View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19391_low_5 (Length: 428)

Name: NF19391_low_5
Description: NF19391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19391_low_5
NF19391_low_5
[»] chr3 (26 HSPs)
chr3 (1-360)||(28000000-28000359)
chr3 (16-413)||(27910978-27911375)
chr3 (16-413)||(28179018-28179415)
chr3 (49-413)||(28049158-28049522)
chr3 (16-360)||(28080864-28081205)
chr3 (16-360)||(11409945-11410289)
chr3 (16-351)||(27972778-27973110)
chr3 (16-324)||(27462885-27463190)
chr3 (16-360)||(28512024-28512374)
chr3 (16-360)||(28470978-28471328)
chr3 (167-357)||(26626757-26626944)
chr3 (282-360)||(28483210-28483288)
chr3 (16-123)||(17747610-17747714)
chr3 (16-123)||(19048930-19049034)
chr3 (16-320)||(26211143-26211444)
chr3 (98-333)||(26181425-26181657)
chr3 (18-74)||(18029697-18029753)
chr3 (9-198)||(27434099-27434288)
chr3 (219-299)||(17747428-17747508)
chr3 (219-299)||(19048748-19048828)
chr3 (96-320)||(26238386-26238607)
chr3 (235-300)||(18714045-18714110)
chr3 (16-57)||(28491328-28491369)
chr3 (18-79)||(26134177-26134238)
chr3 (1-49)||(18080186-18080234)
chr3 (188-252)||(26134004-26134068)
[»] scaffold0067 (1 HSPs)
scaffold0067 (20-197)||(24549-24726)
[»] scaffold0043 (1 HSPs)
scaffold0043 (18-78)||(70977-71034)
[»] scaffold1236 (1 HSPs)
scaffold1236 (235-300)||(1934-1999)
[»] scaffold0836 (2 HSPs)
scaffold0836 (236-300)||(4607-4671)
scaffold0836 (16-44)||(4860-4888)


Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 28000000 - 28000359
Alignment:
Q  1 ttcatactgtcttcccatatgggaacgtgctcaatgtctttcaataccatcacatatcttgtgcaatattaaagagattagactgaagaatatttcgaag 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  28000000 ttcatactgtctacccatatgggaacgtgctcaatgtctttcaataccatcacatatcttgtgcaatattaaagagattacactgaataatatttcgaag 28000099  T
Q  101 atgaaatcagtattcatcctatccattgctcgaagaatgttgctggagactttgacaatcagtaagtgtgatgagttgaagcacatcataatagacatgg 200  Q
    ||||||||||||||||||||||| ||||||| |||||||||| ||||  | |||||||| |||||||||||||| |||||||| || ||||||||| | |    
T  28000100 atgaaatcagtattcatcctatctattgctccaagaatgttgttggaatcattgacaattagtaagtgtgatgaattgaagcatattataatagacgttg 28000199  T
Q  201 gagatcatgacaacaatggtggcaataacttggtcaatgtcttcccaaaattaagagctgtcaatgttgaagattgtgagaaattggaatacataattgg 300  Q
      |||||| |||||| ||||| ||||||||||||| ||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||    
T  28000200 atgatcataacaacactggtgccaataacttggtctatgtcttcccaaaattaagagatatcgatgttgaagattgtgagaaattggaatacataattgg 28000299  T
Q  301 acacttcaatgatgatcatcaaaaccacactgagattcatcttcatcttccagcattgga 360  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  28000300 acacttcaatgatgatcatcaaaaccacactcagattcatcttcaacttccagcattgga 28000359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 413
Target Start/End: Original strand, 27910978 - 27911375
Alignment:
Q  16 catatgggaacgtgctcaatgtctttcaataccatcacatatcttgtgcaatattaaagagattagactgaagaatatttcgaagatgaaatcagtattc 115  Q
    |||||||||||||| |||||||||||||| || |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27910978 catatgggaacgtgttcaatgtctttcaagacaatcacatatcttatgcaatattaaagagattacactgaagaatatttcgaagatgaaatcagtattc 27911077  T
Q  116 atcctatccattgctcgaagaatgttgctggagactttgacaatcagtaagtgtgatgagttgaagcacatcataatagacatgggagatcatgacaaca 215  Q
    |||||||| ||||||| | |||||||| |||||||||||||||| ||||||||||| || ||||||||||| ||||||||||| |  |||||||||||||    
T  27911078 atcctatcgattgctccaggaatgttgttggagactttgacaattagtaagtgtgacgaattgaagcacattataatagacattgatgatcatgacaaca 27911177  T
Q  216 atggtggcaataacttggtcaatgtcttcccaaaattaagagctgtcaatgttgaagattgtgagaaattggaatacataattggacacttcaatgatga 315  Q
     ||||||||||||||||  ||||||||||||||| ||||||  |||||| |||||||||||||||||||||||||||||||||||||||  || ||||||    
T  27911178 ctggtggcaataacttgaccaatgtcttcccaaatttaagaaatgtcaaagttgaagattgtgagaaattggaatacataattggacacgacactgatga 27911277  T
Q  316 tcatcaaaaccacactgagattcatcttcatcttccagcattggagatctttattcttcaaaatctaccatgtttagtcggaatgtgtcccaaacaat 413  Q
    |||||||||||||| |||||||||||||||||||  | ||||||||| |||| |||||   ||||| ||| ||||||||||||||| ||| |||||||    
T  27911278 tcatcaaaaccacattgagattcatcttcatcttttaacattggagacctttgttctttggaatctgccaagtttagtcggaatgtctccaaaacaat 27911375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 413
Target Start/End: Original strand, 28179018 - 28179415
Alignment:
Q  16 catatgggaacgtgctcaatgtctttcaataccatcacatatcttgtgcaatattaaagagattagactgaagaatatttcgaagatgaaatcagtattc 115  Q
    |||||||||| |||||||||||||||||| || ||||||||||||||||||||||||| |||||| |||   ||| ||||| |||||||||||||||||     
T  28179018 catatgggaaagtgctcaatgtctttcaagacaatcacatatcttgtgcaatattaaaaagattacactctggaaaatttcaaagatgaaatcagtattt 28179117  T
Q  116 atcctatccattgctcgaagaatgttgctggagactttgacaatcagtaagtgtgatgagttgaagcacatcataatagacatgggagatcatgacaaca 215  Q
    ||||| || ||||||| || ||||||| ||||| | |||||||||  ||||||| |||| ||||||||||| ||||||||||||||||||||||||||||    
T  28179118 atcctgtctattgctccaacaatgttgttggagtcattgacaatctataagtgtaatgaattgaagcacattataatagacatgggagatcatgacaaca 28179217  T
Q  216 atggtggcaataacttggtcaatgtcttcccaaaattaagagctgtcaatgttgaagattgtgagaaattggaatacataattggacacttcaatgatga 315  Q
     |||||||||||||| || || |||||||||||||||||||    || | |||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  28179218 ctggtggcaataactggggcactgtcttcccaaaattaagattgttcgaagttgaacattgtgagaaattggaatacataattggacacttcactgatga 28179317  T
Q  316 tcatcaaaaccacactgagattcatcttcatcttccagcattggagatctttattcttcaaaatctaccatgtttagtcggaatgtgtcccaaacaat 413  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||  ||||||| ||||| ||| |||||||| | ||||||||||||||||    
T  28179318 tcatcaaaaccacactgagattcctcttcatcttccagcattggagaccttcgttcttcacaatctgccaagtttagtcagcatgtgtcccaaacaat 28179415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 49 - 413
Target Start/End: Original strand, 28049158 - 28049522
Alignment:
Q  49 atcacatatcttgtgcaatattaaagagattagactgaagaatatttcgaagatgaaatcagtattcatcctatccattgctcgaagaatgttgctggag 148  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||   ||||||||| |||||    
T  28049158 atcacatatcttgtgcaatattaaagagattacactgaagaatatttcgaagatgaaatcagtattcatcctatctattgcttctagaatgttgttggag 28049257  T
Q  149 actttgacaatcagtaagtgtgatgagttgaagcacatcataatagacatgggagatcatgacaacaatggtggcaataacttggtcaatgtcttcccaa 248  Q
    || |||| ||| || ||||||||||| ||||||||||| ||||||||||| |  ||||||||||||| ||||| || ||||| || || |||||||||||    
T  28049258 accttgagaattagcaagtgtgatgaattgaagcacataataatagacattgatgatcatgacaacactggtgccattaactcgggcactgtcttcccaa 28049357  T
Q  249 aattaagagctgtcaatgttgaagattgtgagaaattggaatacataattggacacttcaatgatgatcatcaaaaccacactgagattcatcttcatct 348  Q
    | ||||||  |||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  28049358 atttaagaaatgtcacagttgaagattgtgagaaattggaatacataattggacacttcactgatgatcatcaaaaccacactcagattcatcttcatct 28049457  T
Q  349 tccagcattggagatctttattcttcaaaatctaccatgtttagtcggaatgtgtcccaaacaat 413  Q
    ||||| |||||||| |||  ||||||  ||||| ||| |||||||||| ||||||||||||||||    
T  28049458 tccagtattggagaccttcgttcttcgcaatctgccaagtttagtcggcatgtgtcccaaacaat 28049522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 16 - 360
Target Start/End: Original strand, 28080864 - 28081205
Alignment:
Q  16 catatgggaacgtgctcaatgtctttcaataccatcacatatcttgtgcaatattaaagagattagactgaagaatatttcgaagatgaaatcagtattc 115  Q
    |||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  28080864 catatgggaacgtgctcaatttctttcaataccatcaaatatcttgtggaatattaaagagattacactgatgaatatttcgaagatgaaatcagtattc 28080963  T
Q  116 atcctatccattgctcgaagaatgttgctggagactttgacaatcagtaagtgtgatgagttgaagcacatcataatagacatgggagatcatgacaaca 215  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||  ||| |||||   ||||    
T  28080964 atcctatccattgctccaagaatgttgttggagactttgacaatcagtaagtgtgatgaattgaagcacattataatagacacaggatatcat---aaca 28081060  T
Q  216 atggtggcaataacttggtcaatgtcttcccaaaattaagagctgtcaatgttgaagattgtgagaaattggaatacataattggacacttcaatgatga 315  Q
     |||||||||||||| || || ||||||||| || ||||||  |||  | |||| |||||||||| || ||||||||||||||||||| | || ||||||    
T  28081061 ctggtggcaataactggggcactgtcttccctaatttaagaagtgttgaagttggagattgtgagcaactggaatacataattggacaatacactgatga 28081160  T
Q  316 tcatcaaaaccacactgagattcatcttcatcttccagcattgga 360  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  28081161 tcatcaaaaccacactgagattcatcttcgtcttccagcattgga 28081205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 16 - 360
Target Start/End: Original strand, 11409945 - 11410289
Alignment:
Q  16 catatgggaacgtgctcaatgtctttcaataccatcacatatcttgtgcaatattaaagagattagactgaagaatatttcgaagatgaaatcagtattc 115  Q
    |||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||| ||||||    
T  11409945 catatgggaacgtgctcaatgtcttttaagaccatcagatatcttgtgcaatattaaagagattacactgaggaatattttgaagatgagatcggtattc 11410044  T
Q  116 atcctatccattgctcgaagaatgttgctggagactttgacaatcagtaagtgtgatgagttgaagcacatcataatagacatgggagatcatgacaaca 215  Q
    |||||||| ||||||| || ||||||| |||| ||||||||||| || || |||||||| || |||||||| || |||||||  |||||||||||||||     
T  11410045 atcctatctattgctccaaaaatgttgttggaaactttgacaattaggaactgtgatgaattaaagcacattattatagacaccggagatcatgacaact 11410144  T
Q  216 atggtggcaataacttggtcaatgtcttcccaaaattaagagctgtcaatgttgaagattgtgagaaattggaatacataattggacacttcaatgatga 315  Q
     ||||| |||||||| || || |||||||||||| ||||||    |  | |||||||||||||||  ||||||| ||||||||||||||| || |||||     
T  11410145 ctggtgccaataactggggcactgtcttcccaaatttaagaaagattgaagttgaagattgtgagcgattggaagacataattggacactacactgatgg 11410244  T
Q  316 tcatcaaaaccacactgagattcatcttcatcttccagcattgga 360  Q
    |||||||||||||  ||||||||| ||||||||||||| ||||||    
T  11410245 tcatcaaaaccacgttgagattcaccttcatcttccagtattgga 11410289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 16 - 351
Target Start/End: Original strand, 27972778 - 27973110
Alignment:
Q  16 catatgggaacgtgctcaatgtctttcaataccatcacatatcttgtgcaatattaaagagattagactgaagaatatttcgaagatgaaatcagtattc 115  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| | |||   ||||||||||||||||||| ||||||    
T  27972778 catatgggaacgtgctcaatgtctttcaagacaatcacatatcttgtgcaatattaaagagattaaattgagagatatttcgaagatgaaatccgtattc 27972877  T
Q  116 atcctatccattgctcgaagaatgttgctggagactttgacaatcagtaagtgtgatgagttgaagcacatcataatagacatgggagatcatgacaaca 215  Q
    |||||||| ||||||| |||||||||| ||||||||||    || |  || |||||||| || ||| |||| ||||||||||  |  |||||||||||||    
T  27972878 atcctatctattgctccaagaatgttgttggagactttatggattatcaattgtgatgaattaaagtacataataatagacactgatgatcatgacaaca 27972977  T
Q  216 atggtggcaataacttggtcaatgtcttcccaaaattaagagctgtcaatgttgaagattgtgagaaattggaatacataattggacacttcaatgatga 315  Q
    |   |||||||||||||  |||||||||||||||||||| ||   || | ||||  ||||| | | |||||||||| ||| ||||||||| || ||||||    
T  27972978 a---tggcaataacttgtgcaatgtcttcccaaaattaaaagagctctacgttggtgattgcgtgcaattggaatagatatttggacactacactgatga 27973074  T
Q  316 tcatcaaaaccacactgagattcatcttcatcttcc 351  Q
     | | ||||| | | ||||||||| |||||||||||    
T  27973075 ccgtgaaaacgagaatgagattcaccttcatcttcc 27973110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 16 - 324
Target Start/End: Complemental strand, 27463190 - 27462885
Alignment:
Q  16 catatgggaacgtgctcaatgtctttcaataccatcacatatcttgtgcaatattaaagagattagactgaagaatatttcgaagatgaaatcagtattc 115  Q
    ||||||||||||||||||||||||||||| || |||||||||| ||| |||||||||||||||||| |||    ||||||| ||||||||||| |||||     
T  27463190 catatgggaacgtgctcaatgtctttcaagacaatcacatatcctgtacaatattaaagagattaggctgggatatatttcaaagatgaaatctgtattt 27463091  T
Q  116 atcctatccattgctcgaagaatgttgctggagactttgacaatcagtaagtgtgatgagttgaagcacatcataatagacatgggagatcatgacaaca 215  Q
    |||||||| | ||||| |||||||||| ||||||||||    || || || |||||||| ||||||||||| ||| ||||||  |||||  |||   |||    
T  27463090 atcctatctactgctccaagaatgttgttggagactttatgtattagcaactgtgatgaattgaagcacataatagtagacacaggagaaaatg---aca 27462994  T
Q  216 atggtggcaataacttggtcaatgtcttcccaaaattaagagctgtcaatgttgaagattgtgagaaattggaatacataattggacacttcaatgatga 315  Q
     ||||||||||||||||| ||||||||| |||||||||| |  | |  |  ||| ||||||||||||||||||||||||| ||||||||| || | ||||    
T  27462993 gtggtggcaataacttgggcaatgtctttccaaaattaaaatatctatacattggagattgtgagaaattggaatacatacttggacactacactcatga 27462894  T
Q  316 tcatcaaaa 324  Q
    |||||||||    
T  27462893 tcatcaaaa 27462885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 16 - 360
Target Start/End: Complemental strand, 28512374 - 28512024
Alignment:
Q  16 catatgggaacgtgctcaatgtctttcaataccatcacatatcttgtgcaatattaaagagattagactgaagaatatttcgaagatgaaatcagtattc 115  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||||| ||| |||||||| | |||  ||| | || |||||||||||  ||||     
T  28512374 catatgggaacgtgctcaatgtctttcaagacaatcacatatcttgtgcaatgttacagagattacattgagcaatgtctcaaagatgaaatcgttattt 28512275  T
Q  116 atcctatccattgctcgaagaatgttgctggagactttgacaatcagtaagtgtgatgagttgaagcacatcat---aatagacatgggagatcat---g 209  Q
    | |||||| | ||||| |||||||||  |||| |||||||  ||  | || ||| |||| | || |||||| ||   ||||||||| |||||||||   |    
T  28512274 aacctatctactgctccaagaatgttattggaaactttgaatatttggaactgtaatgaatggaggcacattataacaatagacattggagatcatcacg 28512175  T
Q  210 acaacaatggtggcaataacttggtcaatgtcttcccaaaattaagagctgtcaatgttgaagattgtgagaaattggaatacataattggacacttcaa 309  Q
    |||||| || ||||||||||| || || |||||||||||||||||||    ||  |||| |  |||| | | |||||||||| ||||||||||||| |||    
T  28512174 acaacactgatggcaataactggggcactgtcttcccaaaattaagaaagctctctgtttataattgcgcgcaattggaatatataattggacactacaa 28512075  T
Q  310 tgatgatcatcaaaaccacactgagattcatcttcatcttccagcattgga 360  Q
     ||||||||||||||| ||||| ||||||||||||||||||||| ||||||    
T  28512074 cgatgatcatcaaaacaacactaagattcatcttcatcttccagaattgga 28512024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 16 - 360
Target Start/End: Complemental strand, 28471328 - 28470978
Alignment:
Q  16 catatgggaacgtgctcaatgtctttcaataccatcacatatcttgtgcaatattaaagagattagactgaagaatatttcgaagatgaaatcagtattc 115  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||||| ||| |||||||| | |||  ||| | || |||||||||||  ||||     
T  28471328 catatgggaacgtgctcaatgtctttcaagacaatcacatatcttgtgcaatgttacagagattacattgagcaatgtctcaaagatgaaatcgttattt 28471229  T
Q  116 atcctatccattgctcgaagaatgttgctggagactttgacaatcagtaagtgtgatgagttgaagcacatcataa---tagacatgggagatcat---g 209  Q
    | |||||| | ||||| |||||||||  |||| |||||||  ||  | || ||| |||| | || |||||| ||||   ||||||  |||||||||   |    
T  28471228 aacctatctactgctccaagaatgttattggaaactttgaatatttggaactgtaatgaatggaggcacattataacaatagacaatggagatcatcaag 28471129  T
Q  210 acaacaatggtggcaataacttggtcaatgtcttcccaaaattaagagctgtcaatgttgaagattgtgagaaattggaatacataattggacacttcaa 309  Q
    |||||| || ||||||||||| ||  | |||||||||||||||||||    |||||||| |  |||| | | |||||||||| ||||||||||||| |||    
T  28471128 acaacactgatggcaataactggggaactgtcttcccaaaattaagaaagctcaatgtttataattgcgcgcaattggaatatataattggacactacaa 28471029  T
Q  310 tgatgatcatcaaaaccacactgagattcatcttcatcttccagcattgga 360  Q
     |||| |||||||||| ||||| ||||||||||||||||||||| ||||||    
T  28471028 cgatggtcatcaaaacaacactaagattcatcttcatcttccagaattgga 28470978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 167 - 357
Target Start/End: Original strand, 26626757 - 26626944
Alignment:
Q  167 tgtgatgagttgaagcacatcataatagacatgggagatcatgacaacaatggtggcaataacttggtcaatgtcttcccaaaattaagagctgtcaatg 266  Q
    |||||||| ||||||||||| ||||||||||  |||||||||| ||    || ||||||||  | || |||||||||||||||||||||| || | |  |    
T  26626757 tgtgatgaattgaagcacataataatagacaccggagatcatggcag---tgatggcaatagttggggcaatgtcttcccaaaattaagatctctaacag 26626853  T
Q  267 ttgaagattgtgagaaattggaatacataattggacacttcaatgatgatcatcaaaaccacactgagattcatcttcatcttccagcatt 357  Q
    ||||  |||||| | |||||||||||||| ||| ||||  || | |||||||||||||||||||||||||||| ||||| |||||||||||    
T  26626854 ttgataattgtgtgcaattggaatacatatttgaacacgacattcatgatcatcaaaaccacactgagattcaccttcaacttccagcatt 26626944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 282 - 360
Target Start/End: Complemental strand, 28483288 - 28483210
Alignment:
Q  282 aattggaatacataattggacacttcaatgatgatcatcaaaaccacactgagattcatcttcatcttccagcattgga 360  Q
    |||||||||| ||||||||||||| ||| |||| |||||||||| ||||| ||||||||||||||||||||||||||||    
T  28483288 aattggaatatataattggacactacaacgatggtcatcaaaacaacactaagattcatcttcatcttccagcattgga 28483210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 17747714 - 17747610
Alignment:
Q  16 catatgggaacgtgctcaatgtctttcaataccatcacatatcttgtgcaatattaaagagattagactgaagaatatttcgaagatgaaatcagtattc 115  Q
    ||||||||||||||||||||||||||||| |||| |||   ||||||||||| || ||||||||| | |||||||| |||| ||||||||||| |||||     
T  17747714 catatgggaacgtgctcaatgtctttcaagaccagcac---tcttgtgcaatgttgaagagattacattgaagaatgtttcaaagatgaaatcggtattt 17747618  T
Q  116 atcctatc 123  Q
    ||||||||    
T  17747617 atcctatc 17747610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 19049034 - 19048930
Alignment:
Q  16 catatgggaacgtgctcaatgtctttcaataccatcacatatcttgtgcaatattaaagagattagactgaagaatatttcgaagatgaaatcagtattc 115  Q
    ||||||||||||||||||||||||||||| |||| |||   ||||||||||| || ||||||||| | |||||||| |||| ||||||||||| |||||     
T  19049034 catatgggaacgtgctcaatgtctttcaagaccagcac---tcttgtgcaatgttgaagagattacattgaagaatgtttcaaagatgaaatcggtattt 19048938  T
Q  116 atcctatc 123  Q
    ||||||||    
T  19048937 atcctatc 19048930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 320
Target Start/End: Complemental strand, 26211444 - 26211143
Alignment:
Q  16 catatgggaacgtgctcaatgtctttcaataccatcacatatcttgtgcaatattaaagagattagactgaagaatatttcgaagatgaaatcagtattc 115  Q
    |||||||||||||||||||||||||  || || |||||||||| ||||||||| ||||||||||  | |    ||| || ||||||| ||||| |||||     
T  26211444 catatgggaacgtgctcaatgtcttctaagacaatcacatatcctgtgcaatactaaagagattgaaatctgtaattttccgaagattaaatctgtattt 26211345  T
Q  116 atcctatccattgctcgaagaatgttgctggagactttgacaatcagtaagtgtgatgagttgaagcacatcataatagacatgggagatcatgacaaca 215  Q
    |||| ||| ||||||| ||||||||   |||| ||||| | |||     | ||||| || |||||||| || ||||||||||  ||||||||| |||  |    
T  26211344 atccaatctattgctccaagaatgt---tggaaactttaataattttgcactgtgaagaattgaagcaaataataatagacactggagatcataacagta 26211248  T
Q  216 atggtggcaataacttggtcaatgtcttcccaaaattaagagctgtcaatgttgaagattgtgagaaattggaatacataattggacacttcaatgatga 315  Q
     | |||||||||| || | |||||||||||||||||| | | |  |    |||| | |||||| | |||||||||||||| ||||||||| |||| ||||    
T  26211247 ctagtggcaataattttggcaatgtcttcccaaaattgaaaacgctttgggttgtaaattgtgtgcaattggaatacatatttggacactacaatcatga 26211148  T
Q  316 tcatc 320  Q
    |||||    
T  26211147 tcatc 26211143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 98 - 333
Target Start/End: Complemental strand, 26181657 - 26181425
Alignment:
Q  98 aagatgaaatcagtattcatcctatccattgctcgaagaatgttgctggagactttgacaatcagtaagtgtgatgagttgaagcacatcataatagaca 197  Q
    ||||||||||| ||||| |||||||||||| ||| ||||||||||   || | ||||| |||    || ||||||||  ||||||| || ||||||||||    
T  26181657 aagatgaaatctgtattgatcctatccattcctctaagaatgttg---gaaagtttgagaattgagaaatgtgatgaaatgaagcaaataataatagaca 26181561  T
Q  198 tgggagatcatgacaacaatggtggcaataacttggtcaatgtcttcccaaaattaagagctgtcaatgttgaagattgtgagaaattggaatacataat 297  Q
      ||||||||| |||  | | |||||||||| || |  ||||||||||||||||| | |    ||   |||||| |||||| | |||||||||||||| |    
T  26181560 ctggagatcataacagtactagtggcaataaatttggtaatgtcttcccaaaattgaaaaggctctgggttgaaaattgtgtgcaattggaatacatatt 26181461  T
Q  298 tggacacttcaatgatgatcatcaaaaccacactga 333  Q
    |||||||| |||| |||||||||||||||| |||||    
T  26181460 tggacactacaatcatgatcatcaaaaccagactga 26181425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 18029753 - 18029697
Alignment:
Q  18 tatgggaacgtgctcaatgtctttcaataccatcacatatcttgtgcaatattaaag 74  Q
    ||||||||||||||||||||||||||| || |||||||||| ||||||| |||||||    
T  18029753 tatgggaacgtgctcaatgtctttcaagactatcacatatcatgtgcaaaattaaag 18029697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 198
Target Start/End: Complemental strand, 27434288 - 27434099
Alignment:
Q  9 gtcttcccatatgggaacgtgctcaatgtctttcaataccatcacatatcttgtgcaatattaaagagattagactgaagaatatttcgaagatgaaatc 108  Q
    |||||| ||||||||||  || || ||||||| |||||| |||| ||| |||||||||| ||||||||||||  |||    || ||| |  ||| || ||    
T  27434288 gtcttctcatatgggaatatgttccatgtcttccaatacaatcatatagcttgtgcaatgttaaagagattaatctgtctcattttttggcgataaagtc 27434189  T
Q  109 agtattcatcctatccattgctcgaagaatgttgctggagactttgacaatcagtaagtgtgatgagttgaagcacatcataatagacat 198  Q
     || || || ||||| ||| | | |||||||||| |||| ||||||||||| |  || ||||||||||||||| |||| |||||||||||    
T  27434188 ggtgtttattctatctattacaccaagaatgttgttggaaactttgacaattaagaactgtgatgagttgaagaacataataatagacat 27434099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 299
Target Start/End: Complemental strand, 17747508 - 17747428
Alignment:
Q  219 gtggcaataacttggtcaatgtcttcccaaaattaagagctgtcaatgttgaagattgtgagaaattggaatacataattg 299  Q
    ||||||| |||| || || ||||||||||||||||| |  |||  | ||||||||||||||| ||||||||||||||||||    
T  17747508 gtggcaacaactggggcactgtcttcccaaaattaacacatgttgaagttgaagattgtgagcaattggaatacataattg 17747428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 299
Target Start/End: Complemental strand, 19048828 - 19048748
Alignment:
Q  219 gtggcaataacttggtcaatgtcttcccaaaattaagagctgtcaatgttgaagattgtgagaaattggaatacataattg 299  Q
    ||||||| |||| || || ||||||||||||||||| |  |||  | ||||||||||||||| ||||||||||||||||||    
T  19048828 gtggcaacaactggggcactgtcttcccaaaattaacacatgttgaagttgaagattgtgagcaattggaatacataattg 19048748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 320
Target Start/End: Complemental strand, 26238607 - 26238386
Alignment:
Q  96 cgaagatgaaatcagtattcatcctatccattgctcgaagaatgttgctggagactttgacaatcagtaagtgtgatgagttgaagcacatcataataga 195  Q
    ||||||||||||| ||||| ||| |||||| ||||  ||||||||||   || || || |||||    || |||||||| |||||||| || ||||||||    
T  26238607 cgaagatgaaatctgtatttatcgtatccagtgctttaagaatgttg---gaaaccttcacaattgagaaatgtgatgaattgaagcaaataataataga 26238511  T
Q  196 catgggagatcatgacaacaatggtggcaataacttggtcaatgtcttcccaaaattaagagctgtcaatgttgaagattgtgagaaattggaatacata 295  Q
    ||  ||||||||| | |  | | |||||||||| || | |||||||||||||||||| | | |  |    |||| | |||||| | ||||||||||||||    
T  26238510 cactggagatcataatagtactagtggcaataattttggcaatgtcttcccaaaattgaaaacgctttgggttgtaaattgtgtgcaattggaatacata 26238411  T
Q  296 attggacacttcaatgatgatcatc 320  Q
     ||||||||| |||| |||||||||    
T  26238410 tttggacactacaatcatgatcatc 26238386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 300
Target Start/End: Complemental strand, 18714110 - 18714045
Alignment:
Q  235 caatgtcttcccaaaattaagagctgtcaatgttgaagattgtgagaaattggaatacataattgg 300  Q
    |||||||||||||||||||| ||   || | ||||| |||||||||||||||||||||||| ||||    
T  18714110 caatgtcttcccaaaattaaaagagctcgacgttgatgattgtgagaaattggaatacatatttgg 18714045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 28491369 - 28491328
Alignment:
Q  16 catatgggaacgtgctcaatgtctttcaataccatcacatat 57  Q
    ||||||||||||||||||||||||||||| || |||||||||    
T  28491369 catatgggaacgtgctcaatgtctttcaagacaatcacatat 28491328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 26134238 - 26134177
Alignment:
Q  18 tatgggaacgtgctcaatgtctttcaataccatcacatatcttgtgcaatattaaagagatt 79  Q
    ||||||||||| || ||||| ||| || ||  ||||||||| ||||||||||||||||||||    
T  26134238 tatgggaacgtcctgaatgtgttttaagacagtcacatatcatgtgcaatattaaagagatt 26134177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 18080234 - 18080186
Alignment:
Q  1 ttcatactgtcttcccatatgggaacgtgctcaatgtctttcaatacca 49  Q
    |||||||||||||  ||||||||||| ||||||||| ||||||| ||||    
T  18080234 ttcatactgtcttaacatatgggaacatgctcaatggctttcaagacca 18080186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 252
Target Start/End: Complemental strand, 26134068 - 26134004
Alignment:
Q  188 ataatagacatgggagatcatgacaacaatggtggcaataacttggtcaatgtcttcccaaaatt 252  Q
    ||||||||||  ||||||||| | || | |||||||||||| || | ||||||||||||||||||    
T  26134068 ataatagacactggagatcataaaaatactggtggcaataattttggcaatgtcttcccaaaatt 26134004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 197
Target Start/End: Original strand, 24549 - 24726
Alignment:
Q  20 tgggaacgtgctcaatgtctttcaataccatcacatatcttgtgcaatattaaagagattagactgaagaatatttcgaagatgaaatcagtattcatcc 119  Q
    |||||||||| |||||||||| |||||| |||| | |   ||||||||||||||||||||  | ||    |||||| |||||| |||||||| || ||||    
T  24549 tgggaacgtgttcaatgtcttccaatacaatcatacagaatgtgcaatattaaagagattgtattgtgtcatattttgaagataaaatcagtgtttatcc 24648  T
Q  120 tatccattgctcgaagaatgttgctggagactttgacaatcagtaagtgtgatgagttgaagcacatcataatagaca 197  Q
    |||| ||| | | || ||||||| |||| ||||||||||| |  || ||||||||||| ||| |||| ||| ||||||    
T  24649 tatcaattacaccaaaaatgttgttggaaactttgacaattaagaactgtgatgagttaaagaacataatattagaca 24726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 71034 - 70977
Alignment:
Q  18 tatgggaacgtgctcaatgtctttcaataccatcacatatcttgtgcaatattaaagagat 78  Q
    |||||||||||||||||||||||||||    |||||||||| |||||||||||||| ||||    
T  71034 tatgggaacgtgctcaatgtctttcaa---aatcacatatcatgtgcaatattaaaaagat 70977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1236 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold1236
Description:

Target: scaffold1236; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 300
Target Start/End: Original strand, 1934 - 1999
Alignment:
Q  235 caatgtcttcccaaaattaagagctgtcaatgttgaagattgtgagaaattggaatacataattgg 300  Q
    |||||||||||||||||||| |    |||| ||||| |||||||||||||||||||||||| ||||    
T  1934 caatgtcttcccaaaattaaaaaagctcaaagttgatgattgtgagaaattggaatacatatttgg 1999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0836 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0836
Description:

Target: scaffold0836; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 300
Target Start/End: Complemental strand, 4671 - 4607
Alignment:
Q  236 aatgtcttcccaaaattaagagctgtcaatgttgaagattgtgagaaattggaatacataattgg 300  Q
    ||||||||||||||||||| ||   |||| |||||  ||||||||||||||||||||||| ||||    
T  4671 aatgtcttcccaaaattaaaagagctcaacgttgatcattgtgagaaattggaatacatatttgg 4607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0836; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 44
Target Start/End: Complemental strand, 4888 - 4860
Alignment:
Q  16 catatgggaacgtgctcaatgtctttcaa 44  Q
    |||||||||||||||||||||||||||||    
T  4888 catatgggaacgtgctcaatgtctttcaa 4860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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