View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19391_low_2 (Length: 688)
Name: NF19391_low_2
Description: NF19391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19391_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 465; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 5 - 604
Target Start/End: Complemental strand, 781872 - 781255
Alignment:
| Q |
5 |
tgtcgaagaatataagatgaatacgagaaaattaaactagaagttactcttnnnnnnnnntcagcaagaattaattgcataatgtggatcttacaagtct |
104 |
Q |
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| T |
781872 |
tgtcgaagcatataagatgaatacgagaaaattaaactagaagttactcttaaaaaaaaatcagcaagaattaattgcataatgtggaccttacaagtct |
781773 |
T |
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| Q |
105 |
catacaaagtataagtatcgctaagatcacatcatatccgtttcacaataagaatgacaaatatttaccatatctactcttaaatatttaccatctaccc |
204 |
Q |
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| T |
781772 |
catacaaagtataagtattgccaagatcacatcatatccgtttcacaataagaatgacaaatatttaccatatctactcttaaatatttaccatctaccc |
781673 |
T |
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| Q |
205 |
ttatgttgaaccaaacatacaatgacatactagagaccttaaaaagtgtctcaataattttataaaatcttattgatcaactataagattaagatatatt |
304 |
Q |
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| T |
781672 |
ttatgttgaaccaaacatacaatgacatactagagaccttaaaaagtgtctcaataattttataaaatcttattgatcaactatgagattaagatatatt |
781573 |
T |
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| Q |
305 |
taaatggttatatcataacttacaatcttccttcattcccataatatatgattagtttcacgttaactatttattctcaaaa------------tatatt |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| | |||| |
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| T |
781572 |
taaatggttatatcataacttacaatcttccttcattcccataatatatgattagtttcacggtaactacttattctcaaaatttggttttatttttatt |
781473 |
T |
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| Q |
393 |
tgtttcgaagagtacggtaaaactacacacactaaatgttgaaaaatttagaattaaag-------ttctaatgaacctacaccagaacatatcaaattt |
485 |
Q |
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| T |
781472 |
tgtttcgaagagta-ggtaaaactacacacactaaatattgaaaaatttagaattaaagttctaacttctaataaacctacaccgcaacatatcaaattt |
781374 |
T |
|
| Q |
486 |
ctccgtatcattttaccatctaaattatacactctttttaagcatgagttgtacacttaactttacaacacatttatttttatcttttactgatttttag |
585 |
Q |
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| T |
781373 |
ctccgtatcattttaccatctaaattatacactctttttaagcatgagttgtacacttaactttacaacacatttatttttatcttttactgatttttag |
781274 |
T |
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| Q |
586 |
gatgaaatttggtcctata |
604 |
Q |
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| T |
781273 |
gatgaaatttggtcatata |
781255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 602 - 688
Target Start/End: Complemental strand, 781208 - 781122
Alignment:
| Q |
602 |
atattaatgtttgtttcaagccccactcagtcctgaaatcattaatagggtgggaatgcccataagcaaaggaaagcacaaaaatgg |
688 |
Q |
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| T |
781208 |
atattaatgtttgtttcaagccccactcagtcctgaaatcattaatagggtgggaatgcccataagcaaaggaaagcacaaaaatgg |
781122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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