View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19393_high_2 (Length: 470)
Name: NF19393_high_2
Description: NF19393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19393_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Complemental strand, 35257071 - 35256612
Alignment:
| Q |
1 |
tcatcaaatggataaaattttccattttcatctttattattatcatcatcatccttactaaagttcccaacataataacttccatcttgccatctaaaag |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35257071 |
tcatcaaatggataaaatttcccattttcatctttattattatcatcatcatccttactaaagttcccaacataataacttccatcttgccatctaaaag |
35256972 |
T |
|
| Q |
101 |
tcccatttccttttggcaaaccatcttcccaaatcccttcaaagctattaccattaggccnnnnnnntgaccctttaccccaaattatcccattcttcca |
200 |
Q |
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| T |
35256971 |
ttccatttccttttggcaaaccatcttcccaaatcccttcaaagctattaccattaggccaaaaaaatgatcctttaccccaaattatcccattcttcca |
35256872 |
T |
|
| Q |
201 |
ttcaccaatataatgactcatatctctccattcatacctcccttttccatcttgcacccctctcctccaatcaccttcataccaatcaccattcacataa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35256871 |
ttcaccaatataatgactcatatctctccattcatacctcccttttccatcttgcacccctctcctccaatcaccttcataccaatcaccattcacataa |
35256772 |
T |
|
| Q |
301 |
ctcttatacccatgaccatgttttaaattcatcacccattgtcccttatatgtctcaccattaatacccgtgtatgttcctacaccatccatgaaaccag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35256771 |
ctcttatacccatgaccatgttttaaattcatcacccattgtcctttatatgtctcaccattaatacccgtgtatgttcctacaccatccatgaaaccag |
35256672 |
T |
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| Q |
401 |
tcttgaattcgccttcatatgtagcgcctgaaggccaactgaatctaccttttccctttg |
460 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35256671 |
tcttgaattcgccttcatatgtagcgcctgaaggccaactgaatctaccttttccctttg |
35256612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 70 - 456
Target Start/End: Original strand, 19642734 - 19643120
Alignment:
| Q |
70 |
acataataacttccatcttgccatctaaaagtcccatttccttttggcaaaccatcttcccaaatcccttcaaagctattaccattaggccnnnnnnntg |
169 |
Q |
| |
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|||||| |||||||||| |||| | ||||| ||||| ||||| |||||||||||||||||| || ||| | ||||| |||||| || || |
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| T |
19642734 |
acataaaaacttccatcaccccatttgaaagttccattccctttaggcaaaccatcttcccaatagccatcatacctattcccattactccaaacaaatg |
19642833 |
T |
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| Q |
170 |
accctttaccccaaattatcccattcttccattcaccaatataatgactcatatctctccattcatacctcccttttccatcttgcacccctctcctcca |
269 |
Q |
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|||||||||||||||| |||||||| ||||||| |||||||||| || |||| |||| ||||| ||||||| |||||| |||| ||||| ||||| |
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| T |
19642834 |
accctttaccccaaatactcccattcctccattccccaatataatatttctcatctttccactcatatctcccttgtccatcctgcaaacctcttctcca |
19642933 |
T |
|
| Q |
270 |
atcaccttcataccaatcaccattcacataactcttatacccatgaccatgttttaaattcatcacccattgtcccttatatgtctcaccattaataccc |
369 |
Q |
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|| || |||||| ||| |||||| ||||||| | | |||||||||||||| |||||||||||||||||||| ||||| || || |||||| || |
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| T |
19642934 |
ttctccctcatacttatctccattcgaataactcgtctcaccatgaccatgtttcaaattcatcacccattgtcctttataagtatccccattagtagaa |
19643033 |
T |
|
| Q |
370 |
gtgtatgttcctacaccatccatgaaaccagtcttgaattcgccttcatatgtagcgcctgaaggccaactgaatctaccttttccc |
456 |
Q |
| |
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||||||| |||| |||||||| ||||| ||||||| || |||||||| | | |||||||||||| |||| || || |||||| |
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| T |
19643034 |
gtgtatgcacctattccatccatataaccactcttgaactccccttcataagctggccctgaaggccaagtgaaccttccctttccc |
19643120 |
T |
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