View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19391_low_6 (Length: 424)
Name: NF19391_low_6
Description: NF19391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19391_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 13 - 405
Target Start/End: Complemental strand, 33184348 - 33183956
Alignment:
| Q |
13 |
atgattcgtttctatagagatatgagtgaaactcatatcatcacaataagggagcttctaagattcatgctcactgtcaagtcccgtagaccagtgtcaa |
112 |
Q |
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| T |
33184348 |
atgattcgtttctatagagatatgagtgaaactcatatcatcacaataagagagcttctaagattcatgctcactatcaagtcccgtagaccagtgtcaa |
33184249 |
T |
|
| Q |
113 |
aaatgacagtcacttgttcttctcctaatgctgtttctgatactgattcaccttcttgttctacttcagcatttatgtccagaaatgcatccaaacctgt |
212 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33184248 |
aaatgacagtcactttttcttctcctaatgctgtttctgatactgattcaccttcttgttctacttcagcatttatgtccagaaatgcatccaaacctgt |
33184149 |
T |
|
| Q |
213 |
actttcaagtagcagatcaaatttcacaatgaaggaaaaatcagctaggtataagaaattcagcactgcagtagctaacatggatagtaggtggccaaca |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33184148 |
actttcaagtagcagatcaaatttcacaatgaaggaaaaatcagctaggtataagaaattcagcactgcagtagctaacatggatagtaggtggccaaca |
33184049 |
T |
|
| Q |
313 |
aggagactagagtttgcagctcaagtgattgtggaagcattaaaagaggataaagctatgaaaccaggctctagtggaatgacaagacaagat |
405 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33184048 |
aggagattagagtttgcagctcaagtgattgtggaagcattaaaagaggataaagctatgaaaccaggctctagtggaatgacaagacaagat |
33183956 |
T |
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