View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19391_low_1 (Length: 696)

Name: NF19391_low_1
Description: NF19391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19391_low_1
NF19391_low_1
[»] chr1 (1 HSPs)
chr1 (53-655)||(52512030-52512657)


Alignment Details
Target: chr1 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 53 - 655
Target Start/End: Original strand, 52512030 - 52512657
Alignment:
Q  53 gaaatgagcaaagtagaagaatgaatgataccataacaattaggacattcagtaaattcataaacatcttgtgctcgcttcctgttaagagctttccatt 152  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52512030 gaaatgagcaaattagaagaatgaatgataccataacaattaggacattcagtaaattcataaacatcttgtgctcgcttcctgttaagagctttccatt 52512129  T
Q  153 ttcctgtaccaccacacatatcacctaaatgaaa----------agtagtattataataaggaagaagaatattattatta-----------aaaaagaa 231  Q
    ||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||| | |||||||||||           | ||||||    
T  52512130 ttcctgtaccaccacacatatcacctaaatgaaatgaaatgaaaagtagtattataataaggaagaatattattattattattattattataacaaagaa 52512229  T
Q  232 tgaggagaaaagagaagaggactcacaaatgatgttaccacttccaccacaatttctgcaaccaggaggcttatcaagagcggttgctgctgagttggtt 331  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52512230 tgaagagaaaagagaagaggactcacaaatgatgttaccacttccaccacaatttctgcaaccaggaggcttatcaagagcggttgctgctgagttggtt 52512329  T
Q  332 gcattaattaaaaatggagttgaacacaaacatttaagacattgacgcctcgaaacaannnnnnnnnnnnnnnnnnnnnnnnnctatatgaatgcaatta 431  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                         |||||||||||||||||    
T  52512330 gcattaattaaaaatggagttgaacacaaacatttaagacattgacgcctcgaaacaacttcttcttcttcttcttcttcttcctatatgaatgcaatta 52512429  T
Q  432 attaagttaatgatgag----tgagtgagtaattgaaattgaattgaaactcgtatataaacatacatacataccttggaggaagaatgatatccttgat 527  Q
    |||||||||||||||||    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  52512430 attaagttaatgatgagtgagtgagtgagtaattgaaattgaattgaaactcatatataaacatacatacataccttggaggaagaatgatatccttgat 52512529  T
Q  528 tttgaggaagagtggatttaacaataaaacaacgcgtccttcctgtttgtttgatggaagttggaggaaggcatcgaggaataacagacgcctgcaaatt 627  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52512530 tttgaggaagagtggatttaacaataaaacaacgcgtccttcctgtttgtttgatggaagttggaggaaggcatcgaggaataacagacgcctgcaaatt 52512629  T
Q  628 gcaatccattgagatatgaagaatagag 655  Q
    ||||||||||||||||||||||||||||    
T  52512630 gcaatccattgagatatgaagaatagag 52512657  T

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