattgatcctttgagttattttggtcgcacataagtcttttaagtttgtaaacgttttcaattt 9982818  T
Q  274 attctttttaccacatcatc-ttttggttaatagaatcactaaatcaaaaacgtttataaacttaaag 340  Q
    | || || |  ||||||||| |||||||||| ||||  |||||||  |||| ||||| ||||||||||    
T  9982819 agtccttctgtcacatcatcgttttggttaacagaaggactaaattgaaaa-gtttacaaacttaaag 9982885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 293 - 387
Target Start/End: Complemental strand, 24059834 - 24059739
Alignment:
Q  293 cttttggttaatagaatcactaaatcaaaaacgtttataaacttaaa-gacttatttgtgactaaaataatttaaaagatgaatctattacaaacc 387  Q
    ||||||||||||||||  |||| || ||||||||||| ||||||||| ||||||| |||||| ||||||||||||| ||| ||||| ||| |||||    
T  24059834 cttttggttaatagaaggactagattaaaaacgtttacaaacttaaaggacttatgtgtgaccaaaataatttaaatgatcaatctgttataaacc 24059739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 180 - 274
Target Start/End: Complemental strand, 2761685 - 2761590
Alignment:
Q  180 cataggtccgttaagtttgcgatttgtaataaaatggtctttaag-ttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
    ||||||||| |||| ||||  |||| ||||||| |||||||| || |||||||| ||||| ||||||   ||||||||||||||||||||||||||    
T  2761685 cataggtcctttaaatttgaaatttataataaattggtcttttaggttattttgatcacacataaatcctttaagtttgtaaacgttttcaattta 2761590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 218 - 367
Target Start/End: Complemental strand, 17342685 - 17342534
Alignment:
Q  218 ctttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattctttttaccacatcatc-ttttggttaatagaatcactaaa 316  Q
    ||||||||||||| ||||||| |||| |   |||||||||||||||||||||||||| || || |  ||||||||| ||||||||||  |||  ||||||    
T  17342685 ctttaagttatttcggtcacacataagtcctttaagtttgtaaacgttttcaatttagtcattctgacacatcatcattttggttaacggaaggactaaa 17342586  T
Q  317 tcaaaaacgtttataaacttaaa-gacttatttgtgactaaaataatttaaa 367  Q
    |  |||||  ||| ||||||||| ||||||| ||||||  |||||| |||||    
T  17342585 ttgaaaacacttacaaacttaaaggacttatgtgtgaccgaaataacttaaa 17342534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 219 - 340
Target Start/End: Original strand, 2761495 - 2761617
Alignment:
Q  219 tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattctttttaccacatcatc-ttttggttaatagaatcactaaat 317  Q
    |||||||||||||| ||||| |||| |   |||||||||||||||||||||||||| || || |  |||| |||| || ||||||| ||||  |||||||    
T  2761495 tttaagttattttgatcacacataagtcctttaagtttgtaaacgttttcaatttagtccttctgacacaacatcgttctggttaacagaaggactaaat 2761594  T
Q  318 caaaaacgtttataaacttaaag 340  Q
      |||||||||| ||||||||||    
T  2761595 tgaaaacgtttacaaacttaaag 2761617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 218 - 295
Target Start/End: Original strand, 35050629 - 35050706
Alignment:
Q  218 ctttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattctttttaccacatcatctt 295  Q
    |||||||||||||| |||||| |||||| | |||||||| ||||||||||| ||||| || || | ||||||||||||    
T  35050629 ctttaagttatttttgtcacacataaatcttttaagtttataaacgttttcgatttagtccttctgccacatcatctt 35050706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 104 - 274
Target Start/End: Complemental strand, 10356619 - 10356450
Alignment:
Q  104 aggctgaattacaccagatgttctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatt 203  Q
    ||||| ||||||| | || || |||||||||||  |||||||||||||  ||| ||| | ||||||||  || ||||||| |||| ||||||||| ||||    
T  10356619 aggctaaattacatctgaggtcctttaagtttgacgtttgtaacagattggtccttt-aggttattttg-gtaacacataagtcctttaagtttgagatt 10356522  T
Q  204 tgtaataaaatggtcttt-aagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
    ||||| | | |||||||| |||||||||| | |||| |||| |   |||||||||||||  |||||||||||    
T  10356521 tgtaacagattggtcttttaagttatttttgccacacataagtcctttaagtttgtaaaacttttcaattta 10356450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 238
Target Start/End: Original strand, 10356263 - 10356374
Alignment:
Q  126 ctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatgg-tctttaag 224  Q
    ||||||||||| ||||||||||| ||  |||  ||||| ||| |||| |||||||||| |||| |||||||||  |||||||| | | ||| ||||||||    
T  10356263 ctttaagtttgaggtttgtaacaaattagtc-ctttaaatta-ttttggtcacacataagtcctttaagtttgatatttgtaacagattggttctttaag 10356360  T
Q  225 ttattttggtcaca 238  Q
    ||||||||||||||    
T  10356361 ttattttggtcaca 10356374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 223 - 386
Target Start/End: Original strand, 13273163 - 13273328
Alignment:
Q  223 agttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattctttttaccacatcatc-ttttggttaatagaatcactaaatcaaa 321  Q
    ||||||||||||| || |||| ||  |||||||||||||| ||||||||||| ||| | | | ||| |||| |||||||||  | ||  |||||||  ||    
T  13273163 agttattttggtcccacataagttatttaagtttgtaaacattttcaatttagtctgtctgcgacaacatcgttttggttagcataaaaactaaattgaa 13273262  T
Q  322 aacgtttataaacttaaag-acttatttgtgactaaaataatttaaaagatgaatctattacaaac 386  Q
    || ||| | |||||||||| |||||| |||||| ||||||| ||||| ||  ||||| ||||||||    
T  13273263 aaagttcacaaacttaaagaacttatgtgtgacaaaaataacttaaatgaccaatctgttacaaac 13273328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 274
Target Start/End: Original strand, 35225400 - 35225547
Alignment:
Q  126 ctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtc-tttaag 224  Q
    ||||||||||| ||||||||||| ||  ||| ||| ||||||||||  |||| |||||  ||| ||||||||  | ||||||| | | ||||| ||||||    
T  35225400 ctttaagtttgaggtttgtaacaaattggtccttt-aagttattttg-gtcatacataaatcctttaagtttaaggtttgtaacagattggtcctttaag 35225497  T
Q  225 ttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
    ||||| || ||||| |||| ||  |||||||||||||||||||| |||||    
T  35225498 ttattctgatcacacataagttctttaagtttgtaaacgttttcgattta 35225547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 201 - 261
Target Start/End: Complemental strand, 364259 - 364199
Alignment:
Q  201 atttgtaataaaatggtctttaagttattttggtcacaaataaatttgttaagtttgtaaa 261  Q
    |||||||||| | || |||||||||||||||||||||| |||| | | |||||||||||||    
T  364259 atttgtaatagattgatctttaagttattttggtcacacataagtcttttaagtttgtaaa 364199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 127 - 274
Target Start/End: Complemental strand, 13273399 - 13273254
Alignment:
Q  127 tttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtc-tttaagt 225  Q
    |||||||||| || ||||||||||   ||| |||||| |||||||| ||||||||||  ||| ||||||||  | ||||||| | | ||||| |||||||    
T  13273399 tttaagtttgaggattgtaacagaatagtccttttaa-ttattttt-gtcacacataaatcctttaagttttag-tttgtaacagattggtcatttaagt 13273303  T
Q  226 tattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
    |||||| |||||| |||| ||  |||||||||| ||| |||||||||||    
T  13273302 tatttttgtcacacataagttctttaagtttgtgaactttttcaattta 13273254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 270
Target Start/End: Original strand, 364079 - 364130
Alignment:
Q  219 tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaa 270  Q
    |||||||| |||||||||||||||| ||  |||||||||||||| |||||||    
T  364079 tttaagttgttttggtcacaaataagttctttaagtttgtaaacattttcaa 364130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 274
Target Start/End: Original strand, 31091261 - 31091315
Alignment:
Q  219 tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
    |||||||||||||| ||| | |||||||| |||| |||||||||||||||||||||    
T  31091261 tttaagttattttgatcaaacataaattt-ttaaatttgtaaacgttttcaattta 31091315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 387
Target Start/End: Complemental strand, 364152 - 364060
Alignment:
Q  295 tttggttaatagaatcactaaatcaaaaacgtttataaacttaaag-acttatttgtgactaaaataatttaaaagatgaatctattacaaacc 387  Q
    ||||||||||||||| | ||| |  |||| ||||| |||||||||| ||||||||||||| |||| || |||||| || ||||| |||||||||    
T  364152 tttggttaatagaatgattaagttgaaaatgtttacaaacttaaagaacttatttgtgaccaaaacaacttaaaa-atcaatctgttacaaacc 364060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 387
Target Start/End: Complemental strand, 21598596 - 21598519
Alignment:
Q  311 actaaatcaaaaacgtttataaacttaaa-gacttatttgtgactaaaataatttaaaagatgaatctattacaaacc 387  Q
    |||||||| |||||||||||||||||||| ||||||| || ||  ||||||| ||||| ||  ||||| |||||||||    
T  21598596 actaaatcgaaaacgtttataaacttaaaggacttatgtgggatcaaaataacttaaaggaccaatctgttacaaacc 21598519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 367
Target Start/End: Complemental strand, 35050687 - 35050630
Alignment:
Q  311 actaaatcaaaaacgtttataaactt-aaagacttatttgtgactaaaataatttaaa 367  Q
    |||||||| ||||||||||||||||| ||||| |||| |||||| ||||||| |||||    
T  35050687 actaaatcgaaaacgtttataaacttaaaagatttatgtgtgacaaaaataacttaaa 35050630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 274
Target Start/End: Complemental strand, 35225682 - 35225597
Alignment:
Q  190 ttaagtttgcgatttgtaataaaatggtc-tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
    ||||||||| ||||||||||||| || || ||| ||||||||| |||||| |||| |    ||||||||||||||| |||||||||    
T  35225682 ttaagtttgggatttgtaataaattgatcatttgagttatttttgtcacacataattcctataagtttgtaaacgtattcaattta 35225597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 24621155 - 24621115
Alignment:
Q  33 gatttcttcgtatttaatcatgggtcaaggacctttgtgat 73  Q
    |||||||| ||||||||||||| ||||||||||||| ||||    
T  24621155 gatttctttgtatttaatcatgagtcaaggacctttatgat 24621115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 31219062 - 31218994
Alignment:
Q  4 taaagtgataacgaaagtgcagagtcaatgatttcttcgtatttaatcatgggtcaaggacctttgtga 72  Q
    ||||||||||||| |||||||||||||   | ||||| |||||||||| || || |||||||| |||||    
T  31219062 taaagtgataacggaagtgcagagtcaggaacttctttgtatttaatcctgagttaaggacctatgtga 31218994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 103 - 387
Target Start/End: Original strand, 36694292 - 36694577
Alignment:
Q  103 aaggctgaattacaccagatgttctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgat 202  Q
    |||||| |||||||| |  ||||||||||||||| |||||||||||||    || ||||||||||| ||  ||| |||| | |||  || ||||||  ||    
T  36694292 aaggctaaattacacaatgtgttctttaagtttgtggtttgtaacagactaatccttttaagttatgttg-gtcgcacacaagtcttttgagtttgaaat 36694390  T
Q  203 ttgtaataaaatggtctttaagttattttggtcacaaataaatt-tgttaagtttgtaaacgttttcaatttattctttttaccacatcatc-ttttggt 300  Q
    |||||| | | | || |||||||||||||||||||| |||| |  | |||||||||||||  ||||||||||| || || | |||||||||| |||||||    
T  36694391 ttgtaacagattagt-tttaagttattttggtcacatataagtccttttaagtttgtaaatattttcaatttagtccttctgccacatcatcattttggt 36694489  T
Q  301 taatagaatcactaaatcaaaaacgtttataaacttaaag-acttatttgtgactaaaataatttaaaagatgaatctattacaaacc 387  Q
    ||| ||||  |||||||  |||   |||| |||||||||| |||||| |||||| ||||||||||||| ||  ||||| |||||||||    
T  36694490 taacagaaagactaaattgaaattttttacaaacttaaaggacttatgtgtgaccaaaataatttaaaggaccaatctgttacaaacc 36694577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 218 - 368
Target Start/End: Original strand, 31630158 - 31630319
Alignment:
Q  218 ctttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattctttttaccacatcat-----------cttttggttaatag 306  Q
    ||||||||||||||||||||| |||| | | |||||||||||||||||||| ||||| || || | |||||||||           | ||||||||| |     
T  31630158 ctttaagttattttggtcacacataagtcttttaagtttgtaaacgttttcgatttagtccttctgccacatcatcgtttttgtaacatttggttaacaa 31630257  T
Q  307 aatcactaaatcaaaaacgtttataaacttaaagacttatttgtgactaaaataatttaaaa 368  Q
    ||| |||||||  ||||| |||| |||||||||||||||| |||||| ||||||| ||||||    
T  31630258 aatgactaaattgaaaacatttacaaacttaaagacttatgtgtgaccaaaataacttaaaa 31630319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 274
Target Start/End: Complemental strand, 31630377 - 31630264
Alignment:
Q  159 tttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtctttaagttattttggtcacaaataaatttgttaagtttgt 258  Q
    |||||||||||||  |||||||| | |||| |||| |||| | || |||||| | |||| |||||||||||||||||||| |||| | | ||||||||||    
T  31630377 tttaagttattttg-gtcacacaaaagtcctttaaatttgaggttagtaatagattggtttttaagttattttggtcacacataagtct-ttaagtttgt 31630280  T
Q  259 aaacgttttcaattta 274  Q
    ||| ||||||||||||    
T  31630279 aaatgttttcaattta 31630264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 274
Target Start/End: Complemental strand, 5009507 - 5009362
Alignment:
Q  126 ctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtc-tttaag 224  Q
    ||||||||||| ||||||||||| ||  ||| ||||||||| ||||  |||||||||| || | ||||||||| | ||||||| | | || || ||||||    
T  5009507 ctttaagtttgaggtttgtaacatattggtc-ttttaagttttttt--gtcacacataagtactttaagtttgaggtttgtaacatattgatcctttaag 5009411  T
Q  225 ttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
    ||||||| |||||| ||||   | ||||||||||||||||||||||||||    
T  5009410 ttatttttgtcacacataatcct-ttaagtttgtaaacgttttcaattta 5009362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 387
Target Start/End: Original strand, 25894963 - 25895179
Alignment:
Q  184 ggtccgttaagtttgcgatttgtaataaaatggtc-tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattcttttt 282  Q
    ||||| ||||||||| ||||||||| ||| ||||| ||||||||||||||||| || |||| |   |||||||||||||| ||||  ||||| || || |    
T  25894963 ggtcctttaagtttgagatttgtaacaaattggtcctttaagttattttggtcgcatataagtcctttaagtttgtaaacatttttgatttagtccttct 25895062  T
Q  283 accacatcatctttt-----------ggttaatagaatcactaaatcaaaaacgtttataaacttaaag-acttatttgtgactaaaataatttaaaaga 370  Q
    ||||||||||| |||           |||||| | ||  |||||||  |||||||||| ||||| |||| |||||| |||||||||||||| ||||| |     
T  25895063 accacatcatcgtttttgtaatgtttggttaacaaaaggactaaattgaaaacgtttacaaactgaaaggacttatgtgtgactaaaataacttaaaggt 25895162  T
Q  371 tgaatctattacaaacc 387  Q
    | ||||| |||||||||    
T  25895163 tcaatctgttacaaacc 25895179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 126 - 274
Target Start/End: Original strand, 44556527 - 44556674
Alignment:
Q  126 ctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggt-ctttaag 224  Q
    ||||||||||  ||||||||| ||||  ||||||| ||||| ||||| |||||||||| |||| ||||||||| | ||||||||||| || | ||||||     
T  44556527 ctttaagtttaaggtttgtaatagattggtcattt-aagtttttttt-gtcacacataagtcctttaagtttgaggtttgtaataaattgatcctttaac 44556624  T
Q  225 ttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
    |||||||| ||||| |||| |   ||||||||  | ||||||||||||||    
T  44556625 ttattttgatcacacataagtcctttaagtttacatacgttttcaattta 44556674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 285 - 387
Target Start/End: Complemental strand, 44556703 - 44556599
Alignment:
Q  285 cacatcatc-ttttggttaatagaatcactaaatcaaaaacgtttataaacttaaa-gacttatttgtgactaaaataatttaaaagatgaatctattac 382  Q
    ||||||||| |||||||||||||||  |||||||  ||||||| | |||||||||| ||||||| |||||  ||||||| ||||| ||| ||| ||||||    
T  44556703 cacatcatcgttttggttaatagaagaactaaattgaaaacgtatgtaaacttaaaggacttatgtgtgatcaaaataagttaaaggatcaatttattac 44556604  T
Q  383 aaacc 387  Q
    |||||    
T  44556603 aaacc 44556599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 123 - 274
Target Start/End: Original strand, 5009157 - 5009312
Alignment:
Q  123 gttctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgta----ataaaatggtc 218  Q
    |||||||||||||| ||||||||| ||||  ||| |||||||||| ||||  ||||||||| |||  ||||||||| | ||||||    || || | |||    
T  5009157 gttctttaagtttgaggtttgtaatagattggtccttttaagtta-ttttgttcacacataagtcatttaagtttgtggtttgtaacagattaatttgtc 5009255  T
Q  219 -tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
     |||||||||||||| ||||| |||| | | ||| ||||||||| ||||||||||||    
T  5009256 atttaagttattttgatcacacataagtcttttatgtttgtaaatgttttcaattta 5009312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 249 - 339
Target Start/End: Original strand, 8035393 - 8035484
Alignment:
Q  249 ttaagtttgtaaacgttttcaatttattctttttaccacatcatc-ttttggttaatagaatcactaaatcaaaaacgtttataaacttaaa 339  Q
    |||||||||||||  |||| |||||| || || || ||||||||| |||||||||| | ||| ||||||| ||||||||||| |||||||||    
T  8035393 ttaagtttgtaaaaatttttaatttaatcattctatcacatcatcattttggttaacataatgactaaattaaaaacgtttacaaacttaaa 8035484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 103 - 274
Target Start/End: Complemental strand, 14166545 - 14166377
Alignment:
Q  103 aaggctgaattacaccagatgttctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgat 202  Q
    |||||| ||||||| ||| |||  ||||||||||  |||||||| ||||| ||| ||| ||||||||||| |||||||||| |||  |||| |||| | |    
T  14166545 aaggctaaattacatcaggtgtcatttaagtttgatgtttgtaatagataggtccttt-aagttattttt-gtcacacataagtct-ttaactttgaggt 14166449  T
Q  203 ttgtaataaaatggtctttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
    | |||| ||| || | |||||||||| ||| ||||| |||||    |||||||| |||||||||||||||||    
T  14166448 tcgtaacaaattgatttttaagttatcttgttcacacataaaccctttaagtttttaaacgttttcaattta 14166377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 104 - 274
Target Start/End: Complemental strand, 25895273 - 25895104
Alignment:
Q  104 aggctgaattacaccagatgttctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatt 203  Q
    ||||| |||||||| ||  || ||||||||||| ||||||||||||||  ||| ||| ||||||||||  |||||||| | |||| ||||||||  | ||    
T  25895273 aggctaaattacactaggagtcctttaagtttgaggtttgtaacagattggtccttt-aagttattttg-gtcacacaaaagtcctttaagtttaaggtt 25895176  T
Q  204 tgtaataaaatggtc-tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
    ||||| | | ||  | ||||||||||||| |||||| |||| |   || |||||||||||||||||||||||    
T  25895175 tgtaacagattgaacctttaagttattttagtcacacataagtcctttcagtttgtaaacgttttcaattta 25895104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 126 - 243
Target Start/End: Complemental strand, 36217276 - 36217163
Alignment:
Q  126 ctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtctttaagt 225  Q
    ||||||||||| ||||||||||| ||   | |||||||||||||||  |||||||||| |||  ||||||||| | ||||||| | | || ||||||| |    
T  36217276 ctttaagtttgaggtttgtaacaaat---tgattttaagttattttg-gtcacacataagtcttttaagtttgaggtttgtaacagattgatctttaaat 36217181  T
Q  226 tattttggtcacaaataa 243  Q
    ||||||||||||| ||||    
T  36217180 tattttggtcacacataa 36217163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 274
Target Start/End: Original strand, 9500891 - 9501054
Alignment:
Q  110 aattacaccagatgttctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaat 209  Q
    |||||||||||  || ||||||||||  ||| ||||||||||  ||| ||| ||||||||||  ||||||| || |||| ||||||||| | |||||||     
T  9500891 aattacaccaggggtcctttaagttttaggtctgtaacagattggtccttt-aagttattttg-gtcacacttaagtcccttaagtttgaggtttgtaac 9500988  T
Q  210 aaaatggt-ctttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
    | |  | | |||||||||||||| |||||| |||| |   |||||||||||||||||||| |||||    
T  9500989 agatcgcttctttaagttattttagtcacacataagtcctttaagtttgtaaacgttttcgattta 9501054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 311 - 367
Target Start/End: Complemental strand, 9501056 - 9500999
Alignment:
Q  311 actaaatcaaaaacgtttataaacttaaag-acttatttgtgactaaaataatttaaa 367  Q
    |||||||| |||||||||| |||||||||| |||||| |||||||||||||| |||||    
T  9501056 actaaatcgaaaacgtttacaaacttaaaggacttatgtgtgactaaaataacttaaa 9500999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 38985002 - 38985051
Alignment:
Q  1 gactaaagtgataacgaaagtgcagagtcaatgatttcttcgtatttaat 50  Q
    |||||||||||||||| |||||||||||||| || ||||| |||||||||    
T  38985002 gactaaagtgataacggaagtgcagagtcaaggacttctttgtatttaat 38985051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 387
Target Start/End: Original strand, 39442268 - 39442495
Alignment:
Q  159 tttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtc-tttaagttattttggtcacaaataaatttgttaagtttg 257  Q
    ||||| |||||||| |||||||||| |||  ||||||||| ||||||||| ||| || || ||||| ||| |||||| |||  ||| |   |||||||||    
T  39442268 tttaaattattttt-gtcacacataagtcatttaagtttgagatttgtaacaaattgatcatttaatttactttggttacatgtaagtcatttaagtttg 39442366  T
Q  258 taaacgttttcaatttattctttttaccacatca-tcttttggttaatagaatcactaaatcaaaaacgtttataaacttaaagacttatttgtgactaa 356  Q
    |||| || ||||||||| |  || || ||||||| | |||||||||| |||   |||||||  |||||||||| ||| | ||||| || | |||||| ||    
T  39442367 taaaggtattcaatttagttattctaacacatcattgttttggttaaaaga---actaaattgaaaacgtttacaaattcaaagatttgtgtgtgaccaa 39442463  T
Q  357 aataatttaaaa-gatgaatctattacaaacc 387  Q
    ||||| |||||| ||| ||||| |||||||||    
T  39442464 aataacttaaaaggattaatctgttacaaacc 39442495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 320 - 387
Target Start/End: Complemental strand, 12612528 - 12612460
Alignment:
Q  320 aaaacgtttataaacttaaa-gacttatttgtgactaaaataatttaaaagatgaatctattacaaacc 387  Q
    ||||| |||| ||||||||| ||||||| |||||  ||||||||||||||||  |||||||||||||||    
T  12612528 aaaacatttacaaacttaaatgacttatgtgtgatcaaaataatttaaaagaccaatctattacaaacc 12612460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 274
Target Start/End: Complemental strand, 8035513 - 8035458
Alignment:
Q  219 tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
    |||||||||||||||| | | |||| ||| ||||||||||||||||||| ||||||    
T  8035513 tttaagttattttggttatacataagttttttaagtttgtaaacgtttttaattta 8035458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 274
Target Start/End: Complemental strand, 11791842 - 11791787
Alignment:
Q  219 tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
    |||||||||||||||||||| |||| |    |||||||||||||||||||||||||    
T  11791842 tttaagttattttggtcacacataagtcctataagtttgtaaacgttttcaattta 11791787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 31091540 - 31091611
Alignment:
Q  1 gactaaagtgataacgaaagtgcagagtcaatgatttcttcgtatttaatcatgggtcaaggacctttgtga 72  Q
    |||||||||||||||| |||||||||||||  || || || |||||||||| || |||| |||||| |||||    
T  31091540 gactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcagggacctatgtga 31091611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 32766252 - 32766323
Alignment:
Q  1 gactaaagtgataacgaaagtgcagagtcaatgatttcttcgtatttaatcatgggtcaaggacctttgtga 72  Q
    |||||||||||||||| |||||||||||||  || || || |||||||||| || |||| |||||| |||||    
T  32766252 gactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcagggacctatgtga 32766323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 311 - 364
Target Start/End: Complemental strand, 4511922 - 4511868
Alignment:
Q  311 actaaatcaaaaacgtttataaactt-aaagacttatttgtgactaaaataattt 364  Q
    ||||||| ||||||||||| |||||| |||||||||| ||||| |||||||||||    
T  4511922 actaaattaaaaacgtttacaaacttaaaagacttatgtgtgattaaaataattt 4511868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 17466841 - 17466891
Alignment:
Q  1 gactaaagtgataacgaaagtgcagagtcaatgatttcttcgtatttaatc 51  Q
    |||||||||||||||| |||||||||||||  || ||||| ||||||||||    
T  17466841 gactaaagtgataacggaagtgcagagtcagagacttctttgtatttaatc 17466891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 266
Target Start/End: Original strand, 1316037 - 1316176
Alignment:
Q  126 ctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaa-atggtctttaag 224  Q
    |||||| |||| ||||||||| |||||  || ||| ||||||||||  |||||||||| |||| ||| ||||| | ||||||| | | ||| ||||||||    
T  1316037 ctttaaatttgaggtttgtaatagatagatcgttt-aagttattttg-gtcacacataagtcctttatgtttgaggtttgtaacatatatgttctttaag 1316134  T
Q  225 ttattttggtcacaaataaatttgttaagtttgtaaacgttt 266  Q
    |||||||| || || |||| |   ||||||||||||||||||    
T  1316135 ttattttgatcgcacataagtcctttaagtttgtaaacgttt 1316176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 387
Target Start/End: Original strand, 3876908 - 3877001
Alignment:
Q  295 tttggttaatagaatcactaaatcaaaaacgtttataaacttaaag-acttatttgtgactaaaataatttaaaagatgaatctattacaaacc 387  Q
    ||||||||||||||  |||||||   ||| ||||| | || ||||| |||||| |||||| ||||||| ||||||||| ||| |||||||||||    
T  3876908 tttggttaatagaaggactaaattggaaaggtttacatacgtaaaggacttatgtgtgaccaaaataacttaaaagatcaatttattacaaacc 3877001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 277
Target Start/End: Original strand, 4188657 - 4188714
Alignment:
Q  220 ttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattc 277  Q
    ||||||||||||||||||| | || |   |||||||| ||||||||||||||||||||    
T  4188657 ttaagttattttggtcacacacaagtcctttaagtttctaaacgttttcaatttattc 4188714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 274
Target Start/End: Complemental strand, 4189086 - 4189001
Alignment:
Q  190 ttaagtttgcgatttgtaataaaatggtc-tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
    ||||||||| | ||||||||| |  |||| |||||||||||||| ||||| |||| |   |||||||| |||||||||||||||||    
T  4189086 ttaagtttgaggtttgtaatatataggtcctttaagttattttgatcacatataagtccattaagtttataaacgttttcaattta 4189001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 17466151 - 17466086
Alignment:
Q  1 gactaaagtgataacgaaagtgcagagtcaatgatttcttcgtatttaatcatgggtcaaggacct 66  Q
    ||||||||||| |||| |||||||||||||  ||| |||| |||||||||| || |||||| ||||    
T  17466151 gactaaagtgaaaacggaagtgcagagtcagagatatctttgtatttaatcctgagtcaagaacct 17466086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 295 - 366
Target Start/End: Complemental strand, 4188729 - 4188657
Alignment:
Q  295 tttggttaatagaatcactaaatcaaaaacgtttataaacttaaa-gacttatttgtgactaaaataatttaa 366  Q
    ||||||||||||||| | |||||  |||||||||| ||||||||| ||||| | |||||| ||||||| ||||    
T  4188729 tttggttaatagaatgaataaattgaaaacgtttagaaacttaaaggacttgtgtgtgaccaaaataacttaa 4188657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 295 - 386
Target Start/End: Original strand, 11791769 - 11791861
Alignment:
Q  295 tttggttaatagaatcactaaatcaaaaacgtttataaacttaaag-acttatttgtgactaaaataatttaaaagatgaatctattacaaac 386  Q
    ||||||||| | ||| |||||||  |||||||||| ||||||| || |||||| |||||| ||||||| ||||| ||   |||||||||||||    
T  11791769 tttggttaacaaaatgactaaattgaaaacgtttacaaacttataggacttatgtgtgaccaaaataacttaaatgacatatctattacaaac 11791861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 219 - 286
Target Start/End: Complemental strand, 39442474 - 39442407
Alignment:
Q  219 tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta-ttctttttacca 286  Q
    |||||||||||||||||||| | |||| | | || ||||||||||||||||||||| ||||||| ||||    
T  39442474 tttaagttattttggtcacacacaaatctttgaa-tttgtaaacgttttcaatttagttcttttaacca 39442407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 42847351 - 42847399
Alignment:
Q  104 aggctgaattacaccagatgttctttaagtttgcggtttgtaacagata 152  Q
    ||||| |||||||||| |||| |||||||||||  ||||||||||||||    
T  42847351 aggcttaattacaccacatgtcctttaagtttgacgtttgtaacagata 42847399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 126 - 361
Target Start/End: Original strand, 161406 - 161642
Alignment:
Q  126 ctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggt-ctttaag 224  Q
    ||||||||||| ||||||||||||||  |||  ||||| ||| |||| |||||||||| |||| ||||||||| ||||||||| | | |||| ||||||     
T  161406 ctttaagtttgaggtttgtaacagattggtc-ctttaactta-ttttggtcacacataagtcctttaagtttgagatttgtaacagattggtcctttaac 161503  T
Q  225 ttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattctttttaccacatcat-cttttggttaatagaatcactaaatcaaaaa 323  Q
    ||||||| |||||| |||| |   ||||||||||| |   ||||||| || || |||| | ||||||| ||||||| ||| ||||| |||||||  ||||    
T  161504 ttatttttgtcacacataagtcctttaagtttgtacaaaatttcaatgtagtccttttgcgacatcatccttttggctaacagaatgactaaattgaaaa 161603  T
Q  324 cgtttataaacttaaa-gacttatttgtgactaaaataa 361  Q
    | |||| ||||||||| ||||||| |||||| |||||||    
T  161604 cttttacaaacttaaaggacttatgtgtgaccaaaataa 161642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 274
Target Start/End: Complemental strand, 161708 - 161593
Alignment:
Q  159 tttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtc-tttaagttattttggtcacaaataaatttgttaagtttg 257  Q
    |||||||||||||  |||||||||| |||| |||| ||||  |||||||| | | ||||| |||| ||||||||||||||| |||| |   |||||||||    
T  161708 tttaagttattttg-gtcacacataagtcctttaaatttgatatttgtaacagattggtcctttaggttattttggtcacacataagtcctttaagtttg 161610  T
Q  258 taaacgttttcaattta 274  Q
    |||| ||||||||||||    
T  161609 taaaagttttcaattta 161593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 249 - 386
Target Start/End: Original strand, 26879524 - 26879663
Alignment:
Q  249 ttaagtttgtaaacgttttcaatttattctttttaccacatcatc-ttttggttaatagaatcactaaatcaaaaacgtttataaacttaaa-gacttat 346  Q
    |||||||||||||||||||||||||| || || | |||||||||| |||||||||| | ||| |||||||  |||||||||| ||| ||||| ||| |||    
T  26879524 ttaagtttgtaaacgttttcaatttaatccttatgccacatcatcgttttggttaacataatgactaaattgaaaacgtttaaaaatttaaaggacatat 26879623  T
Q  347 ttgtgactaaaataatttaaaagatgaatctattacaaac 386  Q
     |||||  ||||||| ||||| ||| ||||| || |||||    
T  26879624 atgtgatcaaaataacttaaaggatcaatctgtttcaaac 26879663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 293
Target Start/End: Original strand, 2633209 - 2633313
Alignment:
Q  190 ttaagtttgcgatttgtaataaaatggtc-tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattctttttaccaca 288  Q
    ||||||||| ||||||||||| | || || |||||||||||||||| ||| ||||||   |||||||||||||| ||||| ||||| || || ||| |||    
T  2633209 ttaagtttgagatttgtaatagattgttcatttaagttattttggttacacataaatcatttaagtttgtaaacattttcgatttagtcattctactaca 2633308  T
Q  289 tcatc 293  Q
    |||||    
T  2633309 tcatc 2633313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 386
Target Start/End: Original strand, 18608629 - 18608841
Alignment:
Q  177 acacataggtccgttaagtttgcgatttgtaataaaatggt-ctttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttat 275  Q
    ||||||| |||| ||||||||| | ||||||| | | || | |||||||||||||||||||||  ||| |   ||||||||||||| ||||||||||||     
T  18608629 acacataagtcctttaagtttgaggtttgtaacagattgattctttaagttattttggtcacacttaagtcctttaagtttgtaaatgttttcaatttag 18608728  T
Q  276 tctttttacc-acatcatcttttggttaatagaatcactaaatcaaaaacgtttataaacttaaa-gacttatttgtgactaaaataatttaaaagatga 373  Q
    || || |||| | || |   |||||||||  |||  |||||||  |||||||||| ||||||||| ||||||| | |||  ||||||| |||||| || |    
T  18608729 tccttctaccaaaataagtctttggttaaccgaagaactaaattgaaaacgtttacaaacttaaaggacttatctatgatcaaaataacttaaaatatca 18608828  T
Q  374 atctattacaaac 386  Q
    |||| ||||||||    
T  18608829 atctgttacaaac 18608841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 305 - 368
Target Start/End: Complemental strand, 1173167 - 1173104
Alignment:
Q  305 agaatcactaaatcaaaaacgtttataaacttaaagacttatttgtgactaaaataatttaaaa 368  Q
    ||||| |||||||| |||| ||||| |||||||||||||||| |||||| ||||||| ||||||    
T  1173167 agaatgactaaatcgaaaatgtttacaaacttaaagacttatgtgtgaccaaaataacttaaaa 1173104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 32665783 - 32665854
Alignment:
Q  1 gactaaagtgataacgaaagtgcagagtcaatgatttcttcgtatttaatcatgggtcaaggacctttgtga 72  Q
    |||||||||||||||| |||||||||||||| || || || ||||||||||||| ||||  ||||| |||||    
T  32665783 gactaaagtgataacggaagtgcagagtcaaagacttatttgtatttaatcatgagtcagagacctatgtga 32665854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 3117757 - 3117687
Alignment:
Q  3 ctaaagtgataacgaaagtgcagagtcaatgatttcttcgtatttaatcatgggtcaaggacctttgtgat 73  Q
    |||||||||||||| ||||| |||||||  |||||||| |||||||||| || ||||  ||||||||||||    
T  3117757 ctaaagtgataacggaagtggagagtcagagatttctttgtatttaatcttgagtcagagacctttgtgat 3117687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 25037987 - 25037925
Alignment:
Q  2 actaaagtgataacgaaagtgcagagtcaatgatttcttcgtatttaatcatgggtcaaggac 64  Q
    ||||||||||||||| |||| |||||||| ||| ||||| ||||||||||||| |||| ||||    
T  25037987 actaaagtgataacgtaagtccagagtcagtgacttctttgtatttaatcatgagtcagggac 25037925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 25043199 - 25043137
Alignment:
Q  2 actaaagtgataacgaaagtgcagagtcaatgatttcttcgtatttaatcatgggtcaaggac 64  Q
    ||||||||||||||| |||| |||||||| ||| ||||| ||||||||||||| |||| ||||    
T  25043199 actaaagtgataacgtaagtccagagtcagtgacttctttgtatttaatcatgagtcagggac 25043137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 216 - 274
Target Start/End: Complemental strand, 41007519 - 41007461
Alignment:
Q  216 gtctttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
    |||||||| ||| |||||||||| |||| | | ||||||||||||||||||||||||||    
T  41007519 gtctttaaattaatttggtcacatataagtcttttaagtttgtaaacgttttcaattta 41007461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 238
Target Start/End: Original strand, 7489961 - 7490072
Alignment:
Q  126 ctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggt-ctttaag 224  Q
    ||||||||||| ||||||||||||||   ||| ||||||||| |||| ||||||||||  ||| ||||||||| | ||||||||| | || | ||||||     
T  7489961 ctttaagtttgaggtttgtaacagattaatca-tttaagtta-ttttggtcacacataaatcctttaagtttgaggtttgtaatagattgatcctttaaa 7490058  T
Q  225 ttattttggtcaca 238  Q
    ||||||||||||||    
T  7490059 ttattttggtcaca 7490072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 330 - 387
Target Start/End: Complemental strand, 18981062 - 18981005
Alignment:
Q  330 taaacttaaagacttatttgtgactaaaataatttaaaagatgaatctattacaaacc 387  Q
    ||||||||||||||||  |||||| ||||||||||||||| | ||||||||| |||||    
T  18981062 taaacttaaagacttaggtgtgaccaaaataatttaaaaggtcaatctattaaaaacc 18981005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 274
Target Start/End: Complemental strand, 26879752 - 26879589
Alignment:
Q  110 aattacaccagatgttctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaat 209  Q
    ||||| |||||| || ||||||||||| ||||||||||||||  |||| ||||||||||||||  ||||||||| |||  |||||||||   |||| ||     
T  26879752 aattataccagaggtcctttaagtttgaggtttgtaacagattggtca-tttaagttattttt-atcacacataagtcttttaagtttgaagtttgaaac 26879655  T
Q  210 aaaatggt-ctttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
    | | || | ||||||||||||||| ||||| |||  |   |||| ||| |||||||||||||||||    
T  26879654 agattgatcctttaagttattttgatcacatatatgtcctttaaatttttaaacgttttcaattta 26879589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 126 - 274
Target Start/End: Complemental strand, 40892634 - 40892488
Alignment:
Q  126 ctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtctttaagt 225  Q
    |||| |||||| ||||||||||| ||   |||||| ||||||||||  |||||||||| |||| |||| |||| | ||||||| | | ||| ||||||||    
T  40892634 ctttgagtttgaggtttgtaacatattgatcattt-aagttattttg-gtcacacataagtcctttaaatttgaggtttgtaacagattggactttaagt 40892537  T
Q  226 tattttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
    ||||| | ||||| |||| |   || ||||| |||||||||||||||||    
T  40892536 tatttcgatcacacataagtcatttgagtttttaaacgttttcaattta 40892488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 159 - 293
Target Start/End: Original strand, 52913173 - 52913308
Alignment:
Q  159 tttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaat-ggtc-tttaagttattttggtcacaaataaatttgttaagttt 256  Q
    |||||||||||||  |||||||||| |||| ||||||||| | |||||||  | || |||| ||||||||||| | |||||| |||| |   ||||||||    
T  52913173 tttaagttattttg-gtcacacataagtcctttaagtttgaggtttgtaaacagattggtcctttaagttattctagtcacacataagtcctttaagttt 52913271  T
Q  257 gtaaacgttttcaatttattctttttaccacatcatc 293  Q
    |||||||||||| ||||| || || | ||||||||||    
T  52913272 gtaaacgttttcgatttagtcattctgccacatcatc 52913308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 7944265 - 7944194
Alignment:
Q  1 gactaaagtgataacgaaagtgcagagtcaatgatttcttcgtatttaatcatgggtcaaggacctttgtga 72  Q
    ||||||| ||||||||||||||||||||||| || || || |||||||||  || |||| |||||| |||||    
T  7944265 gactaaattgataacgaaagtgcagagtcaaggacttatttgtatttaattttgagtcagggacctatgtga 7944194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 311 - 387
Target Start/End: Original strand, 33650586 - 33650664
Alignment:
Q  311 actaaatcaaaaacgtttataaacttaaa--gacttatttgtgactaaaataatttaaaagatgaatctattacaaacc 387  Q
    ||||||||||||||||||| |||||||||  ||||||| || ||| ||||||| ||||| ||  ||||| |||||||||    
T  33650586 actaaatcaaaaacgtttacaaacttaaaaggacttatgtgagaccaaaataacttaaaggaccaatctcttacaaacc 33650664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 219 - 293
Target Start/End: Original strand, 1173105 - 1173178
Alignment:
Q  219 tttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattctttttaccacatcatc 293  Q
    |||||||||||||||||||| |||| | | |||||||||||||| ||||| ||||| || || | ||||||||||    
T  1173105 tttaagttattttggtcacacataagtct-ttaagtttgtaaacattttcgatttagtcattctgccacatcatc 1173178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 5783122 - 5783171
Alignment:
Q  1 gactaaagtgataacgaaagtgcagagtcaatgatttcttcgtatttaat 50  Q
    |||||||||||||||| |||||||||||||  || ||||| |||||||||    
T  5783122 gactaaagtgataacggaagtgcagagtcatggacttctttgtatttaat 5783171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 387
Target Start/End: Complemental strand, 7489970 - 7489913
Alignment:
Q  331 aaacttaaag-acttatttgtgactaaaataatttaaaagatgaatctattacaaacc 387  Q
    |||||||||| |||||| |||||||||||||||||||| ||| ||||| | |||||||    
T  7489970 aaacttaaaggacttatgtgtgactaaaataatttaaatgatcaatctctcacaaacc 7489913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 9339756 - 9339691
Alignment:
Q  1 gactaaagtgataacgaaagtgcagagtcaatgatttcttcgtatttaatcatgggtcaaggacct 66  Q
    |||||||||||||||| ||||||||||||   ||||| || |||||||||| || |||| ||||||    
T  9339756 gactaaagtgataacggaagtgcagagtcggggatttatttgtatttaatcctgagtcagggacct 9339691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 22856790 - 22856721
Alignment:
Q  1 gactaaagtgataacgaaagtgcagagtcaatgatttcttcgtatttaatcatgggtcaaggacctttgt 70  Q
    |||||||||||||||| ||||||||||| |  || ||||| |||||||||| || |||||| | ||||||    
T  22856790 gactaaagtgataacggaagtgcagagttagagacttctttgtatttaatcctgagtcaagaatctttgt 22856721  T

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Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 221 - 289
Target Start/End: Original strand, 18981086 - 18981154
Alignment:
Q  221 taagttattttggtcacaaataaatttgttaagtttgtaaacgttttcaatttattctttttaccacat 289  Q
    |||||||||||||||||| |||| |   |||||||||||||| ||||| ||||  ||||| ||||||||    
T  18981086 taagttattttggtcacacataagtcctttaagtttgtaaacattttcgatttcgtctttctaccacat 18981154  T

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Target: scaffold0279 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 273
Target Start/End: Complemental strand, 1270 - 1124
Alignment:
Q  126 ctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtc-tttaag 224  Q
    |||||||||||  |||||||||||||  ||| ||| ||||||||||  |||||||||| |||  |||||||||  ||||||||   | ||||| |||| |    
T  1270 ctttaagtttgacgtttgtaacagattggtccttt-aagttattttg-gtcacacataagtcatttaagtttgatatttgtaactgattggtcctttagg 1173  T
Q  225 ttattttggtcacaaataaatttgttaagtttgtaaacgttttcaattt 273  Q
    |||||||||||||| |||| |   ||||||||||||| |||||||||||    
T  1172 ttattttggtcacacataagtcctttaagtttgtaaaagttttcaattt 1124  T

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Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 274
Target Start/End: Complemental strand, 12377 - 12236
Alignment:
Q  127 tttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtctttaagtt 226  Q
    |||||||||| ||||||||| ||||   | |||||||||||||||   ||||| ||| |||  ||||||||| | ||||||| | | |||||||||| ||    
T  12377 tttaagtttgaggtttgtaatagat---tgattttaagttattttga-tcacatataagtcaattaagtttgaggtttgtaacagattggtctttaactt 12282  T
Q  227 attttggtcacaaataaatttgttaagtttgtaaacgttttcaattta 274  Q
    |||||| |||||  ||||| | |||| |||||||| ||||||||||||    
T  12281 attttgatcaca--taaatcttttaaatttgtaaatgttttcaattta 12236  T

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Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 268
Target Start/End: Original strand, 12092 - 12191
Alignment:
Q  169 ttttcgtcacacataggtccgttaagtttgcgatttgtaataaaatggtctttaagttattttggtcacaaataaatttgttaagtttgtaaacgttttc 268  Q
    |||| ||||||||||   || ||||||||| ||||||||| ||| ||||| |||||||||||| |||||| | || |   |||||||||||||| |||||    
T  12092 ttttggtcacacatataccctttaagtttgagatttgtaacaaattggtccttaagttatttttgtcacacacaagtcctttaagtttgtaaacattttc 12191  T

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Target: scaffold0128 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 249 - 293
Target Start/End: Complemental strand, 2605 - 2561
Alignment:
Q  249 ttaagtttgtaaacgttttcaatttattctttttaccacatcatc 293  Q
    ||||||||||||||||||||||||||||| || ||||| ||||||    
T  2605 ttaagtttgtaaacgttttcaatttattcgttataccatatcatc 2561  T

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Target: scaffold0039 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 79183 - 79112
Alignment:
Q  1 gactaaagtgataacgaaagtgcagagtcaatgatttcttcgtatttaatcatgggtcaaggacctttgtga 72  Q
    ||||||||||||| || | ||||| |||||| || |||||  |||||||||||| ||||||||||| |||||    
T  79183 gactaaagtgatatcggaggtgcaaagtcaaggacttctttttatttaatcatgagtcaaggacctatgtga 79112  T

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Target: scaffold0578 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 208
Target Start/End: Complemental strand, 2520 - 2436
Alignment:
Q  123 gttctttaagtttgcggtttgtaacagatatgtcattttaagttatttttcgtcacacataggtccgttaagtttgcgatttgtaa 208  Q
    |||||||||||||| ||||||||| ||||  ||| |||||||||| ||||  ||||||||| |||  ||||||||| | |||||||    
T  2520 gttctttaagtttgaggtttgtaatagattggtccttttaagtta-ttttgttcacacataagtcatttaagtttgtggtttgtaa 2436  T

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