View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19391_high_4 (Length: 459)
Name: NF19391_high_4
Description: NF19391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19391_high_4 |
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| [»] scaffold0771 (1 HSPs) |
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Alignment Details
Target: scaffold0771 (Bit Score: 126; Significance: 8e-65; HSPs: 1)
Name: scaffold0771
Description:
Target: scaffold0771; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 8 - 145
Target Start/End: Complemental strand, 1458 - 1321
Alignment:
| Q |
8 |
ataatactctatcataaaggtagatagaattgtagtttccaaactagtggaaagttattgctggatatgtggtcagtggcttcctaatatatctcgttct |
107 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1458 |
ataatactctatcataaaggtagacagaattgtagtttccaaactagtgaaaagttattgctggatatgtggtcagtggcttcctaatatatctcgttct |
1359 |
T |
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| Q |
108 |
tcacttaccgcaacataataatcatatttataccaaca |
145 |
Q |
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| T |
1358 |
tcacttaccgcaacataataatcatattcataccaaca |
1321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 126; Significance: 8e-65; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 8 - 145
Target Start/End: Complemental strand, 13949318 - 13949181
Alignment:
| Q |
8 |
ataatactctatcataaaggtagatagaattgtagtttccaaactagtggaaagttattgctggatatgtggtcagtggcttcctaatatatctcgttct |
107 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13949318 |
ataatactctatcataaaggtagacagaattgtagtttccaaactagtgaaaagttattgctggatatgtggtcagtggcttcctaatatatctcgttct |
13949219 |
T |
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| Q |
108 |
tcacttaccgcaacataataatcatatttataccaaca |
145 |
Q |
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| T |
13949218 |
tcacttaccgcaacataataatcatattcataccaaca |
13949181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 112 - 278
Target Start/End: Complemental strand, 20899429 - 20899267
Alignment:
| Q |
112 |
ttaccgcaacataataatcatatttataccaacatacagttatcataaaccaataaatgggaagtaaaaactcatgcatttcaagttacacattgttttg |
211 |
Q |
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| T |
20899429 |
ttaccgcaacataataatcatattcataccaacatatagttatcataaaccaaa----gggaagtaaaaactcatgcgtttcaagctacacattattttg |
20899334 |
T |
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| Q |
212 |
gcgtttgcattagttgaaaacatgacaaaaacacaagaatgttaattaaagaacatacttatggttc |
278 |
Q |
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| T |
20899333 |
gcgttttcattaattgaaaacatgacaaaaacacaagaatgatatttaaagaacagtcttatggttc |
20899267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 342 - 444
Target Start/End: Complemental strand, 20899207 - 20899105
Alignment:
| Q |
342 |
ctatcaggtcaaacggatctcagttagttaacaaacatccccgtccgcagcacaagctcctcagtctctttgatcagatattctgtaagcaacggtgctt |
441 |
Q |
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|||||||||||||||||||| ||| ||| |||||| |||||||| |||| | |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
20899207 |
ctatcaggtcaaacggatctaagtaagtgtacaaacctccccgtctgcagtataagctcctcagtctctttgatcagatcttctgtaagcaacggtgctt |
20899108 |
T |
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| Q |
442 |
cct |
444 |
Q |
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||| |
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| T |
20899107 |
cct |
20899105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 89
Target Start/End: Complemental strand, 20899475 - 20899429
Alignment:
| Q |
43 |
tttccaaactagtggaaagttattgctggatatgtggtcagtggctt |
89 |
Q |
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|||||||||| ||| ||||||||||||| |||| ||||||||||||| |
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| T |
20899475 |
tttccaaacttgtgaaaagttattgctgaatatttggtcagtggctt |
20899429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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