View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19390_low_6 (Length: 401)
Name: NF19390_low_6
Description: NF19390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19390_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 32372185 - 32371801
Alignment:
| Q |
1 |
ccagacaaaatagaaaagaggaacatatcagactggacaaagcattgcaaaccagacaaacgaaaaaagagaagaggaccacaaacctgacatgcgaaca |
100 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32372185 |
ccaggcaaaatagaaaagaggaacacatcagactggacaaagcattgcaaaccagacaaacgaaaaaagagaagaggaccacaaacctgacatgcgaaca |
32372086 |
T |
|
| Q |
101 |
caagagaaggccgaaaaaacacagtgcaactcgtctgagacgaaagccagagatgacacaaagcaacagtatcacacagagatttaagagaaacacaaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
32372085 |
caagagaaggccgaaaaaacacagtgcaactcgtctgagacgaaagccagagatgacacaaagcaacagtgtcacacagagatgtaagagaaacacaaag |
32371986 |
T |
|
| Q |
201 |
actagagattagagaagatattaggatacaactcttagaattcaataaactgtgaggcggtactgcgatttgggcttttttagnnnnnnnttcgaactcc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32371985 |
actagagattagagaagatattaggatacaactcttagaattcaataaactgtgaggcggtactgcgatttgggcttttttagaaaaaaattcgaactcc |
32371886 |
T |
|
| Q |
301 |
ataatcgtgagcttttctcgcatctgtccagaaaacgattatgttggcgagccaacttgtatgggttgctgggctcgtaaacttg |
385 |
Q |
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||||||||||| |||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
32371885 |
ataatcgtgagtttttctcgcatctgtccagaaaacgaatatgttcgtgagccaacttgtatgggttgctgggctcgtaaacttg |
32371801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 334 - 385
Target Start/End: Original strand, 32364989 - 32365040
Alignment:
| Q |
334 |
aacgattatgttggcgagccaacttgtatgggttgctgggctcgtaaacttg |
385 |
Q |
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|||||||||||| ||||| |||||||||||||| ||||| |||||||||||| |
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| T |
32364989 |
aacgattatgttcgcgagtcaacttgtatgggtagctggactcgtaaacttg |
32365040 |
T |
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