View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19391_low_8 (Length: 384)
Name: NF19391_low_8
Description: NF19391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19391_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 74 - 372
Target Start/End: Original strand, 47865355 - 47865653
Alignment:
| Q |
74 |
ttaaaagttttacttaacgtgaaaacatctaataatattccctagataagttccaggttcttcaccagcactaatgatcttcttcactaacccttcatta |
173 |
Q |
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| T |
47865355 |
ttaaaagttttacttaacgtgaaaacatctaataatattccctagataagttccaggttcttcaccagcactaatgatcttcttcactaacccttcatta |
47865454 |
T |
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| Q |
174 |
tcactcaaactccactgtgcgaaaacagcagtccttgaccaaaatcatagtcttgtacaaagcataaccctcagcttcttctggttgaacaaagtcatcc |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47865455 |
tcactcaaactccactgtgcgaaaacagcagtccttgaccaaaatcatagtcttgtacaaagcataaccctcagcttcttctggttgaacaaagtcatcc |
47865554 |
T |
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| Q |
274 |
ctctttcaggttgtcgttgctaaaacatgtccatcttcatcttagaaaaccgcacccaacccccaggtattttcctgttgcaaatttgcatccgagtat |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
47865555 |
ctctttcaggttgtcgttgctaaaacatgtccatcttcatcttagaaaaccgcacccaacccccaggtattttcctgttgcaaatttgcatctgagtat |
47865653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 47864423 - 47864488
Alignment:
| Q |
17 |
ccaactcatgggccaccaaatttcattgtctcttggtaaaagaggaaatcacacttattaaaagtt |
82 |
Q |
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| T |
47864423 |
ccaactcatgggccaccaaatttcattgtctcttggtaaaagaggaaatcacacttattaaaagtt |
47864488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 17 - 372
Target Start/End: Complemental strand, 19470020 - 19469665
Alignment:
| Q |
17 |
ccaactcatgggccaccaaatttcattgtctcttggtaaaagaggaaatcacacttattaaaagttttacttaacgtgaaaacatctaataatattccct |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||| || |
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| T |
19470020 |
ccaactcatgggccaccaaatttcattgtctcttggtaaaagaggaaagcacacttgttaaaagttttacttaacctgaaaacatctaataatattctct |
19469921 |
T |
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| Q |
117 |
agataagttccaggttcttcaccagcactaatgatcttcttcactaacccttcattatcactcaaactccactgtgcgaaaacagcagtccttgaccaaa |
216 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
19469920 |
agataagttccaggttcttcagcagcactaatgatcttcttcactaacccttcattatcactgaaattccactgtgcgaaaacagcagtccttgaccaaa |
19469821 |
T |
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| Q |
217 |
atcatagtcttgtacaaagcataaccctcagcttcttctggttgaacaaagtcatccctctttcaggttgtcgttgctaaaacatgtccatcttcatctt |
316 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
19469820 |
atcatagtcttatacaaagcataaccctcagcttcttctggttgaacaaagtcatccctcttccaggttgttgttgctaaaacatgtccatcttcatctc |
19469721 |
T |
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| Q |
317 |
agaaaaccgcacccaacccccaggtattttcctgttgcaaatttgcatccgagtat |
372 |
Q |
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|||||||| |||||||||||||||||||||||| ||| | ||||||||| |||||| |
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| T |
19469720 |
agaaaaccacacccaacccccaggtattttcctattgtagatttgcatctgagtat |
19469665 |
T |
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