View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19391_low_20 (Length: 225)
Name: NF19391_low_20
Description: NF19391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19391_low_20 |
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| [»] scaffold0189 (1 HSPs) |
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| [»] scaffold0154 (2 HSPs) |
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Alignment Details
Target: scaffold0189 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 22 - 207
Target Start/End: Complemental strand, 1072 - 887
Alignment:
| Q |
22 |
aagttcatctaacactaatccaactatctaattccgacgaactcaccagccgttcatcagtcacaagctgccagagccggtccgccgcggagaaaaattt |
121 |
Q |
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| T |
1072 |
aagttcatctaacactaatccaactatctaattccgacgaactcaccagccgttcatcagtcacaagctgccagagccggtccgccgcggagcaaaattt |
973 |
T |
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| Q |
122 |
ggaatcaaaatcccatggacttgattcttccgattccggtgaattcggaaccgaatcagtctcactagaaacccaatcattgaaat |
207 |
Q |
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| T |
972 |
ggaatcaaaatcccatggacttgattcttccgattccggtgaattcggaaccgaatcagtcgcactagaaacccaatcattgaaat |
887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0154 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: scaffold0154
Description:
Target: scaffold0154; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 25 - 207
Target Start/End: Original strand, 14267 - 14449
Alignment:
| Q |
25 |
ttcatctaacactaatccaactatctaattccgacgaactcaccagccgttcatcagtcacaagctgccagagccggtccgccgcggagaaaaatttgga |
124 |
Q |
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| T |
14267 |
ttcacctaacactaatccaactatctgatctcgaccaactcatcggcccttgatcagtcacaagctgccggagccgatccaccgcggaacaaaatttaga |
14366 |
T |
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| Q |
125 |
atcaaaatcccatggacttgattcttccgattccggtgaattcggaaccgaatcagtctcactagaaacccaatcattgaaat |
207 |
Q |
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| T |
14367 |
atcaaaatcccattgatttgagtcttccgattccggtgaacttggaactgaatcactagcatcggaaacccaatcattgaaat |
14449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0154; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 25 - 207
Target Start/End: Original strand, 23687 - 23869
Alignment:
| Q |
25 |
ttcatctaacactaatccaactatctaattccgacgaactcaccagccgttcatcagtcacaagctgccagagccggtccgccgcggagaaaaatttgga |
124 |
Q |
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|||| ||||||||||||||||||||| |||||||| |||||||| || |||| | |||| ||||| || |||||||||| |||| || || | || |
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| T |
23687 |
ttcacctaacactaatccaactatctgattccgaccaactcaccggcttttcaaccgtcagaagcttcccgagccggtccaccgcagaatcaatactaga |
23786 |
T |
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| Q |
125 |
atcaaaatcccatggacttgattcttccgattccggtgaattcggaaccgaatcagtctcactagaaacccaatcattgaaat |
207 |
Q |
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| T |
23787 |
atcaacatcccatggacttaactcttccaattccggtgaattcggagcagaatcattcacactagaaacccaatcattgaaat |
23869 |
T |
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