View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19390_low_9 (Length: 302)
Name: NF19390_low_9
Description: NF19390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19390_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 49258366 - 49258648
Alignment:
| Q |
1 |
caacaaataaatgatgatgagtttctgcataaccacgttcactcacacatatataatccactcatctccggtgaagaagaaaaagaagttttgttagtac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49258366 |
caacaaataaatgatgatgagtttctgcataaccacgttcactcacacatat--aatccactcatctccggtgaagaagaaaaagaagttttgttagtac |
49258463 |
T |
|
| Q |
101 |
aaaagctttaaccgtatgttctggtcaaagtccataaagctcaagtcaatcttctggaccatcgaataagtgaagtgaagaaaatcatctggatcattgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
49258464 |
aaaagctttaaccgtatgttctggtcaaagtccataaagctcaagtcaatcttctggaccatcgaataagtgaagtgaagaaaatcatctggatcgttgt |
49258563 |
T |
|
| Q |
201 |
tcaaactgtttcatttgggtcattgttcaaagcaatttgtctgaatttctgttcaag-cggttcttctggattacttctcaaatc |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
49258564 |
tcaaactgtttcatttgggtcattgttcaaagcaatttgtctgaatttctgttcaagacggttcttctggattacttctcaaatc |
49258648 |
T |
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