View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19390_low_12 (Length: 251)
Name: NF19390_low_12
Description: NF19390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19390_low_12 |
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| [»] chr4 (4 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 49106853 - 49106621
Alignment:
| Q |
19 |
tggaggcattgtttcaatgttgtattcaacaatctctcatcacatttaatatttataatgaaagtttgcagcagaaaataagtgttgagtcacgcacggg |
118 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49106853 |
tggaggaattgtttcaatgttgtattcaacaatctctcatcacatttaatatttataatgaaagtttgcagcagaaaataagtgttgagtcacgcacggg |
49106754 |
T |
|
| Q |
119 |
agtggtgtgtaagagccagtcacaaggtggtactgcatataagtcccacatcgggtaatgaagaaaggaactgattagacagttgatataaaagcagaag |
218 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49106753 |
agtggtgtgtaagagtcagtcacaaggtggtactgcatataagtcccacatcgggtaatgaagaaaggaactgattagacagttgatataaaagcagaag |
49106654 |
T |
|
| Q |
219 |
ccagccaccctttcaactcatacctttctcggc |
251 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
49106653 |
ccagccaccctttcaactcatacctttctcggc |
49106621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 128 - 251
Target Start/End: Complemental strand, 49108848 - 49108725
Alignment:
| Q |
128 |
taagagccagtcacaaggtggtactgcatataagtcccacatcgggtaatgaagaaaggaactgattagacagttgatataaaagcagaagccagccacc |
227 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
49108848 |
taagagtcagtcacaaggtggtactgcatataagtcccacatcgggtaataaggaaaggaactgaatagacagttgatataaaatcagaagccagcctat |
49108749 |
T |
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| Q |
228 |
ctttcaactcatacctttctcggc |
251 |
Q |
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||||||||||||||||||||||| |
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| T |
49108748 |
atttcaactcatacctttctcggc |
49108725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 121 - 251
Target Start/End: Complemental strand, 49533846 - 49533716
Alignment:
| Q |
121 |
tggtgtgtaagagccagtcacaaggtggtactgcatataagtcccacatcgggtaatgaagaaaggaactgattagacagttgatataaaagcagaagcc |
220 |
Q |
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||||||||||||| ||||||||| |||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
49533846 |
tggtgtgtaagagtcagtcacaaaatggtactgcataaaagtcccacatcggctaatgaagaaagaaactgattagacagttgatataaaaccagaagcc |
49533747 |
T |
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| Q |
221 |
agccaccctttcaactcatacctttctcggc |
251 |
Q |
| |
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|||| || |||| ||||||||||||||| |
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| T |
49533746 |
agcccttattccaacccatacctttctcggc |
49533716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 144 - 251
Target Start/End: Complemental strand, 50077397 - 50077291
Alignment:
| Q |
144 |
ggtggtactgcatataagtcccacatcgggtaatgaagaaaggaactgattagacagttgatataaaagcagaagccagccaccctttcaactcatacct |
243 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| |||| | | |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
50077397 |
ggtggtactgcatataagtcccatatcgggtaatgaagaaagaaactaagt-gacagttgatataaaagcagaagccagctcttctttcaactcatacct |
50077299 |
T |
|
| Q |
244 |
ttctcggc |
251 |
Q |
| |
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|||||||| |
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| T |
50077298 |
ttctcggc |
50077291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 9e-48; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 19 - 158
Target Start/End: Complemental strand, 10796250 - 10796110
Alignment:
| Q |
19 |
tggaggcattgtttcaat-gttgtattcaacaatctctcatcacatttaatatttataatgaaagtttgcagcagaaaataagtgttgagtcacgcacgg |
117 |
Q |
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|||| ||||||||||||| |||||||||||||||||||| |||||||||| | | ||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
10796250 |
tggatgcattgtttcaattgttgtattcaacaatctctcgtcacatttaaaactgataatgaaaatttgcagcagaaaataagtggtgagtcacgcacgg |
10796151 |
T |
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| Q |
118 |
gagtggtgtgtaagagccagtcacaaggtggtactgcatat |
158 |
Q |
| |
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|||||||||||||||| ||||||||||||| |||||||||| |
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| T |
10796150 |
gagtggtgtgtaagagtcagtcacaaggtgctactgcatat |
10796110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 144 - 251
Target Start/End: Complemental strand, 10796088 - 10795982
Alignment:
| Q |
144 |
ggtggtactgcatataagtcccacatcgggtaatgaagaaaggaactgattagacagttgatataaaagcagaagccagccaccctttcaactcatacct |
243 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
10796088 |
ggtggtactgcatataagtcccacatcgggtaatgaagaaagaaactgagt-gacagttgatataaaagcagaagccagctcttctttcaactcatacct |
10795990 |
T |
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| Q |
244 |
ttctcggc |
251 |
Q |
| |
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|||||||| |
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| T |
10795989 |
ttctcggc |
10795982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 144 - 251
Target Start/End: Complemental strand, 10791850 - 10791744
Alignment:
| Q |
144 |
ggtggtactgcatataagtcccacatcgggtaatgaagaaaggaactgattagacagttgatataaaagcagaagccagccaccctttcaactcatacct |
243 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| |||| | | |||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
10791850 |
ggtggtactgcatataagtcccatatcgggtaatgaagaaagaaactaagt-gacagttgatataaaagcagaagccaactcttctttcaactcatacct |
10791752 |
T |
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| Q |
244 |
ttctcggc |
251 |
Q |
| |
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|||||||| |
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| T |
10791751 |
ttctcggc |
10791744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 127 - 251
Target Start/End: Complemental strand, 38175746 - 38175622
Alignment:
| Q |
127 |
gtaagagccagtcacaaggtggtactgcatataagtcccacatcgggtaatgaagaaaggaactgattagacagttgatataaaagcagaagccagccac |
226 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||| | || |||||| ||||||||||||| || || | |
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|
| T |
38175746 |
gtaagagtcggtcacaaggtggtactgcatataagtcccacatcgggtaatgaagaaagaaactaagtatacagttcatataaaagcagatgcgaggctt |
38175647 |
T |
|
| Q |
227 |
cctttcaactcatacctttctcggc |
251 |
Q |
| |
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| ||||||||||||||||||||||| |
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| T |
38175646 |
catttcaactcatacctttctcggc |
38175622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 7524875 - 7524947
Alignment:
| Q |
142 |
aaggtggtactgcatataagtcccacatcgggtaatgaagaaaggaactgattagacagttgatataaaagca |
214 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||||| ||||||| |||||||| |||||||||||| |
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| T |
7524875 |
aaggtggtgctgcataaaagtcccacatcgggtaatgaagaaaagaactgagtagacagtggatataaaagca |
7524947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 251
Target Start/End: Original strand, 40054212 - 40054327
Alignment:
| Q |
136 |
agtcacaaggtggtactgcatataagtcccacatcgggtaatgaagaaaggaactgattagacagttgatataaaagcagaagccagccaccctttcaac |
235 |
Q |
| |
|
|||| |||||| ||||||||| ||||||||||||| ||||||||||||||||||| |||||| | |||||||||| ||| || || | | ||| || |
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| T |
40054212 |
agtcccaaggtactactgcataaaagtcccacatcgaataatgaagaaaggaactgagtagacactggatataaaagaagatgcgaggcctcattttaat |
40054311 |
T |
|
| Q |
236 |
tcatacctttctcggc |
251 |
Q |
| |
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|||||||||||||||| |
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| T |
40054312 |
tcatacctttctcggc |
40054327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 41841292 - 41841244
Alignment:
| Q |
203 |
gatataaaagcagaagccagccaccctttcaactcatacctttctcggc |
251 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
41841292 |
gatataaaagcagaagccaacccatctttcaactcatacctttctcggc |
41841244 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 216
Target Start/End: Original strand, 43849952 - 43850029
Alignment:
| Q |
136 |
agtcacaaggtggtactgcatataagtcccacatcgggtaatgaagaaaggaactgattagacagttgatataaaagcaga |
216 |
Q |
| |
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|||| ||||||| ||||||||| ||||||||||||||||| ||||||||| |||| ||||||| |||||||||||||| |
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| T |
43849952 |
agtcccaaggtgctactgcata---gtcccacatcgggtaatcaagaaaggatctgagtagacagaggatataaaagcaga |
43850029 |
T |
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