View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19393_low_1 (Length: 586)
Name: NF19393_low_1
Description: NF19393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19393_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 557; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 1 - 569
Target Start/End: Original strand, 34186423 - 34186991
Alignment:
| Q |
1 |
tgagatgaaaacattggaggagttgaagctgaaggatttgaaggcaaaaaattatctctttcaagcaattgatcgagctgtgcttgaaacaattctgaat |
100 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34186423 |
tgagaagaaaacattggaggagttgaagctgaaggatttgaaggcaaaaaattatctctttcaagcaattgatcgagctgtgcttgaaacaattctgaat |
34186522 |
T |
|
| Q |
101 |
aaggggacgtcgaaggagatttgggattctttaaagaagaaataccaagggactgctagagtgaagagagcacagcttcaggccttaagacgcgattggg |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34186523 |
aaggggacgtcgaaggagatttgggattctttaaagaagaaataccaagggactgctagagtgaagagagcacagcttcaggccttaagacgcgattggg |
34186622 |
T |
|
| Q |
201 |
aaattttgtcgatgaaaagtggagaatctgttaacgactactttgctcgtaccctcacaattgcaaataagatgagaatgtatggtgaacaaatggcgga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34186623 |
aaattttgtcgatgaaaagtggagaatctgttaacgactactttgctcgtaccctcacaattgcaaataagatgagaatgtatggtgaacaaatggcgga |
34186722 |
T |
|
| Q |
301 |
tcttactgttatcgaaaagattcttcgctcaatgaccgctaggtacgattatgtagtatgttctattgaagaatcacatgaattggattccatggctgta |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34186723 |
tcttactgttatcgaaaagattcttcgctcaatgaccgctaggtacgattatgtagtatgttctattgaagaatcacatgatttggattccatggctgta |
34186822 |
T |
|
| Q |
401 |
gatgaactacagagtagcttgttggtacacgagcaaagaatgaatggacataattcacacgaagagcaagtgctgaaagtaactcaagatgagacaagtg |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34186823 |
gatgaactacagagtagcttgttggtacacgagcaaagaatgaatggacataattcacacgaagagcaagtgctgaaagtaactcaagatgagacaagtg |
34186922 |
T |
|
| Q |
501 |
ctggccgtagccgcggaagaggtggctttcgaggtggagctactcgaggaagaggcagaggaggtagag |
569 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
34186923 |
ctggccgtagccgcggaagaggtggctttcgaggtggagctactcgaggaagaggcaaaggaggtagag |
34186991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 11847703 - 11847771
Alignment:
| Q |
25 |
gaagctgaaggatttgaaggcaaaaaattatctctttcaagcaattgatcgagctgtgcttgaaacaat |
93 |
Q |
| |
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|||| ||| ||| |||||||| |||||||| || |||||||||||| ||| | ||||||||||||||| |
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| T |
11847703 |
gaagttgatggacttgaaggccaaaaattacctttttcaagcaatttctcgtgatgtgcttgaaacaat |
11847771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 143; Significance: 8e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 41 - 459
Target Start/End: Original strand, 518345 - 518763
Alignment:
| Q |
41 |
aaggcaaaaaattatctctttcaagcaattgatcgagctgtgcttgaaacaattctgaataaggggacgtcgaaggagatttgggattctttaaagaaga |
140 |
Q |
| |
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|||||||||||| | |||||||||||||||||||||| |||||||||||||||| | || || | ||| ||||||||||| || ||| || || ||| |
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| T |
518345 |
aaggcaaaaaatcacctctttcaagcaattgatcgagttgtgcttgaaacaattttaaaaaacgagacatcgaaggagatcagg--ttccttgaaaaagt |
518442 |
T |
|
| Q |
141 |
aataccaagggactgctagagtgaagagagcacagcttcaggccttaagacgcgattgggaaattttgtcgatgaaaagtggagaatctgttaacgacta |
240 |
Q |
| |
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||||||||| |||||||||| |||| ||||||||||||||||| | |||| || ||| | ||||| |||||| | ||||||||| ||| |||||| |
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| T |
518443 |
aataccaagtcactgctagagggaagcgagcacagcttcaggccctgtgacgtgactggtagattttacagatgaagaatggagaatcaattatcgacta |
518542 |
T |
|
| Q |
241 |
ctttgctcgtaccctcacaattgcaaataagatgagaatgtatggtgaacaaatggcggatcttactgttatcgaaaagattct--tcgctcaatgaccg |
338 |
Q |
| |
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|||||||| || ||||||||| ||| ||||| |||||| |||||||||||||| || ||||||||||||||||||||||||| ||||||||| ||| |
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| T |
518543 |
ttttgctcgaactgtcacaattgtaaacaagataagaatgcatggtgaacaaatgtcgaatcttactgttatcgaaaagattcttctcgctcaataacct |
518642 |
T |
|
| Q |
339 |
ctaggtacgattatgtagtatgttctattgaagaatcacatgaattggattccatggctgtagatgaactacagagtagcttgttggtacacgagcaaag |
438 |
Q |
| |
|
| |||||||||||||||||||||||||||||| |||| ||||| | ||||||||| || ||||||||| | ||||||| |||||||||||| ||| | |
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| T |
518643 |
ccaggtacgattatgtagtatgttctattgaataatctcatgatctagattccatgaatgcagatgaactccgaagtagctcgttggtacacgaacaacg |
518742 |
T |
|
| Q |
439 |
aatgaatggacataattcaca |
459 |
Q |
| |
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|||||||| || |||||||| |
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| T |
518743 |
aatgaatgaccacaattcaca |
518763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 3e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 41 - 459
Target Start/End: Complemental strand, 367316 - 366899
Alignment:
| Q |
41 |
aaggcaaaaaattatctctttcaagcaattgatcgagctgtgcttgaaacaattctgaataaggggacgtcgaaggagatttgggattctttaaagaaga |
140 |
Q |
| |
|
|||||||||| | | |||||||||||||||||||||| ||||||||||| |||| | || || | ||| ||||||||||| || ||| || || ||| |
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|
| T |
367316 |
aaggcaaaaagtcacctctttcaagcaattgatcgagttgtgcttgaaataattttaaaaaacgagacatcgaaggagatcagg--ttccttgaaaaagt |
367219 |
T |
|
| Q |
141 |
aataccaagggactgctagagtgaagagagcacagcttcaggccttaagacgcgattgggaaattttgtcgatgaaaagtggagaatctgttaacgacta |
240 |
Q |
| |
|
||||||||| |||||||||| |||| |||| || ||||||||| | |||| || ||| | ||||| |||||| | ||||||||| |||| ||||| |
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|
| T |
367218 |
aataccaagtcactgctagagggaagcgagctcaacttcaggccctgtgacgtgactggtagattttacagatgaagaatggagaatcaattaatgacta |
367119 |
T |
|
| Q |
241 |
ctttgctcgtaccctcacaattgcaaataagatga-gaatgtatggtgaacaaatggcggatcttactgttatcgaaaagattcttcgctcaatgaccgc |
339 |
Q |
| |
|
|||||||| || |||||||||| ||| ||||| | |||||||| |||| |||||| || ||||||| ||| |||||||||||||||||||||| ||| | |
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|
| T |
367118 |
ttttgctcgaactctcacaattgtaaacaagattaagaatgtatagtgaccaaatgtcgaatcttaccgttgtcgaaaagattcttcgctcaataacctc |
367019 |
T |
|
| Q |
340 |
taggtacgattatgtagtatgttctattgaagaatcacatgaattggattccatggctgtagatgaactacagagtagcttgttggtacacgagcaaaga |
439 |
Q |
| |
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| ||||||||||||||| |||||||||||| |||| ||||| || ||||||||| || ||||||||| | ||||||| |||||||||||| ||| || |
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|
| T |
367018 |
catgtacgattatgtagtgtgttctattgaataatctcatgatttagattccatgaatgcagatgaactccgaagtagctcgttggtacacgaacaacga |
366919 |
T |
|
| Q |
440 |
atgaatggacataattcaca |
459 |
Q |
| |
|
||||||| || |||||||| |
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|
| T |
366918 |
atgaatgaccacaattcaca |
366899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 14864448 - 14864521
Alignment:
| Q |
23 |
ttgaagctgaaggatttgaaggcaaaaaattatctctttcaagcaattgatcgagctgtgcttgaaacaattct |
96 |
Q |
| |
|
||||||||||||||| | |||||||| |||||| | | ||||||||||||||||| ||| || ||||| ||||| |
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| T |
14864448 |
ttgaagctgaaggatctaaaggcaaagaattatttgtatcaagcaattgatcgagttgttctcgaaaccattct |
14864521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 41 - 96
Target Start/End: Original strand, 26545341 - 26545396
Alignment:
| Q |
41 |
aaggcaaaaaattatctctttcaagcaattgatcgagctgtgcttgaaacaattct |
96 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||| | |||||||||||||||||| |
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|
| T |
26545341 |
aaggcaaaaaattacctctttcaagcaatttctcgtgatgtgcttgaaacaattct |
26545396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 15592569 - 15592637
Alignment:
| Q |
25 |
gaagctgaaggatttgaaggcaaaaaattatctctttcaagcaattgatcgagctgtgcttgaaacaat |
93 |
Q |
| |
|
|||| ||| ||| |||||||| |||||||| || |||||||||||| ||| | ||||||||||||||| |
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| T |
15592569 |
gaagttgatggacttgaaggccaaaaattacctttttcaagcaatttctcgtgatgtgcttgaaacaat |
15592637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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