View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19392_low_1 (Length: 615)
Name: NF19392_low_1
Description: NF19392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19392_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-126; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 25 - 421
Target Start/End: Complemental strand, 15581271 - 15580894
Alignment:
| Q |
25 |
ttatctagcacactgtttcaacctaatatttacttacataccaaaatgagttcaagaaataatcataacaatttgggatattcacaaaaaccttcagata |
124 |
Q |
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| T |
15581271 |
ttatctagcacattgtttcaaccaaatatt-atttacataccaaaatgagttcaagaaataatcataataatttgggatattcacaaa------------ |
15581185 |
T |
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| Q |
125 |
agaaggaaaaaccttcagataagaaggattcgagagatcctactaagaaaagtccaatctcaaaccagaaggagttggcctacaataatggtcctcgtcc |
224 |
Q |
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| T |
15581184 |
---------aaccttcagataagaaggattcgagagatcctactaagaaaagtccaatctcaaaccagattgatatggcctacaacaatggtcctcctcc |
15581094 |
T |
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| Q |
225 |
tattgcaaatactgaaaatcgtcctgtaaatcagaatcctttggctaaccaaatggat---ggttacaacacttgatatggccaacatgcaggtatattg |
321 |
Q |
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| T |
15581093 |
tgtggcaaatactggaaatcttcctgcaaatcagaatcctttggctaaccaaatgaatattggttacaacacttgatatggccaacatgcaggtatattg |
15580994 |
T |
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| Q |
322 |
agaaactaggattgtatttgaattttcttacaaagagtaacaaattaataagtctcattaaatcttctaatctcctaatttctttacttatctcatttgt |
421 |
Q |
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| T |
15580993 |
agaaactaggattgtatttgaattttcttacaaacagtaacaaattaatatgtctcattaaatcttttaatctcctaatttcattacttatctcatttgt |
15580894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 10 - 131
Target Start/End: Complemental strand, 15549888 - 15549767
Alignment:
| Q |
10 |
tcgaagaatatactattatctagcacactgtttcaacctaatatttacttacataccaaaatgagttcaagaaataatcataacaatttgggatattcac |
109 |
Q |
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| T |
15549888 |
tcgaaaaatatactattatctagcacattgtttcaacctaatatttacttacataccaaaatgagttcaagaaataatcataataatttgggacattcac |
15549789 |
T |
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| Q |
110 |
aaaaaccttcagataagaagga |
131 |
Q |
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| T |
15549788 |
aaaaactttcagataagaagga |
15549767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 138 - 216
Target Start/End: Complemental strand, 15549781 - 15549703
Alignment:
| Q |
138 |
ttcagataagaaggattcgagagatcctactaagaaaagtccaatctcaaaccagaaggagttggcctacaataatggt |
216 |
Q |
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| T |
15549781 |
ttcagataagaaggattcgagagaccctgctaagaatagtccaatcttaaaccagaaggatttggcctacaacaatggt |
15549703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 429 - 506
Target Start/End: Complemental strand, 15580950 - 15580873
Alignment:
| Q |
429 |
attaataagtctctttaaatcttttaatgtgctgatttcattacttatctcatttgtgcattatagaattttcttagt |
506 |
Q |
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| T |
15580950 |
attaatatgtctcattaaatcttttaatctcctaatttcattacttatctcatttgtgtatcatagaattttcttagt |
15580873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 554 - 599
Target Start/End: Complemental strand, 15580843 - 15580798
Alignment:
| Q |
554 |
tagagacgtataagtttcgatttgtgtgctacgaaggaatgttatt |
599 |
Q |
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| T |
15580843 |
tagagacgtctaagtttcgatttttgtgctacgaaggaatgttatt |
15580798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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