View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19391_low_17 (Length: 238)
Name: NF19391_low_17
Description: NF19391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19391_low_17 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 30810931 - 30810697
Alignment:
| Q |
1 |
aacatacacaggagaggggaaatgtggagaccctggatcgaacccaggcacacacataaaatatcctcacagccaaaccactatatcataacaacgcaga |
100 |
Q |
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| T |
30810931 |
aacatacacaggagaggggaaatgtggagaccctggatcgaacccaggcacacacataaaatatcctcacagccaaaccactatatcataacaacgcaga |
30810832 |
T |
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| Q |
101 |
ctatagtgataatatatcaaatgaaattgaaaacnnnnnnnnntatctacaatcttttcgttcttcacnnnnnnnnnnnnnnnnnnnnntggaagtcaaa |
200 |
Q |
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| T |
30810831 |
ctatagtgataatatatcaaatgaaattgaaaacaaaaaaaaatatctacaatcttttcgttcttcac---aaaaaaaaaaaaaaatattggaagtcaaa |
30810735 |
T |
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| Q |
201 |
tttaaagaatttattgcttgcccaatttatatctcatc |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
30810734 |
tttaaagaatttattgcttgcccaatttatatctcatc |
30810697 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 16807972 - 16807930
Alignment:
| Q |
54 |
acataaaatatcctcacagccaaaccactatatcataacaacg |
96 |
Q |
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||||||||| ||||||||||||||||||||| | ||||||||| |
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| T |
16807972 |
acataaaatgtcctcacagccaaaccactatgttataacaacg |
16807930 |
T |
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