View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19391_high_15 (Length: 248)
Name: NF19391_high_15
Description: NF19391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19391_high_15 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 105 - 230
Target Start/End: Original strand, 32869030 - 32869152
Alignment:
| Q |
105 |
atcaccaccatcatctcctgatggttctcaatc---aggaagtctgtcacctccatcattgctgcctcatgctccaattccatcaggtggcgaactgctt |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||| | ||||| |||||| |
|
|
| T |
32869030 |
atcaccaccatcatctcctgatggttctcaatcaggaggaagtctgtcacctccatcattgctccctcatgc------tccatcaagaggcgagctgctt |
32869123 |
T |
|
| Q |
202 |
ccacattcttcttcaagcattgcatttgg |
230 |
Q |
| |
|
| | |||||||||||||||||||||||| |
|
|
| T |
32869124 |
cagctttcttcttcaagcattgcatttgg |
32869152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 32868984 - 32869038
Alignment:
| Q |
5 |
cttttctatcgcggtctaatgcttttctaccaagacgtccgccatcatcgccacc |
59 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
32868984 |
cttttctatcgcggtctaatgcttttctaccaagacgtctgccatcatcaccacc |
32869038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University