View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19393_high_3 (Length: 426)
Name: NF19393_high_3
Description: NF19393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19393_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 177 - 381
Target Start/End: Complemental strand, 7272491 - 7272287
Alignment:
| Q |
177 |
aagtagttaatcatagttatgtctaatatgtggtttgtcgagtttggtatgattattacacgtcattgtgtgtgaagagtgttttcattcacattgatag |
276 |
Q |
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| T |
7272491 |
aagtagttaattatagttatgtctaatatgtggtttgtcgagtttggtatgattattacacgtcattgtgtgtgaagagtgttttcattcacattgatag |
7272392 |
T |
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| Q |
277 |
agttagttacctaaaatcaggaaagttaattggtttacccaactcgggtaattacaattgcatatatatcaaaactataaacaacaaccattaagctcct |
376 |
Q |
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| T |
7272391 |
agttagttacctaaaatcaggaaagttgattggtttacccaactcgggtaattacaattgcatatatatcaaaactataaacaagaaccattaagctcct |
7272292 |
T |
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| Q |
377 |
atagg |
381 |
Q |
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||||| |
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| T |
7272291 |
atagg |
7272287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 14 - 127
Target Start/End: Complemental strand, 7272690 - 7272577
Alignment:
| Q |
14 |
aaattaggaaagtggcttggattgaggagtaaatttaggcaaggggttattgttgaaaatgaaatttaatactcctatactgtcattagtgcagcttgga |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
7272690 |
aaattaggaaagtggcttggattgaggagtaaatttaggcaaggggttattgttgaaaatgaaatttaatactcctatactgtcattagtgcagcttcga |
7272591 |
T |
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| Q |
114 |
actgatccctcctc |
127 |
Q |
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|||||||||||||| |
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| T |
7272590 |
actgatccctcctc |
7272577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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