View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19390_low_3 (Length: 579)

Name: NF19390_low_3
Description: NF19390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19390_low_3
NF19390_low_3
[»] chr3 (13 HSPs)
chr3 (23-169)||(9666891-9667037)
chr3 (34-170)||(29196866-29197002)
chr3 (20-169)||(28073999-28074148)
chr3 (22-169)||(44700914-44701062)
chr3 (19-168)||(31314120-31314264)
chr3 (34-129)||(25796288-25796383)
chr3 (26-118)||(3715495-3715587)
chr3 (34-118)||(47650078-47650162)
chr3 (139-170)||(5372821-5372852)
chr3 (469-544)||(31520607-31520682)
chr3 (481-544)||(36720380-36720443)
chr3 (469-543)||(17108900-17108974)
chr3 (469-545)||(46518626-46518702)
[»] chr4 (10 HSPs)
chr4 (20-169)||(45687616-45687765)
chr4 (34-170)||(36463836-36463972)
chr4 (48-170)||(52467782-52467904)
chr4 (23-170)||(46147779-46147910)
chr4 (37-129)||(3793593-3793686)
chr4 (479-543)||(33619206-33619270)
chr4 (34-129)||(24334561-24334656)
chr4 (439-469)||(23491991-23492021)
chr4 (439-469)||(40283948-40283978)
chr4 (473-546)||(51250528-51250601)
[»] chr8 (11 HSPs)
chr8 (20-169)||(5688849-5688998)
chr8 (23-167)||(18141421-18141565)
chr8 (20-167)||(40320686-40320833)
chr8 (24-170)||(8149937-8150082)
chr8 (23-129)||(9765388-9765493)
chr8 (34-117)||(6127733-6127817)
chr8 (34-129)||(26402720-26402816)
chr8 (110-169)||(30291216-30291275)
chr8 (477-542)||(29858059-29858124)
chr8 (439-471)||(968444-968476)
chr8 (477-545)||(28783058-28783126)
[»] chr2 (12 HSPs)
chr2 (20-170)||(36773146-36773297)
chr2 (23-170)||(33162852-33162999)
chr2 (19-103)||(11066957-11067041)
chr2 (34-129)||(34681825-34681920)
chr2 (26-129)||(42269872-42269976)
chr2 (37-129)||(31056557-31056650)
chr2 (469-543)||(26545840-26545914)
chr2 (131-169)||(11066907-11066945)
chr2 (439-471)||(25637233-25637265)
chr2 (469-543)||(19016031-19016105)
chr2 (473-542)||(37755977-37756046)
chr2 (477-545)||(39714990-39715058)
[»] chr1 (15 HSPs)
chr1 (20-170)||(28266008-28266158)
chr1 (20-169)||(776847-776994)
chr1 (41-169)||(50167608-50167737)
chr1 (41-169)||(50169630-50169759)
chr1 (39-170)||(47256004-47256134)
chr1 (94-169)||(8871591-8871666)
chr1 (19-111)||(40816348-40816439)
chr1 (95-169)||(45644824-45644898)
chr1 (34-121)||(47703437-47703524)
chr1 (439-543)||(1094525-1094639)
chr1 (469-544)||(25297771-25297846)
chr1 (473-544)||(40257398-40257469)
chr1 (469-510)||(17439950-17439991)
chr1 (439-472)||(21547442-21547475)
chr1 (134-170)||(43342772-43342808)
[»] chr7 (8 HSPs)
chr7 (48-170)||(12098247-12098369)
chr7 (26-167)||(24526344-24526486)
chr7 (41-169)||(8152947-8153080)
chr7 (20-169)||(41317867-41318034)
chr7 (39-153)||(22269351-22269464)
chr7 (34-118)||(29160270-29160353)
chr7 (477-543)||(48771938-48772004)
chr7 (473-545)||(2446306-2446378)
[»] chr6 (10 HSPs)
chr6 (19-169)||(3039354-3039505)
chr6 (330-570)||(13441023-13441271)
chr6 (37-129)||(21800913-21801005)
chr6 (470-544)||(31622994-31623068)
chr6 (477-544)||(33549103-33549170)
chr6 (137-170)||(4045012-4045045)
chr6 (469-524)||(6776609-6776664)
chr6 (439-469)||(24641152-24641182)
chr6 (477-543)||(30127400-30127466)
chr6 (475-524)||(6758430-6758479)
[»] chr5 (7 HSPs)
chr5 (23-129)||(10282208-10282315)
chr5 (39-170)||(28277694-28277824)
chr5 (34-129)||(3881241-3881337)
chr5 (439-543)||(16773807-16773921)
chr5 (473-544)||(30883204-30883275)
chr5 (469-543)||(8278277-8278351)
chr5 (477-543)||(14495815-14495881)
[»] scaffold0258 (1 HSPs)
scaffold0258 (439-543)||(15285-15399)
[»] scaffold0477 (1 HSPs)
scaffold0477 (34-129)||(5447-5544)
[»] scaffold0172 (1 HSPs)
scaffold0172 (469-545)||(32771-32847)
[»] scaffold0299 (1 HSPs)
scaffold0299 (477-524)||(11547-11594)
[»] scaffold0291 (1 HSPs)
scaffold0291 (477-543)||(2480-2546)


Alignment Details
Target: chr3 (Bit Score: 115; Significance: 4e-58; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 23 - 169
Target Start/End: Original strand, 9666891 - 9667037
Alignment:
Q  23 ctgcatcatgacacgttcctcctggatcgtgccacgatttttctagtggcaacccaaaaactgaaccattcaatcgtgccatgttgccctgcaaatgtgt 122  Q
    ||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||     
T  9666891 ctgcatcgtgccacgttcctcctggatcgtgccacgatttttccagtggcaacccaaaaactgaacccttcaatcgtgccacgttgccctgcaaacgtgc 9666990  T
Q  123 cacgattgttccaaacttcaacatcaattttgagacacatttcaaca 169  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  9666991 cacgattgttccaaacttcaacattaattttgagacacatttcaaca 9667037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 34 - 170
Target Start/End: Original strand, 29196866 - 29197002
Alignment:
Q  34 cacgttcctcctggatcgtgccacgatttttctagtggcaacccaaaaactgaaccattcaatcgtgccatgttgccctgcaaatgtgtcacgattgttc 133  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||| ||| ||||||| | |    
T  29196866 cacgttcctcctggatcgtgccacgatttttccagtggcaacccaaaaattgaaccattcaatcgtgccacgttgccctgcaaacgtgccacgattttcc 29196965  T
Q  134 caaacttcaacatcaattttgagacacatttcaacaa 170  Q
    |||||||||||||||||||||||||||||||||||||    
T  29196966 caaacttcaacatcaattttgagacacatttcaacaa 29197002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 20 - 169
Target Start/End: Complemental strand, 28074148 - 28073999
Alignment:
Q  20 ctcctgcatcatgacacgttcctcctggatcgtgccacgatttttctagtggcaacccaaaaactgaaccattcaatcgtgccatgttgccctgcaaatg 119  Q
    |||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |    
T  28074148 ctcctgcatcgtgccacgttcctcctggatcgtgccacgatttttccagtggcaacccaaaaactgaaccattcaatcgtgccacgttgccctgcaaacg 28074049  T
Q  120 tgtcacgattgttccaaacttcaacatcaattttgagacacatttcaaca 169  Q
    || ||| ||| ||| |||||||||||||||||||||| ||  ||||||||    
T  28074048 tgccacaatttttctaaacttcaacatcaattttgagtcaattttcaaca 28073999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 22 - 169
Target Start/End: Original strand, 44700914 - 44701062
Alignment:
Q  22 cctgcatcatgacacgttcctcctggatcgtgccacgatttttctagtggcaacccaaaaactgaaccattcaatcgtgccatgttgccctgcaaatgtg 121  Q
    |||||||| ||  ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  44700914 cctgcatcgtgctacgttcctcctggatcgtgccacgatttttccagtggtaacccaaaaactgaaccattcaatcgtgccacgttgccctgcaaacgtg 44701013  T
Q  122 tcac-gattgttccaaacttcaacatcaattttgagacacatttcaaca 169  Q
     ||| | || ||||| ||||||| |||||||||||||||||||||||||    
T  44701014 ccacggttttttccagacttcaaaatcaattttgagacacatttcaaca 44701062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 19 - 168
Target Start/End: Complemental strand, 31314264 - 31314120
Alignment:
Q  19 cctcctgcatcatgacacgttcctcctggatcgtgccacgatttttctagtggcaacccaaaaactgaaccattcaatcgtgccatgttgccctgcaaat 118  Q
    ||||||||||| || |||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||     |||||| |   || |||||||||     
T  31314264 cctcctgcatcgtgccacgttcctcttggatcgtgccacgatttttccagtggcgacccaaaaactgaacc-----atcgtgtcgcattaccctgcaaac 31314170  T
Q  119 gtgtcacgattgttccaaacttcaacatcaattttgagacacatttcaac 168  Q
    ||| ||||||| || |||||||||||||||||||||||||||||||||||    
T  31314169 gtgccacgattttttcaaacttcaacatcaattttgagacacatttcaac 31314120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 34 - 129
Target Start/End: Original strand, 25796288 - 25796383
Alignment:
Q  34 cacgttcctcctggatcgtgccacgatttttctagtggcaacccaaaaactgaaccattcaatcgtgccatgttgccctgcaaatgtgtcacgatt 129  Q
    |||||||||||||||||||| ||||||||||| |||| ||| |||||| ||||| ||| ||||||||||| ||||||||||||| ||| |||||||    
T  25796288 cacgttcctcctggatcgtgtcacgatttttccagtgacaaaccaaaacctgaatcatccaatcgtgccacgttgccctgcaaacgtgccacgatt 25796383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 3715587 - 3715495
Alignment:
Q  26 catcatgacacgttcctcctggatcgtgccacgatttttctagtggcaacccaaaaactgaaccattcaatcgtgccatgttgccctgcaaat 118  Q
    ||||||| |||||||||||||||||||||||| ||||||| || | ||| |  ||| ||||||||  ||||||||||| ||||||||||||||    
T  3715587 catcatgtcacgttcctcctggatcgtgccacaatttttccagcgacaaacacaaatctgaaccaaccaatcgtgccacgttgccctgcaaat 3715495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 118
Target Start/End: Original strand, 47650078 - 47650162
Alignment:
Q  34 cacgttcctcctggatcgtgccacgatttttctagtggcaacccaaaaactgaaccattcaatcgtgccatgttgccctgcaaat 118  Q
    |||||||||||||||||||||||  ||||||| |  | ||| || ||| ||||||||  ||||||||||| ||||||||||||||    
T  47650078 cacgttcctcctggatcgtgccataatttttccaacgacaaacccaaatctgaaccaaccaatcgtgccacgttgccctgcaaat 47650162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 170
Target Start/End: Complemental strand, 5372852 - 5372821
Alignment:
Q  139 ttcaacatcaattttgagacacatttcaacaa 170  Q
    ||||||||||||||||||||||||||||||||    
T  5372852 ttcaacatcaattttgagacacatttcaacaa 5372821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 544
Target Start/End: Original strand, 31520607 - 31520682
Alignment:
Q  469 atcaaacttgagacctcgtggaggagcacgctcccagatcctcagccaataccaccgaaccaatccaagtgggttt 544  Q
    ||||||| | |||||||| |||||||||| |||||||||||  ||||||| |||||   |||| ||||||||||||    
T  31520607 atcaaacctaagacctcgaggaggagcacactcccagatcccaagccaatgccaccaggccaacccaagtgggttt 31520682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 544
Target Start/End: Complemental strand, 36720443 - 36720380
Alignment:
Q  481 acctcgtggaggagcacgctcccagatcctcagccaataccaccgaaccaatccaagtgggttt 544  Q
    |||||| |||||||||| |||||| ||||  |||||||||||||  ||||| ||||||||||||    
T  36720443 acctcgaggaggagcacactcccatatcccaagccaataccaccagaccaacccaagtgggttt 36720380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 469 - 543
Target Start/End: Original strand, 17108900 - 17108974
Alignment:
Q  469 atcaaacttgagacctcgtggaggagcacgctcccagatcctcagccaataccaccgaaccaatccaagtgggtt 543  Q
    ||||||| |||||||| | |||||||||| |||||| |||  ||| |||||||||| ||| || |||||||||||    
T  17108900 atcaaacctgagaccttgaggaggagcacactcccacatctccagtcaataccaccaaactaacccaagtgggtt 17108974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 469 - 545
Target Start/End: Complemental strand, 46518702 - 46518626
Alignment:
Q  469 atcaaacttgagacctcgtggaggagcacgctcccagatcctcagccaataccaccgaaccaatccaagtgggtttc 545  Q
    ||||||| ||| |||| | |||||||||| |||||||||||  ||||||||||||    |||| |||||||||||||    
T  46518702 atcaaacctgaaaccttgaggaggagcacactcccagatcccaagccaataccactatgccaacccaagtgggtttc 46518626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 2e-57; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 20 - 169
Target Start/End: Original strand, 45687616 - 45687765
Alignment:
Q  20 ctcctgcatcatgacacgttcctcctggatcgtgccacgatttttctagtggcaacccaaaaactgaaccattcaatcgtgccatgttgccctgcaaatg 119  Q
    |||||||||| || |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||| |    
T  45687616 ctcctgcatcgtgtcacgttcctcctggatcgtgccacgacttttccagtggcaacccaaaaactgaaccattcaatcgtaccacgttgccctgcaaacg 45687715  T
Q  120 tgtcacgattgttccaaacttcaacatcaattttgagacacatttcaaca 169  Q
    || ||||||| |||||||||||||||||||||||||||||||||||||||    
T  45687716 tgccacgatttttccaaacttcaacatcaattttgagacacatttcaaca 45687765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 34 - 170
Target Start/End: Original strand, 36463836 - 36463972
Alignment:
Q  34 cacgttcctcctggatcgtgccacgatttttctagtggcaacccaaaaactgaaccattcaatcgtgccatgttgccctgcaaatgtgtcacgattgttc 133  Q
    ||||||||||||| |||||||||||||||||  | |||||||||||||||||||||||||||||||| || ||||||||||||| ||| |||||||||||    
T  36463836 cacgttcctcctgcatcgtgccacgattttttcaatggcaacccaaaaactgaaccattcaatcgtgtcacgttgccctgcaaacgtgccacgattgttc 36463935  T
Q  134 caaacttcaacatcaattttgagacacatttcaacaa 170  Q
    |||||||||| ||||||||||||||||||||||||||    
T  36463936 caaacttcaatatcaattttgagacacatttcaacaa 36463972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 48 - 170
Target Start/End: Original strand, 52467782 - 52467904
Alignment:
Q  48 atcgtgccacgatttttctagtggcaacccaaaaactgaaccattcaatcgtgccatgttgccctgcaaatgtgtcacgattgttccaaacttcaacatc 147  Q
    |||||||| ||||||||  | ||||||||||||| ||||||||||||||||||||| ||||||||||||| ||| ||||||||||  | |||||||||||    
T  52467782 atcgtgcctcgattttttcaatggcaacccaaaacctgaaccattcaatcgtgccacgttgccctgcaaacgtgccacgattgttttagacttcaacatc 52467881  T
Q  148 aattttgagacacatttcaacaa 170  Q
    |||||||||||||||||||||||    
T  52467882 aattttgagacacatttcaacaa 52467904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 23 - 170
Target Start/End: Original strand, 46147779 - 46147910
Alignment:
Q  23 ctgcatcatgacacgttcctcctggatcgtgccacgatttttctagtggcaacccaaaaactgaaccattcaatcgtgccatgttgccctgcaaatgtgt 122  Q
    ||||||| || |||||||||||||||||||||||||||||||| |||| ||| || ||| ||||||||||||||||                ||| |||     
T  46147779 ctgcatcgtgccacgttcctcctggatcgtgccacgatttttccagtgacaaacccaaacctgaaccattcaatcg----------------aaacgtgc 46147862  T
Q  123 cacgattgttccaaacttcaacatcaattttgagacacatttcaacaa 170  Q
    || |||| ||||||||||||||||||||||||||||||||||||||||    
T  46147863 catgatttttccaaacttcaacatcaattttgagacacatttcaacaa 46147910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 37 - 129
Target Start/End: Complemental strand, 3793686 - 3793593
Alignment:
Q  37 gttcctcctggatcgtgccacgatttttctagtg-gcaacccaaaaactgaaccattcaatcgtgccatgttgccctgcaaatgtgtcacgatt 129  Q
    ||||||||||||||||||||||||||||| || |   ||||||| | ||||||||| ||||||| ||||||| ||||||||| ||| |||||||    
T  3793686 gttcctcctggatcgtgccacgatttttccagcgaaaaacccaatatctgaaccatccaatcgtaccatgtttccctgcaaacgtgccacgatt 3793593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 479 - 543
Target Start/End: Complemental strand, 33619270 - 33619206
Alignment:
Q  479 agacctcgtggaggagcacgctcccagatcctcagccaataccaccgaaccaatccaagtgggtt 543  Q
    |||||||  |||||| |||||||||||||||| ||||||||||||| |  ||| |||||||||||    
T  33619270 agacctcaaggaggaccacgctcccagatcctaagccaataccaccaaggcaacccaagtgggtt 33619206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 129
Target Start/End: Original strand, 24334561 - 24334656
Alignment:
Q  34 cacgttcctcctggatcgtgccacgatttttctagtggcaacccaaaaactgaaccattcaatcgtgccatgttgccctgcaaatgtgtcacgatt 129  Q
    ||||||||| |||||||||||||| | ||||| |  | |||  | ||| ||||||||| |||||||| || ||||||||||||| ||| |||||||    
T  24334561 cacgttccttctggatcgtgccacaaattttccaacgacaaatccaaatctgaaccatccaatcgtgacacgttgccctgcaaacgtgccacgatt 24334656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 439 - 469
Target Start/End: Original strand, 23491991 - 23492021
Alignment:
Q  439 aagaagttaaattagcccacctaaattggca 469  Q
    |||||||||||||||||||||||||||||||    
T  23491991 aagaagttaaattagcccacctaaattggca 23492021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 439 - 469
Target Start/End: Original strand, 40283948 - 40283978
Alignment:
Q  439 aagaagttaaattagcccacctaaattggca 469  Q
    |||||||||||||||||||||||||||||||    
T  40283948 aagaagttaaattagcccacctaaattggca 40283978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 546
Target Start/End: Original strand, 51250528 - 51250601
Alignment:
Q  473 aacttgagacctcgtggaggagcacgctcccagatcctcagccaataccaccgaaccaatccaagtgggtttca 546  Q
    ||||||||| || | || ||||||| |||||||||||  |||||||||||||   |||| ||||||||||||||    
T  51250528 aacttgagatcttgaggcggagcacactcccagatcccaagccaataccaccaggccaacccaagtgggtttca 51250601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 4e-55; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 20 - 169
Target Start/End: Complemental strand, 5688998 - 5688849
Alignment:
Q  20 ctcctgcatcatgacacgttcctcctggatcgtgccacgatttttctagtggcaacccaaaaactgaaccattcaatcgtgccatgttgccctgcaaatg 119  Q
    |||||||||| || |||||||||||||||||||||||||||||||  |||| ||||| |||||||||||||||||||||||||| ||||||||||||| |    
T  5688998 ctcctgcatcgtgccacgttcctcctggatcgtgccacgattttttcagtgacaaccaaaaaactgaaccattcaatcgtgccacgttgccctgcaaacg 5688899  T
Q  120 tgtcacgattgttccaaacttcaacatcaattttgagacacatttcaaca 169  Q
    || ||||||| |||||||||||||||||||||||||||||||||||||||    
T  5688898 tgccacgatttttccaaacttcaacatcaattttgagacacatttcaaca 5688849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 23 - 167
Target Start/End: Complemental strand, 18141565 - 18141421
Alignment:
Q  23 ctgcatcatgacacgttcctcctggatcgtgccacgatttttctagtggcaacccaaaaactgaaccattcaatcgtgccatgttgccctgcaaatgtgt 122  Q
    ||||||| || |||||||||||||||||||||||  ||||||| ||||||||||||||||||||||| ||||||||||| | ||||||||||||| |||     
T  18141565 ctgcatcgtgccacgttcctcctggatcgtgccataatttttccagtggcaacccaaaaactgaaccgttcaatcgtgcgacgttgccctgcaaacgtgc 18141466  T
Q  123 cacgattgttccaaacttcaacatcaattttgagacacatttcaa 167  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  18141465 cacgattgttccagacttcaacatcaattttgagacacatttcaa 18141421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 20 - 167
Target Start/End: Complemental strand, 40320833 - 40320686
Alignment:
Q  20 ctcctgcatcatgacacgttcctcctggatcgtgccacgatttttctagtggcaacccaaaaactgaaccattcaatcgtgccatgttgccctgcaaatg 119  Q
    |||||||||| || ||||||||||||  || ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||      
T  40320833 ctcctgcatcgtgccacgttcctcctacattgtgccacgatttttccagtggcaacccaaaaactgaaccattcaatcgtgccacgttgccctgcaaaca 40320734  T
Q  120 tgtcacgattgttccaaacttcaacatcaattttgagacacatttcaa 167  Q
    || ||||||| |||||||||||||| |||||||| |||||||||||||    
T  40320733 tgccacgatttttccaaacttcaacttcaattttaagacacatttcaa 40320686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 24 - 170
Target Start/End: Original strand, 8149937 - 8150082
Alignment:
Q  24 tgcatcatgacacgttcctcctggatcgtgccacgatttttctagtggcaacccaaaaactgaaccattcaatcgtgccatgttgccctgcaaatgtgtc 123  Q
    |||||| || ||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||| |    
T  8149937 tgcatcgtgtcacattcctcctagatcgtgccacgaattttctagtggcaacccaaaaactgaaccattcaatcgtgccacattgccctgcaaacgtgcc 8150036  T
Q  124 acgattgttccaaacttcaacatcaattttgagacacatttcaacaa 170  Q
    |||||| ||||| |||||| ||||||||||||| ||  |||||||||    
T  8150037 acgatt-ttccagacttcaccatcaattttgagtcaattttcaacaa 8150082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 129
Target Start/End: Complemental strand, 9765493 - 9765388
Alignment:
Q  23 ctgcatcatgacacgttcctcctggatcgtgccacgatttttctagtggcaacccaaaaactgaaccattcaatcgtgccatgttgccctgcaaatgtgt 122  Q
    ||||||| || ||||||||||||||||||||||| ||||||||  ||| ||| || |||  |||||||| ||||||||||| ||||||||||||| |||     
T  9765493 ctgcatcgtgccacgttcctcctggatcgtgccatgatttttc-cgtgacaaacccaaatatgaaccatccaatcgtgccacgttgccctgcaaacgtgc 9765395  T
Q  123 cacgatt 129  Q
    |||||||    
T  9765394 cacgatt 9765388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 34 - 117
Target Start/End: Original strand, 6127733 - 6127817
Alignment:
Q  34 cacgttcctcctggatcgtgccacgatttttctagtggcaa-cccaaaaactgaaccattcaatcgtgccatgttgccctgcaaa 117  Q
    |||||||||  ||||||||||||| |||||||||| | ||| ||||||| ||||||||| |||||||||||  ||||||||||||    
T  6127733 cacgttcctattggatcgtgccacaatttttctagcgacaaacccaaaatctgaaccatccaatcgtgccacattgccctgcaaa 6127817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 34 - 129
Target Start/End: Complemental strand, 26402816 - 26402720
Alignment:
Q  34 cacgttcctcctggatcgtgccacgatttttctag-tggcaacccaaaaactgaaccattcaatcgtgccatgttgccctgcaaatgtgtcacgatt 129  Q
    ||||||| ||||| |||||||||||| ||||| || |   ||||||||| ||||||||| ||||||||||| ||||||||||||| ||| |||||||    
T  26402816 cacgttcatcctgaatcgtgccacgaattttccagctataaacccaaaatctgaaccatccaatcgtgccacgttgccctgcaaacgtgccacgatt 26402720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 110 - 169
Target Start/End: Complemental strand, 30291275 - 30291216
Alignment:
Q  110 cctgcaaatgtgtcacgattgttccaaacttcaacatcaattttgagacacatttcaaca 169  Q
    |||||||| |||  |||||| ||||| |||||||||||||||||||||||||||||||||    
T  30291275 cctgcaaacgtgcgacgatttttccagacttcaacatcaattttgagacacatttcaaca 30291216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 477 - 542
Target Start/End: Original strand, 29858059 - 29858124
Alignment:
Q  477 tgagacctcgtggaggagcacgctcccagatcctcagccaataccaccgaaccaatccaagtgggt 542  Q
    |||||||||| |||||||||| ||||| | |||  |||||||||||||   |||||||||||||||    
T  29858059 tgagacctcgaggaggagcacactccctggtcccaagccaataccaccaggccaatccaagtgggt 29858124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 439 - 471
Target Start/End: Complemental strand, 968476 - 968444
Alignment:
Q  439 aagaagttaaattagcccacctaaattggcatc 471  Q
    |||||| ||||||||||||||||||||||||||    
T  968476 aagaagctaaattagcccacctaaattggcatc 968444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 477 - 545
Target Start/End: Complemental strand, 28783126 - 28783058
Alignment:
Q  477 tgagacctcgtggaggagcacgctcccagatcctcagccaataccaccgaaccaatccaagtgggtttc 545  Q
    |||||||| | |||||||||| ||||||| ||   ||||||||||||| | |||| |||||||||||||    
T  28783126 tgagaccttgaggaggagcacactcccaggtctcaagccaataccaccaagccaacccaagtgggtttc 28783058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 20 - 170
Target Start/End: Complemental strand, 36773297 - 36773146
Alignment:
Q  20 ctcctgcatcatgacacgttcctcctggatcgtgccacgatttttctagtggcaacccaaaaactgaaccattcaatcgtgccatgttgccctgcaaatg 119  Q
    |||||||||| || |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||      
T  36773297 ctcctgcatcgtgtcacgttcctcctggatcgtgccacaatttttccagtggcaacccaaaaactgaaccattcaatcgtgccacgttgccctgcaaaca 36773198  T
Q  120 tgtcacgattgttccaaacttc-aacatcaattttgagacacatttcaacaa 170  Q
    || ||||||| || |||||||| |||||||||||||||||||||||||||||    
T  36773197 tgccacgattttttcaaacttcaaacatcaattttgagacacatttcaacaa 36773146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 23 - 170
Target Start/End: Original strand, 33162852 - 33162999
Alignment:
Q  23 ctgcatcatgacacgttcctcctggatcgtgccacgatttttctagtggcaacccaaaaactgaaccattcaatcgtgccatgttgccctgcaaatgtgt 122  Q
    ||||||| || || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||| ||||  ||     
T  33162852 ctgcatcgtgccatgttcctcctggatcgtgccacgatttttccagtggcaacccaaaaactgaaccattcaatcgtgccacgtttccctacaaacatgc 33162951  T
Q  123 cacgattgttccaaacttcaacatcaattttgagacacatttcaacaa 170  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||    
T  33162952 cacgatttttccaaacttcatcatcaattttgagacacatttcaacaa 33162999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 11067041 - 11066957
Alignment:
Q  19 cctcctgcatcatgacacgttcctcctggatcgtgccacgatttttctagtggcaacccaaaaactgaaccattcaatcgtgcca 103  Q
    ||||||||||| |  |||||||||||| ||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||    
T  11067041 cctcctgcatcgtatcacgttcctcctagatcgtgccacgattttttcagtggcaacccaaaaactgaacccttcaatcgtgcca 11066957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 34 - 129
Target Start/End: Complemental strand, 34681920 - 34681825
Alignment:
Q  34 cacgttcctcctggatcgtgccacgatttttctagtggcaacccaaaaactgaaccattcaatcgtgccatgttgccctgcaaatgtgtcacgatt 129  Q
    ||||||||| |||||||||||||||||||||| |||| ||| || ||| ||||||||| ||||||||||| ||||||||||||| ||| |||||||    
T  34681920 cacgttcctactggatcgtgccacgatttttccagtgacaaacccaaacctgaaccatccaatcgtgccacgttgccctgcaaacgtgccacgatt 34681825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 26 - 129
Target Start/End: Original strand, 42269872 - 42269976
Alignment:
Q  26 catcatgacacgttcctcctggatcgtgccacgatttttctagtggcaacc-caaaaactgaaccattcaatcgtgccatgttgccctgcaaatgtgtca 124  Q
    ||||||| ||||||||||||||||| |||||||||||||| || | ||| | ||||| ||||||||| ||||||||||| ||||||||||||| ||| ||    
T  42269872 catcatgccacgttcctcctggatcctgccacgatttttccagcgacaaacgcaaaacctgaaccatccaatcgtgccacgttgccctgcaaacgtgcca 42269971  T
Q  125 cgatt 129  Q
    |||||    
T  42269972 cgatt 42269976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 37 - 129
Target Start/End: Original strand, 31056557 - 31056650
Alignment:
Q  37 gttcctcctggatcgtgccacgatttttctagtggcaa-cccaaaaactgaaccattcaatcgtgccatgttgccctgcaaatgtgtcacgatt 129  Q
    |||||| ||||||||||||| |||||||| |||| ||| ||||||| ||||||||| |||| |||||| ||||||||||||||||| |||||||    
T  31056557 gttccttctggatcgtgccatgatttttccagtgacaaacccaaaatctgaaccatccaattgtgccacgttgccctgcaaatgtgccacgatt 31056650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 469 - 543
Target Start/End: Complemental strand, 26545914 - 26545840
Alignment:
Q  469 atcaaacttgagacctcgtggaggagcacgctcccagatcctcagccaataccaccgaaccaatccaagtgggtt 543  Q
    |||||||||||||||||| | |||||||| || ||||||||  ||| ||||||||| |||||| |||||||||||    
T  26545914 atcaaacttgagacctcgagaaggagcacacttccagatcccaagctaataccaccaaaccaacccaagtgggtt 26545840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 169
Target Start/End: Complemental strand, 11066945 - 11066907
Alignment:
Q  131 ttccaaacttcaacatcaattttgagacacatttcaaca 169  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  11066945 ttccaaacttcaacatcaattttgagacaaatttcaaca 11066907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 439 - 471
Target Start/End: Complemental strand, 25637265 - 25637233
Alignment:
Q  439 aagaagttaaattagcccacctaaattggcatc 471  Q
    |||||||||||||||||||||||||||||||||    
T  25637265 aagaagttaaattagcccacctaaattggcatc 25637233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 469 - 543
Target Start/End: Complemental strand, 19016105 - 19016031
Alignment:
Q  469 atcaaacttgagacctcgtggaggagcacgctcccagatcctcagccaataccaccgaaccaatccaagtgggtt 543  Q
    |||||||||||||||||| |||||||||| ||||||  ||   ||||||||||| |  ||||| |||||||||||    
T  19016105 atcaaacttgagacctcgaggaggagcacactcccaagtctcaagccaataccatcagaccaacccaagtgggtt 19016031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 542
Target Start/End: Original strand, 37755977 - 37756046
Alignment:
Q  473 aacttgagacctcgtggaggagcacgctcccagatcctcagccaataccaccgaaccaatccaagtgggt 542  Q
    |||||||||||||| | ||||||||  |||||| |||  ||||||||||||| | |||| ||||||||||    
T  37755977 aacttgagacctcgagtaggagcacattcccaggtcccaagccaataccaccaagccaacccaagtgggt 37756046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 477 - 545
Target Start/End: Complemental strand, 39715058 - 39714990
Alignment:
Q  477 tgagacctcgtggaggagcacgctcccagatcctcagccaataccaccgaaccaatccaagtgggtttc 545  Q
    |||||||||| |||||||||| ||||||| |||  || ||||||||||   |||| |||||||||||||    
T  39715058 tgagacctcgaggaggagcacactcccaggtcccaagtcaataccaccatgccaacccaagtgggtttc 39714990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 1e-48; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 20 - 170
Target Start/End: Original strand, 28266008 - 28266158
Alignment:
Q  20 ctcctgcatcatgacacgttcctcctggatcgtgccacgatttttctagtggcaacccaaaaactgaaccattcaatcgtgccatgttgccctgcaaatg 119  Q
    |||||||||| || || ||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||| |    
T  28266008 ctcctgcatcgtgccatgttcctcttggatcgtgccacgatttttccagtggcaacccaaaatctgaaccattcaatcgtgccacgttgccctgcaaacg 28266107  T
Q  120 tgtcacgattgttccaaacttcaacatcaattttgagacacatttcaacaa 170  Q
    || || |||| || |||||||| ||||||||||||||||||||||||||||    
T  28266108 tgccatgattttttcaaacttccacatcaattttgagacacatttcaacaa 28266158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 20 - 169
Target Start/End: Complemental strand, 776994 - 776847
Alignment:
Q  20 ctcctgcatcatgacacgttcctcctggatcgtgccacgatttttctagtggcaacccaaaaactgaaccattcaatcgtgccatgttgccctgcaaatg 119  Q
    |||||||||| || |||||||||||||| ||||||||||||||||  | |||||| | |||||||||||||||||||||||||| ||| |||| |||| |    
T  776994 ctcctgcatcgtgccacgttcctcctgggtcgtgccacgattttttcaatggcaatc-aaaaactgaaccattcaatcgtgcca-gtttccctacaaacg 776897  T
Q  120 tgtcacgattgttccaaacttcaacatcaattttgagacacatttcaaca 169  Q
    || ||||||| |||||||||||||| ||||||||||||||||||||||||    
T  776896 tgccacgatttttccaaacttcaacttcaattttgagacacatttcaaca 776847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 41 - 169
Target Start/End: Original strand, 50167608 - 50167737
Alignment:
Q  41 ctcctggatcgtgccacgatttttctagtggcaacccaaaaa-ctgaaccattcaatcgtgccatgttgccctgcaaatgtgtcacgattgttccaaact 139  Q
    |||||| |||||||||||||||||| |||||||||||||||| ||||| ||||||||  || || ||||||||||||| ||| ||||||| |||||||||    
T  50167608 ctcctgcatcgtgccacgatttttccagtggcaacccaaaaaactgaatcattcaattatgtcacgttgccctgcaaacgtgccacgatttttccaaact 50167707  T
Q  140 tcaacatcaattttgagacacatttcaaca 169  Q
    ||||||| ||||||||||||||||||||||    
T  50167708 tcaacattaattttgagacacatttcaaca 50167737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 41 - 169
Target Start/End: Original strand, 50169630 - 50169759
Alignment:
Q  41 ctcctggatcgtgccacgatttttctagtggcaacccaaaa-actgaaccattcaatcgtgccatgttgccctgcaaatgtgtcacgattgttccaaact 139  Q
    |||||| |||||||||||||||||  ||||||||||||||| ||||||||||||||||||| || ||||||||||||| ||| ||||||| ||| |||||    
T  50169630 ctcctgcatcgtgccacgatttttacagtggcaacccaaaaaactgaaccattcaatcgtgtcacgttgccctgcaaacgtgccacgatttttctaaact 50169729  T
Q  140 tcaacatcaattttgagacacatttcaaca 169  Q
    |||||||||||||| ||| |||||||||||    
T  50169730 tcaacatcaattttaagagacatttcaaca 50169759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 39 - 170
Target Start/End: Original strand, 47256004 - 47256134
Alignment:
Q  39 tcctcctggatcgtgccacgatttttctagtggcaacccaaaaactgaaccattcaatcgtgccatgttgccctgcaaatgtgtcacgattgttccaaac 138  Q
    ||||||| ||||||||||||||||||| |||| |||| ||||  ||||||||| ||||||||||| ||||| ||||||| ||| ||||||| ||||| ||    
T  47256004 tcctcctagatcgtgccacgatttttccagtgacaactcaaac-ctgaaccatccaatcgtgccacgttgcactgcaaacgtgccacgatttttccagac 47256102  T
Q  139 ttcaacatcaattttgagacacatttcaacaa 170  Q
    |||| ||||||||||||| ||  |||||||||    
T  47256103 ttcaccatcaattttgagtcaattttcaacaa 47256134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 94 - 169
Target Start/End: Original strand, 8871591 - 8871666
Alignment:
Q  94 aatcgtgccatgttgccctgcaaatgtgtcacgattgttccaaacttcaacatcaattttgagacacatttcaaca 169  Q
    ||||||| || ||||||||||||| ||| ||||||| ||||| |||||||||||||||||||||||||||||||||    
T  8871591 aatcgtgtcacgttgccctgcaaacgtgccacgatttttccagacttcaacatcaattttgagacacatttcaaca 8871666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 40816439 - 40816348
Alignment:
Q  19 cctcctgcatcatgacacgttcctcctggatcgtgccacgatttttctagtggcaacccaaaaactgaaccattcaatcgtgccatgttgccc 111  Q
    ||||||||||| || |||||||||||||||||||||||||||||||| | || ||| || ||| ||||||||| ||||||| |||||||||||    
T  40816439 cctcctgcatcgtgccacgttcctcctggatcgtgccacgatttttccaatgacaaacc-aaacctgaaccatccaatcgtaccatgttgccc 40816348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 95 - 169
Target Start/End: Original strand, 45644824 - 45644898
Alignment:
Q  95 atcgtgccatgttgccctgcaaatgtgtcacgattgttccaaacttcaacatcaattttgagacacatttcaaca 169  Q
    ||||||||| ||||||||||||| ||| ||||||| |||||  ||||||| ||||||||||||||||||||||||    
T  45644824 atcgtgccacgttgccctgcaaacgtgccacgatttttccaggcttcaacttcaattttgagacacatttcaaca 45644898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 34 - 121
Target Start/End: Complemental strand, 47703524 - 47703437
Alignment:
Q  34 cacgttcctcctggatcgtgccacgatttttctagtggcaacccaaaaactgaaccattcaatcgtgccatgttgccctgcaaatgtg 121  Q
    ||||||||| ||||||||||| |||| ||||| || | ||| || |||  |||||||| ||||||||||| |||||||||||||||||    
T  47703524 cacgttccttctggatcgtgctacgaattttccagcgacaaacccaaatttgaaccatccaatcgtgccacgttgccctgcaaatgtg 47703437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 543
Target Start/End: Complemental strand, 1094639 - 1094525
Alignment:
Q  439 aagaagttaaattagcccacctaaattggc----------atcaaacttgagacctcgtggaggagcacgctcccagatcctcagccaataccaccgaac 528  Q
    ||||||||||||||||||||||||||||||          ||| || |||||||||||||||||||||| ||| ||| | |  || |||||||| | |||    
T  1094639 aagaagttaaattagcccacctaaattggcaccggagagaatcgaatttgagacctcgtggaggagcacactcacaggttccaagtcaataccaacaaac 1094540  T
Q  529 caatccaagtgggtt 543  Q
    ||| |||||||||||    
T  1094539 caacccaagtgggtt 1094525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 544
Target Start/End: Complemental strand, 25297846 - 25297771
Alignment:
Q  469 atcaaacttgagacctcgtggaggagcacgctcccagatcctcagccaataccaccgaaccaatccaagtgggttt 544  Q
    ||||||| | |||||||| |||||||||| ||| |||||||| || |||||||||   ||||| ||||||||||||    
T  25297846 atcaaacctcagacctcgaggaggagcacactctcagatcctaagtcaataccactagaccaacccaagtgggttt 25297771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 473 - 544
Target Start/End: Complemental strand, 40257469 - 40257398
Alignment:
Q  473 aacttgagacctcgtggaggagcacgctcccagatcctcagccaataccaccgaaccaatccaagtgggttt 544  Q
    |||||||||||||| |||||||||| ||||||| ||   |||||||||||||   |||| ||||||||||||    
T  40257469 aacttgagacctcgaggaggagcacactcccaggtctcaagccaataccaccaggccaacccaagtgggttt 40257398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 469 - 510
Target Start/End: Complemental strand, 17439991 - 17439950
Alignment:
Q  469 atcaaacttgagacctcgtggaggagcacgctcccagatcct 510  Q
    ||||||| |||||||||| |||||||||| ||||||||||||    
T  17439991 atcaaacatgagacctcgaggaggagcacactcccagatcct 17439950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 472
Target Start/End: Original strand, 21547442 - 21547475
Alignment:
Q  439 aagaagttaaattagcccacctaaattggcatca 472  Q
    ||||||||||| ||||||||||||||||||||||    
T  21547442 aagaagttaaactagcccacctaaattggcatca 21547475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 43342772 - 43342808
Alignment:
Q  134 caaacttcaacatcaattttgagacacatttcaacaa 170  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  43342772 caaacttcaacatcaattttgggacaaatttcaacaa 43342808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 3e-46; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 48 - 170
Target Start/End: Original strand, 12098247 - 12098369
Alignment:
Q  48 atcgtgccacgatttttctagtggcaacccaaaaactgaaccattcaatcgtgccatgttgccctgcaaatgtgtcacgattgttccaaacttcaacatc 147  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||||| || ||||||||||||| ||| ||||||| |||||||||||||||||    
T  12098247 atcgtgccacgatttttccagtggcaatccaaaaactgaaccattcaatcgtgtcacgttgccctgcaaacgtgccacgatttttccaaacttcaacatc 12098346  T
Q  148 aattttgagacacatttcaacaa 170  Q
    |||||||||||||||||||||||    
T  12098347 aattttgagacacatttcaacaa 12098369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 26 - 167
Target Start/End: Original strand, 24526344 - 24526486
Alignment:
Q  26 catcatgacacgttcctcctggatcgtgccacgatttttctagtggcaa-cccaaaaactgaaccattcaatcgtgccatgttgccctgcaaatgtgtca 124  Q
    ||||||| |||||||||||||||||||||||||||||||| |||| ||| ||||||| ||||||||| ||||||||||| ||||||||||||| ||| ||    
T  24526344 catcatgccacgttcctcctggatcgtgccacgatttttccagtgacaaacccaaaacctgaaccatccaatcgtgccacgttgccctgcaaacgtgcca 24526443  T
Q  125 cgattgttccaaacttcaacatcaattttgagacacatttcaa 167  Q
    ||||| |||||||||||||| ||||||||||||||||||||||    
T  24526444 cgatttttccaaacttcaacttcaattttgagacacatttcaa 24526486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 41 - 169
Target Start/End: Complemental strand, 8153080 - 8152947
Alignment:
Q  41 ctcctggatcgtgccacgatttttctagtggcaacccaaaaactgaaccattcaatcgtgccatgttgccctgcaaatgtgtcacgattgttccaaactt 140  Q
    |||||| |||||||||| ||||||| |||| ||||||||||| |||||||||||||| ||||||||||||||||||| ||| ||||| | ||||||||||    
T  8153080 ctcctgcatcgtgccacaatttttccagtgtcaacccaaaaattgaaccattcaatcctgccatgttgccctgcaaacgtgccacgagttttccaaactt 8152981  T
Q  141 caac-----atcaattttgagacacatttcaaca 169  Q
    ||||     |||||||||||||||||||||||||    
T  8152980 caacatcacatcaattttgagacacatttcaaca 8152947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 20 - 169
Target Start/End: Original strand, 41317867 - 41318034
Alignment:
Q  20 ctcctgcatcatgacacgttcctcctggatcgtgccacgatttttctagtggcaacccaaaaactgaac------------------cattcaatcgtgc 101  Q
    |||||||||| || |||||  |||||| |||||||||||||||||| ||||||||||||||||||||||                  |||||||||||||    
T  41317867 ctcctgcatcgtgccacgtatctcctgcatcgtgccacgatttttcgagtggcaacccaaaaactgaacaattcaatcgtgccacgtcattcaatcgtgc 41317966  T
Q  102 catgttgccctgcaaatgtgtcacgattgttccaaacttcaacatcaattttgagacacatttcaaca 169  Q
    || |||||||| |||| ||| ||||||| |||||||||||||| ||||||||||||||||||||||||    
T  41317967 cacgttgccctacaaacgtgccacgatttttccaaacttcaacttcaattttgagacacatttcaaca 41318034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 39 - 153
Target Start/End: Complemental strand, 22269464 - 22269351
Alignment:
Q  39 tcctcctggatcgtgccacgatttttctagtggcaacccaaaaactgaaccattcaatcgtgccatgttgccctgcaaatgtgtcacgattgttccaaac 138  Q
    ||||||||||||||||||||||||||| |||| |||||||||   ||||||||  |||||||||| ||||||||||||| ||| ||||||| ||||| ||    
T  22269464 tcctcctggatcgtgccacgatttttccagtgacaacccaaact-tgaaccatcaaatcgtgccacgttgccctgcaaacgtgccacgatttttccagac 22269366  T
Q  139 ttcaacatcaatttt 153  Q
    |||| ||||||||||    
T  22269365 ttcaccatcaatttt 22269351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 118
Target Start/End: Original strand, 29160270 - 29160353
Alignment:
Q  34 cacgttcctcctggatcgtgccacgatttttctagtggcaacccaaaaactgaaccattcaatcgtgccatgttgccctgcaaat 118  Q
    ||||||||||||||||||||||  |||||||| |||| |||  | ||| ||||||||  ||||||||||| ||||||||||||||    
T  29160270 cacgttcctcctggatcgtgccttgatttttc-agtgacaaagccaaacctgaaccaaccaatcgtgccacgttgccctgcaaat 29160353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 477 - 543
Target Start/End: Complemental strand, 48772004 - 48771938
Alignment:
Q  477 tgagacctcgtggaggagcacgctcccagatcctcagccaataccaccgaaccaatccaagtgggtt 543  Q
    |||||||||  |||||||||| |||||||||||  ||||||||||||| | |||| |||||||||||    
T  48772004 tgagacctcaaggaggagcacactcccagatcccaagccaataccaccaagccaacccaagtgggtt 48771938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 473 - 545
Target Start/End: Complemental strand, 2446378 - 2446306
Alignment:
Q  473 aacttgagacctcgtggaggagcacgctcccagatcctcagccaataccaccgaaccaatccaagtgggtttc 545  Q
    ||||||||| |||| |||||||||| ||||||  |||  ||||||||||| |  ||||| |||||||||||||    
T  2446378 aacttgagatctcgaggaggagcacactcccaagtcccaagccaataccatcagaccaacccaagtgggtttc 2446306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 3e-37; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 3039354 - 3039505
Alignment:
Q  19 cctcctgcatcatgacacgttcctcctggatcgtgccacgatttttctagtggcaa-cccaaaaactgaaccattcaatcgtgccatgttgccctgcaaa 117  Q
    |||||| |||| || ||||||||||||||||  |||||||||||||| || | ||| ||||||| ||||||||| ||||||||||| |||||||||||||    
T  3039354 cctcctccatcgtgccacgttcctcctggattttgccacgatttttccagcgacaaacccaaaatctgaaccatccaatcgtgccacgttgccctgcaaa 3039453  T
Q  118 tgtgtcacgattgttccaaacttcaacatcaattttgagacacatttcaaca 169  Q
     ||| ||||||| | |||||||||||||| ||||||||||||||||||||||    
T  3039454 cgtgccacgattttcccaaacttcaacataaattttgagacacatttcaaca 3039505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 330 - 570
Target Start/End: Complemental strand, 13441271 - 13441023
Alignment:
Q  330 ctcagacacatatttatctcacctatttttcaaaaccttatagagggatctccaaatgcagcccttccactgtataggtcactgaagccaatccnnnnnn 429  Q
    |||||||| |||||||| |||||||||||||||||||    |||||||||||||||||||||||||||| | ||||||||| ||||||||||            
T  13441271 ctcagacaaatatttatatcacctatttttcaaaacc----agagggatctccaaatgcagcccttccattatataggtcagtgaagccaat-----ttt 13441181  T
Q  430 nnnnnnnnnaagaagttaaattagcccacctaaattggc----------atcaaacttgagacctcgtggag-------gagcacgctcccagatcctca 512  Q
             |||||||||||||||||||| |||||||||          ||| |||||||||||||||||||       |||||| ||||||| |||  |    
T  13441180 tttttttttaagaagttaaattagcccacttaaattggcactgagaagaatcgaacttgagacctcgtggaggagcacagagcacactcccaggtcccaa 13441081  T
Q  513 gccaataccaccgaaccaatccaagtgggtttcagtgaagccaattttgtagtattat 570  Q
    ||||||||||||  ||||| |||||||| |||||||||||||||||||||||||||||    
T  13441080 gccaataccacccgaccaacccaagtggatttcagtgaagccaattttgtagtattat 13441023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 37 - 129
Target Start/End: Complemental strand, 21801005 - 21800913
Alignment:
Q  37 gttcctcctggatcgtgccacgatttttctagtggcaacccaaaaactgaaccattcaatcgtgccatgttgccctgcaaatgtgtcacgatt 129  Q
    ||||||| ||||||||||||||||||||| |||| ||| || ||| ||||||||| ||||||| ||| ||||||||||||| ||| |||||||    
T  21801005 gttcctcttggatcgtgccacgatttttccagtgacaaacccaaacctgaaccatccaatcgtaccacgttgccctgcaaacgtgccacgatt 21800913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 470 - 544
Target Start/End: Original strand, 31622994 - 31623068
Alignment:
Q  470 tcaaacttgagacctcgtggaggagcacgctcccagatcctcagccaataccaccgaaccaatccaagtgggttt 544  Q
    |||||| |||||||||| |||||||||| ||||||| |||  |||||||||||||| ||||| ||||||||||||    
T  31622994 tcaaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccggaccaacccaagtgggttt 31623068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 477 - 544
Target Start/End: Complemental strand, 33549170 - 33549103
Alignment:
Q  477 tgagacctcgtggaggagcacgctcccagatcctcagccaataccaccgaaccaatccaagtgggttt 544  Q
    |||||||||| |||||||||| ||||||| |||  |||||||||||||  ||||| ||||||||||||    
T  33549170 tgagacctcgaggaggagcacactcccaggtcccaagccaataccaccagaccaacccaagtgggttt 33549103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 137 - 170
Target Start/End: Complemental strand, 4045045 - 4045012
Alignment:
Q  137 acttcaacatcaattttgagacacatttcaacaa 170  Q
    ||||||||||||||||||||||||||||||||||    
T  4045045 acttcaacatcaattttgagacacatttcaacaa 4045012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 524
Target Start/End: Original strand, 6776609 - 6776664
Alignment:
Q  469 atcaaacttgagacctcgtggaggagcacgctcccagatcctcagccaataccacc 524  Q
    |||||||||||||| ||| |||||||||| | |||||||||  |||||||||||||    
T  6776609 atcaaacttgagacatcgaggaggagcacacccccagatcccaagccaataccacc 6776664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 439 - 469
Target Start/End: Original strand, 24641152 - 24641182
Alignment:
Q  439 aagaagttaaattagcccacctaaattggca 469  Q
    |||||||||||||||||||||||||||||||    
T  24641152 aagaagttaaattagcccacctaaattggca 24641182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 477 - 543
Target Start/End: Complemental strand, 30127466 - 30127400
Alignment:
Q  477 tgagacctcgtggaggagcacgctcccagatcctcagccaataccaccgaaccaatccaagtgggtt 543  Q
    ||||||||||  ||||||||| |||||||| ||  |||||||||||||  ||||| |||||||||||    
T  30127466 tgagacctcgaagaggagcacactcccagaccccaagccaataccaccagaccaacccaagtgggtt 30127400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 524
Target Start/End: Original strand, 6758430 - 6758479
Alignment:
Q  475 cttgagacctcgtggaggagcacgctcccagatcctcagccaataccacc 524  Q
    |||||||||||| || ||||||| |||||| ||||| |||||||||||||    
T  6758430 cttgagacctcgaggtggagcacactcccaaatcctaagccaataccacc 6758479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 3e-25; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 23 - 129
Target Start/End: Original strand, 10282208 - 10282315
Alignment:
Q  23 ctgcatcatgacacgttcctcctggatcgtgccacgatttttctagtggcaa-cccaaaaactgaaccattcaatcgtgccatgttgccctgcaaatgtg 121  Q
    ||||||| || |||||||||||||||||||||||||||||||| || | ||| ||||||| ||||||||| ||||||||||| ||||||||||||| |||    
T  10282208 ctgcatcgtgccacgttcctcctggatcgtgccacgatttttccagcgacaaacccaaaacctgaaccatccaatcgtgccacgttgccctgcaaacgtg 10282307  T
Q  122 tcacgatt 129  Q
     |||||||    
T  10282308 ccacgatt 10282315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 39 - 170
Target Start/End: Complemental strand, 28277824 - 28277694
Alignment:
Q  39 tcctcctggatcgtgccacgatttttctagtggcaacccaaaaactgaaccattcaatcgtgccatgttgccctgcaaatgtgtcacgattgttccaaac 138  Q
    ||||||||||||||||||| ||||||| | || |||||||||  || |||||| ||||||||||| ||||||||||||| ||| ||||||| ||| | ||    
T  28277824 tcctcctggatcgtgccacaatttttccaatgacaacccaaac-ctaaaccatccaatcgtgccacgttgccctgcaaacgtgccacgatttttctagac 28277726  T
Q  139 ttcaacatcaattttgagacacatttcaacaa 170  Q
    |||| ||||||||||||| ||  |||||||||    
T  28277725 ttcaccatcaattttgagtcaattttcaacaa 28277694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 34 - 129
Target Start/End: Original strand, 3881241 - 3881337
Alignment:
Q  34 cacgttcctcctggatcgtgccacgatttttctagtggcaa-cccaaaaactgaaccattcaatcgtgccatgttgccctgcaaatgtgtcacgatt 129  Q
    |||||||||||||||||||||||||||||||| |  |  || ||||||| ||||||||| ||||||||||| ||||||||||||| ||| |||||||    
T  3881241 cacgttcctcctggatcgtgccacgatttttccaacgataaacccaaaacctgaaccatccaatcgtgccacgttgccctgcaaacgtgccacgatt 3881337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 543
Target Start/End: Complemental strand, 16773921 - 16773807
Alignment:
Q  439 aagaagttaaattagcccacctaaattggcatca----------aacttgagacctcgtggaggagcacgctcccagatcctcagccaataccaccgaac 528  Q
    |||||| |||||||||||||||||||||||||||          ||| |||||||||| |||||||||| ||||||| |||  || ||||||||||  ||    
T  16773921 aagaagctaaattagcccacctaaattggcatcagagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagtcaataccaccagac 16773822  T
Q  529 caatccaagtgggtt 543  Q
    |||  ||||||||||    
T  16773821 caactcaagtgggtt 16773807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 473 - 544
Target Start/End: Original strand, 30883204 - 30883275
Alignment:
Q  473 aacttgagacctcgtggaggagcacgctcccagatcctcagccaataccaccgaaccaatccaagtgggttt 544  Q
    |||||||||||| | |||||||||| ||||||| |||  ||||||||||||   ||||| ||||||||||||    
T  30883204 aacttgagaccttgaggaggagcacactcccaggtcccaagccaataccactagaccaacccaagtgggttt 30883275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 469 - 543
Target Start/End: Original strand, 8278277 - 8278351
Alignment:
Q  469 atcaaacttgagacctcgtggaggagcacgctcccagatcctcagccaataccaccgaaccaatccaagtgggtt 543  Q
    ||||||||||||| |||| |||||||||| ||||||  |||  ||||||||||| |  ||||| |||||||||||    
T  8278277 atcaaacttgagatctcgaggaggagcacactcccaagtcccaagccaataccatcagaccaacccaagtgggtt 8278351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 477 - 543
Target Start/End: Original strand, 14495815 - 14495881
Alignment:
Q  477 tgagacctcgtggaggagcacgctcccagatcctcagccaataccaccgaaccaatccaagtgggtt 543  Q
    |||||||||| |||||||||| |||||||||||  || ||||||||||  ||||| |||| ||||||    
T  14495815 tgagacctcgaggaggagcacactcccagatcccaagtcaataccaccagaccaacccaaatgggtt 14495881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 439 - 543
Target Start/End: Original strand, 15285 - 15399
Alignment:
Q  439 aagaagttaaattagcccacctaaattggcatca----------aacttgagacctcgtggaggagcacgctcccagatcctcagccaataccaccgaac 528  Q
    |||||| ||||||||||||||||||||||||||           ||| |||||||||| |||||||||| ||||||| |||  |||||||||||||  ||    
T  15285 aagaagctaaattagcccacctaaattggcatccgagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccagac 15384  T
Q  529 caatccaagtgggtt 543  Q
    ||| |||||||||||    
T  15385 caacccaagtgggtt 15399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 34 - 129
Target Start/End: Complemental strand, 5544 - 5447
Alignment:
Q  34 cacgttcctcctggatcgtgccacg-atttttctagtggcaa-cccaaaaactgaaccattcaatcgtgccatgttgccctgcaaatgtgtcacgatt 129  Q
    ||||||| | ||| ||||||||||| ||||||| || | ||| ||||||| |||||||||  |||||||||| ||||||||||||| |||||| ||||    
T  5544 cacgttctttctgcatcgtgccacgtatttttccagcgacaaacccaaaatctgaaccatctaatcgtgccacgttgccctgcaaacgtgtcatgatt 5447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 469 - 545
Target Start/End: Original strand, 32771 - 32847
Alignment:
Q  469 atcaaacttgagacctcgtggaggagcacgctcccagatcctcagccaataccaccgaaccaatccaagtgggtttc 545  Q
    ||||||||| | |||| | |||||||| | | ||||||||||||||||||||||||   |||| |||||||||||||    
T  32771 atcaaacttaaaaccttgaggaggagcgcacccccagatcctcagccaataccaccaggccaacccaagtgggtttc 32847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 524
Target Start/End: Complemental strand, 11594 - 11547
Alignment:
Q  477 tgagacctcgtggaggagcacgctcccagatcctcagccaataccacc 524  Q
    |||||||||| |||||||||| |||||||||||  |||||||||||||    
T  11594 tgagacctcgaggaggagcacactcccagatcccaagccaataccacc 11547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 477 - 543
Target Start/End: Original strand, 2480 - 2546
Alignment:
Q  477 tgagacctcgtggaggagcacgctcccagatcctcagccaataccaccgaaccaatccaagtgggtt 543  Q
    |||||||| | |||||||||| |||||||||||  | |||||||||||| ||||| |||| ||||||    
T  2480 tgagaccttgaggaggagcacactcccagatccaaaaccaataccaccggaccaacccaaatgggtt 2546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University