View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19391_high_10 (Length: 322)

Name: NF19391_high_10
Description: NF19391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19391_high_10
NF19391_high_10
[»] chr5 (1 HSPs)
chr5 (15-307)||(43098703-43098995)


Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 15 - 307
Target Start/End: Complemental strand, 43098995 - 43098703
Alignment:
Q  15 tatactaatgtaagtgtcatcaaatggtgagctagacctgacatacaagttttagacagtagtactatatgattttgcattttgcaagctgctgttagtc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  43098995 tatactaatgtaagtgtcatcaaatggtgagctagacctgacatacaagttttagacggtagtactatatgattttgcattttgcaagcagctgttagtc 43098896  T
Q  115 tgttacatgttctagttttcgaactttattaaatgctgaccaaacttgtctcttttgcctgacattgttacagctagtttaacatgcatgggttaattta 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43098895 tgttacatgttctagttttcgaactttattaaatgctgaccaaacttgtctcttttgcctgacattgttacagctagtttaacatgcatgggttaattta 43098796  T
Q  215 tccctaaaccaaatacaaagaaacgaatcagtgtcctctgtagtaacttttgtagctttcttttttaataagtcactgttttaccaacttact 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43098795 tccctaaaccaaatacaaagaaacgaatcagtgtcctctgtagtaacttttgtagctttcttttttaataagtcactgttttaccaacttact 43098703  T

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