View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19390_low_7 (Length: 391)

Name: NF19390_low_7
Description: NF19390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19390_low_7
NF19390_low_7
[»] scaffold0174 (3 HSPs)
scaffold0174 (179-246)||(32011-32078)
scaffold0174 (306-376)||(32138-32208)
scaffold0174 (17-105)||(31850-31937)
[»] chr4 (1 HSPs)
chr4 (330-371)||(24895158-24895199)


Alignment Details
Target: scaffold0174 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 179 - 246
Target Start/End: Original strand, 32011 - 32078
Alignment:
Q  179 acgtccatagttttgtcctcttcccgaactgtattcagtccctcctcccgaaccgccttcatttcgtc 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  32011 acgtccatagttttgtcctcttcccgaactgtattcagtccctcctcccaaaccggcttcatttcgtc 32078  T

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Target: scaffold0174; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 306 - 376
Target Start/End: Original strand, 32138 - 32208
Alignment:
Q  306 agccaatttatcacttttctgaaaaatccatcaacatttcctccctcttggtctccattgtgtccaccttc 376  Q
    |||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  32138 agccaatttatcacttttcccaaaaatccatcaacatttcctccctcatggtctccattgtgtccaccttc 32208  T

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Target: scaffold0174; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 31850 - 31937
Alignment:
Q  17 attcacacataattttttgttttcattgatgttccatgagccctccatttattttannnnnnnggctcttccttctccttatcccaaac 105  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||        |||||||||||||||||||||||||    
T  31850 attcacacttaattttttgttttcattgatgttccatgagccctccatatattttattttttt-gctcttccttctccttatcccaaac 31937  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 330 - 371
Target Start/End: Original strand, 24895158 - 24895199
Alignment:
Q  330 aatccatcaacatttcctccctcttggtctccattgtgtcca 371  Q
    |||||||||||||||||||| || ||||||||||||||||||    
T  24895158 aatccatcaacatttcctccttcatggtctccattgtgtcca 24895199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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