View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19392_low_2 (Length: 422)
Name: NF19392_low_2
Description: NF19392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19392_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 16 - 403
Target Start/End: Original strand, 19856725 - 19857112
Alignment:
| Q |
16 |
atcaccaactatagcccttccttcagacattctcttcatcttatgctcctctattatctttccaacaaaagtattaacctttttcaccaaagctctacac |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
19856725 |
atcaccaactatagcccttccttcagacattctcttcatcttatgctcctctattatctttccaacaaaagtattaacctttgtcaccaaagctctacac |
19856824 |
T |
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| Q |
116 |
cttttcctaacaccctgcaaatccaaccaacccagaagaggaaaatgatcactccagttaaaaacacccaacagctcataaccttcactcaccaactcct |
215 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
19856825 |
cttttcttaacaccctgcaaatccaaccaacccagaagaggaaaatgatcactccagttaaaaacacccaacagctcatacccttcactcaccaactcct |
19856924 |
T |
|
| Q |
216 |
caagctcaaaaccatcaccatcaaagaaatcataacattttccaaacacagtcatcatcacattattaagtgaaccaaaatgaagaacttttttcacctc |
315 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19856925 |
caagctcaacaccatcaccatcaaagaaatcataacattttccaaacacagtcatcatcacattattaagtgaaccaaaatgaagaacttttttcacctc |
19857024 |
T |
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| Q |
316 |
aacactacccatatcacccatcaaaaacttaatcctctcaaccattttcaaaccaacctcactcctaaaaccttcaaacccattaatc |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19857025 |
aacactacccatatcacccatcaaaaacttaatcctctccaccattttcaaaccaacctcactcctaaaaccttcaaacccattaatc |
19857112 |
T |
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