View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19391_low_7 (Length: 387)
Name: NF19391_low_7
Description: NF19391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19391_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 10554356 - 10553988
Alignment:
| Q |
1 |
ctcggatttgagctagtttccattggtgtgcttcaaggattgcagctcaacatgttgannnnnnnagtatctcagttatggaaaccccatatccaaaccg |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
10554356 |
ctcggatttgagctagtttccatt----tgcttcaaggattgcagctcaacatgttgatttttttagtatctcagttatggaaaccccatatccaaaccg |
10554261 |
T |
|
| Q |
101 |
atatttgctcctcaggtatacaagatgaaccagctccacattcatac-----agccatggcaagagactacacccaacatccttgtagactaacaaggat |
195 |
Q |
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|||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10554260 |
atatttcctcctcaggtatacaagatgatccagctccacattcatactctagagccatggcaagagactacacccaacatccttgtagactaacaaggat |
10554161 |
T |
|
| Q |
196 |
cacatcacgatagagaatatttataaagacattaaagcacatcaatagtagcgacatgggagtaacccccgagtcaaagatccataaagaagagaaccct |
295 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10554160 |
cacatcacgatagagaatatatataaagacattaaagcacatcaatagtagcgacatgggagtaacccccgagtcaaagatccataaagaagagaaccct |
10554061 |
T |
|
| Q |
296 |
aatcatctctttctcttatctcctatatatagaaatctcaagctaacccttattcattcactttttcccccagaataat |
374 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
10554060 |
aatcatc------tcttatctcctatatatagaaatctcaagctaacccttattcattcactttttcccccaaaataat |
10553988 |
T |
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