View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19393_low_3 (Length: 501)

Name: NF19393_low_3
Description: NF19393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19393_low_3
NF19393_low_3
[»] chr1 (23 HSPs)
chr1 (7-396)||(38219633-38220022)
chr1 (253-313)||(25006078-25006135)
chr1 (247-307)||(27738230-27738287)
chr1 (247-305)||(30371111-30371166)
chr1 (191-230)||(2194486-2194525)
chr1 (194-245)||(4700193-4700244)
chr1 (246-307)||(5592735-5592793)
chr1 (247-304)||(7218127-7218181)
chr1 (196-227)||(34278804-34278835)
chr1 (247-307)||(28467357-28467414)
chr1 (198-232)||(34619519-34619553)
chr1 (286-324)||(37842388-37842426)
chr1 (247-277)||(46499931-46499961)
chr1 (190-232)||(48064180-48064222)
chr1 (247-307)||(49517033-49517090)
chr1 (199-232)||(4920907-4920940)
chr1 (286-319)||(26779963-26779996)
chr1 (247-279)||(3062963-3062995)
chr1 (246-278)||(4548683-4548715)
chr1 (249-319)||(24915089-24915156)
chr1 (192-232)||(27820497-27820536)
chr1 (246-304)||(30257645-30257700)
chr1 (193-244)||(35058900-35058952)
[»] chr6 (9 HSPs)
chr6 (251-307)||(4006681-4006734)
chr6 (247-307)||(2514665-2514722)
chr6 (247-285)||(7713988-7714026)
chr6 (247-284)||(29274299-29274336)
chr6 (247-275)||(5551425-5551453)
chr6 (247-279)||(8349739-8349771)
chr6 (247-279)||(9582673-9582705)
chr6 (251-313)||(24626262-24626321)
chr6 (246-312)||(29296338-29296401)
[»] chr2 (14 HSPs)
chr2 (247-307)||(11513861-11513918)
chr2 (249-307)||(43299452-43299508)
chr2 (247-307)||(10143135-10143192)
chr2 (248-307)||(5043610-5043666)
chr2 (247-284)||(6546941-6546978)
chr2 (263-307)||(13056113-13056158)
chr2 (247-306)||(33942113-33942169)
chr2 (245-319)||(12464511-12464582)
chr2 (246-305)||(32757514-32757576)
chr2 (247-275)||(40758986-40759014)
chr2 (196-232)||(41702342-41702378)
chr2 (245-273)||(41851246-41851274)
chr2 (247-317)||(43141834-43141901)
chr2 (287-319)||(44590034-44590066)
[»] chr7 (17 HSPs)
chr7 (249-319)||(12110325-12110392)
chr7 (247-307)||(1417227-1417284)
chr7 (191-247)||(12110248-12110305)
chr7 (247-284)||(12835007-12835044)
chr7 (247-284)||(23918920-23918957)
chr7 (246-279)||(46825060-46825093)
chr7 (246-274)||(946714-946742)
chr7 (247-309)||(9527138-9527197)
chr7 (247-317)||(17989063-17989130)
chr7 (196-232)||(25595983-25596019)
chr7 (247-313)||(27548226-27548289)
chr7 (247-279)||(30456525-30456557)
chr7 (247-279)||(31338471-31338503)
chr7 (197-244)||(34672893-34672941)
chr7 (247-279)||(39591542-39591574)
chr7 (247-301)||(45813236-45813287)
chr7 (247-279)||(46531496-46531528)
[»] chr3 (12 HSPs)
chr3 (247-309)||(48397609-48397668)
chr3 (247-307)||(1816546-1816603)
chr3 (197-231)||(30574070-30574104)
chr3 (247-319)||(30956664-30956733)
chr3 (247-319)||(30972476-30972545)
chr3 (247-307)||(31337451-31337508)
chr3 (247-319)||(33405205-33405274)
chr3 (196-230)||(43079650-43079684)
chr3 (245-274)||(3182442-3182471)
chr3 (247-284)||(42808942-42808979)
chr3 (197-233)||(19679461-19679497)
chr3 (199-231)||(31762206-31762238)
[»] chr8 (10 HSPs)
chr8 (247-307)||(34770855-34770912)
chr8 (196-233)||(31751712-31751749)
chr8 (249-307)||(6509353-6509408)
chr8 (193-232)||(32976304-32976343)
chr8 (199-244)||(6526369-6526414)
chr8 (246-275)||(39881826-39881855)
chr8 (247-284)||(45071165-45071202)
chr8 (192-232)||(1112735-1112775)
chr8 (247-275)||(14482165-14482193)
chr8 (247-279)||(28784870-28784902)
[»] chr5 (12 HSPs)
chr5 (251-315)||(34205206-34205267)
chr5 (193-230)||(11715018-11715055)
chr5 (251-313)||(18857444-18857503)
chr5 (197-232)||(42573936-42573971)
chr5 (194-232)||(6593175-6593213)
chr5 (247-319)||(9202786-9202855)
chr5 (247-306)||(10272482-10272538)
chr5 (247-284)||(32969187-32969224)
chr5 (199-231)||(5559610-5559642)
chr5 (196-232)||(29845054-29845090)
chr5 (196-232)||(38105020-38105056)
chr5 (247-307)||(40534159-40534219)
[»] chr4 (16 HSPs)
chr4 (249-313)||(2996538-2996599)
chr4 (247-318)||(51630074-51630142)
chr4 (253-307)||(7368105-7368157)
chr4 (196-231)||(19039658-19039693)
chr4 (199-245)||(20936357-20936404)
chr4 (196-227)||(46201276-46201307)
chr4 (193-232)||(54214889-54214928)
chr4 (247-319)||(47119003-47119072)
chr4 (247-307)||(30024663-30024726)
chr4 (249-307)||(13949894-13949949)
chr4 (243-279)||(19429563-19429599)
chr4 (247-279)||(46013375-46013407)
chr4 (247-279)||(46247181-46247213)
chr4 (196-232)||(47399411-47399447)
chr4 (247-317)||(49219102-49219169)
chr4 (287-323)||(52734803-52734839)
[»] scaffold0024 (1 HSPs)
scaffold0024 (249-313)||(27541-27602)


Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 7 - 396
Target Start/End: Original strand, 38219633 - 38220022
Alignment:
Q  7 tcgagtgagaagaagattaggtgatagacctagaaagttttgtgccacattttccacccaaaaaagtttattgttagtcatggcatctttgttctcaaca 106  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38219633 tcgagtgtgaagaagattaggtgataaacctagaaagttttgtgccacattttccacccaaaaaagtttattgttagtcatggcatctttgttctcaaca 38219732  T
Q  107 cagttggtgcagagtcagaaccttctttctggtttcaatgctgcccaggttactatctaattcttattattcattctcatcttcttagaccctgtttgga 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38219733 cagttggtgcagagtcagaaccttctttctggtttcaatgctgcccaggttactatctaattcttattattcattctcatcttcttagaccctgtttgga 38219832  T
Q  207 taaacaccttaatttgcagcttatagttaagcacttatgaaaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagc 306  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38219833 taaacatcttaatttgcagcttatagctaagcacttatgaaaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagc 38219932  T
Q  307 tctcttgaagaacatatatattaagaaaacagcttatgaatatgtcatcactcataagctgtttaatacgtctttaaatgtgggttgatg 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  38219933 tctcttgaagaacatatatattaagaaaacagcttatgaatatgtcatcactcataagctgtttaatacgtctttaaatgtggattgatg 38220022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 313
Target Start/End: Complemental strand, 25006135 - 25006078
Alignment:
Q  253 taaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagctctcttg 313  Q
    |||||||||||||||||||||| |||| ||||   |||||||||||||||||||| |||||    
T  25006135 taaaataaagtcaaattgttttcatataagct---ataagttgttttcataagctatcttg 25006078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 307
Target Start/End: Complemental strand, 27738287 - 27738230
Alignment:
Q  247 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagct 307  Q
    |||||||||||||||||||||||||||| |||| ||   |||||| |||||||||||||||    
T  27738287 aaaagataaaataaagtcaaattgttttcatataag---ctataatttgttttcataagct 27738230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 247 - 305
Target Start/End: Original strand, 30371111 - 30371166
Alignment:
Q  247 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataag 305  Q
    ||||||||||||||| |||||||||||| |||| ||   ||||||||||||||||||||    
T  30371111 aaaagataaaataaactcaaattgttttcatataag---ctataagttgttttcataag 30371166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 2194525 - 2194486
Alignment:
Q  191 ttagaccctgtttggataaacaccttaatttgcagcttat 230  Q
    |||| ||||||||||||||||| |||||||||||||||||    
T  2194525 ttaggccctgtttggataaacagcttaatttgcagcttat 2194486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 245
Target Start/End: Complemental strand, 4700244 - 4700193
Alignment:
Q  194 gaccctgtttggataaacaccttaatttgcagcttatagttaagcacttatg 245  Q
    |||||||||||||| |||| ||||||||||||||| ||  ||||||||||||    
T  4700244 gaccctgtttggattaacaacttaatttgcagcttttacataagcacttatg 4700193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 307
Target Start/End: Complemental strand, 5592793 - 5592735
Alignment:
Q  246 aaaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagct 307  Q
    ||||||||||||||||||| ||||||| | |||| ||   ||||||||||||||||||||||    
T  5592793 aaaaagataaaataaagtcgaattgttgtcatataag---ctataagttgttttcataagct 5592735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 304
Target Start/End: Complemental strand, 7218181 - 7218127
Alignment:
Q  247 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataa 304  Q
    ||||| |||||||||||||||||||||| |||| ||   |||||||||||||||||||    
T  7218181 aaaaggtaaaataaagtcaaattgttttcatataag---ctataagttgttttcataa 7218127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 227
Target Start/End: Complemental strand, 34278835 - 34278804
Alignment:
Q  196 ccctgtttggataaacaccttaatttgcagct 227  Q
    ||||||||||||||||||||||||||||||||    
T  34278835 ccctgtttggataaacaccttaatttgcagct 34278804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 307
Target Start/End: Complemental strand, 28467414 - 28467357
Alignment:
Q  247 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagct 307  Q
    ||||||||||||||||||||||| |||| |||| ||   ||| ||||||||||||||||||    
T  28467414 aaaagataaaataaagtcaaattattttcatataag---ctacaagttgttttcataagct 28467357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 232
Target Start/End: Complemental strand, 34619553 - 34619519
Alignment:
Q  198 ctgtttggataaacaccttaatttgcagcttatag 232  Q
    ||||||||||||||| |||||||||||||||||||    
T  34619553 ctgtttggataaacagcttaatttgcagcttatag 34619519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 324
Target Start/End: Complemental strand, 37842426 - 37842388
Alignment:
Q  286 ctataagttgttttcataagctctcttgaagaacatata 324  Q
    |||||||||||||||||||||| ||||||||||| ||||    
T  37842426 ctataagttgttttcataagctatcttgaagaacttata 37842388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 277
Target Start/End: Complemental strand, 46499961 - 46499931
Alignment:
Q  247 aaaagataaaataaagtcaaattgtttttat 277  Q
    |||||||||||||||||||||||||||||||    
T  46499961 aaaagataaaataaagtcaaattgtttttat 46499931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 48064180 - 48064222
Alignment:
Q  190 cttagaccctgtttggataaacaccttaatttgcagcttatag 232  Q
    ||||| || |||||||||||||| |||||||||||||||||||    
T  48064180 cttaggccatgtttggataaacaacttaatttgcagcttatag 48064222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 307
Target Start/End: Original strand, 49517033 - 49517090
Alignment:
Q  247 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagct 307  Q
    |||||||||||||||||||||||||||| || | ||   ||||||| ||||||||||||||    
T  49517033 aaaagataaaataaagtcaaattgttttcatttaag---ctataagctgttttcataagct 49517090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 232
Target Start/End: Complemental strand, 4920940 - 4920907
Alignment:
Q  199 tgtttggataaacaccttaatttgcagcttatag 232  Q
    |||||||||||||| |||||||||||||||||||    
T  4920940 tgtttggataaacagcttaatttgcagcttatag 4920907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 319
Target Start/End: Complemental strand, 26779996 - 26779963
Alignment:
Q  286 ctataagttgttttcataagctctcttgaagaac 319  Q
    |||||||||||||||||||||| |||||||||||    
T  26779996 ctataagttgttttcataagctatcttgaagaac 26779963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 279
Target Start/End: Original strand, 3062963 - 3062995
Alignment:
Q  247 aaaagataaaataaagtcaaattgtttttatat 279  Q
    |||||||||||||| ||||||||||||||||||    
T  3062963 aaaagataaaataatgtcaaattgtttttatat 3062995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 246 - 278
Target Start/End: Original strand, 4548683 - 4548715
Alignment:
Q  246 aaaaagataaaataaagtcaaattgtttttata 278  Q
    |||||||||||||||||||||| ||||||||||    
T  4548683 aaaaagataaaataaagtcaaactgtttttata 4548715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 249 - 319
Target Start/End: Complemental strand, 24915156 - 24915089
Alignment:
Q  249 aagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagctctcttgaagaac 319  Q
    ||||||||||||||| ||||||||||| |||    | ||||||| |||||||||||||| ||||| |||||    
T  24915156 aagataaaataaagttaaattgtttttgtat---atgctataagctgttttcataagctgtcttggagaac 24915089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 27820536 - 27820497
Alignment:
Q  192 tagaccctgtttggataaacaccttaatttgcagcttatag 232  Q
    ||||||||||||||||||||| ||| |||||||||||||||    
T  27820536 tagaccctgtttggataaacaactt-atttgcagcttatag 27820497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 246 - 304
Target Start/End: Original strand, 30257645 - 30257700
Alignment:
Q  246 aaaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataa 304  Q
    |||||||||||||||||||||| |||||  |||| |||||   ||||||||||||||||    
T  30257645 aaaaagataaaataaagtcaaactgtttccatataagctt---taagttgttttcataa 30257700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 35058952 - 35058900
Alignment:
Q  193 agaccctgtttggataaacaccttaatttgcagcttatag-ttaagcacttat 244  Q
    |||||||||||||||||||| |||| |||||| |||||||  |||||||||||    
T  35058952 agaccctgtttggataaacagcttattttgcaacttatagcataagcacttat 35058900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 251 - 307
Target Start/End: Original strand, 4006681 - 4006734
Alignment:
Q  251 gataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagct 307  Q
    ||||||||||||||||||||||||||||| ||   ||||||||||||||||||||||    
T  4006681 gataaaataaagtcaaattgtttttatataag---ctataagttgttttcataagct 4006734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 307
Target Start/End: Original strand, 2514665 - 2514722
Alignment:
Q  247 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagct 307  Q
    ||||||||||||||||||||| |  |||||||||||   ||||||||| ||||||||||||    
T  2514665 aaaagataaaataaagtcaaactaattttatatgag---ctataagttattttcataagct 2514722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 285
Target Start/End: Original strand, 7713988 - 7714026
Alignment:
Q  247 aaaagataaaataaagtcaaattgtttttatatgagctt 285  Q
    |||||||||||||||||||||||||||| |||| |||||    
T  7713988 aaaagataaaataaagtcaaattgttttcatataagctt 7714026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 284
Target Start/End: Complemental strand, 29274336 - 29274299
Alignment:
Q  247 aaaagataaaataaagtcaaattgtttttatatgagct 284  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  29274336 aaaagataaaataaagtcaaattgttttcatataagct 29274299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 275
Target Start/End: Original strand, 5551425 - 5551453
Alignment:
Q  247 aaaagataaaataaagtcaaattgttttt 275  Q
    |||||||||||||||||||||||||||||    
T  5551425 aaaagataaaataaagtcaaattgttttt 5551453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 279
Target Start/End: Complemental strand, 8349771 - 8349739
Alignment:
Q  247 aaaagataaaataaagtcaaattgtttttatat 279  Q
    ||||||||||||||||| |||||||||||||||    
T  8349771 aaaagataaaataaagttaaattgtttttatat 8349739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 279
Target Start/End: Complemental strand, 9582705 - 9582673
Alignment:
Q  247 aaaagataaaataaagtcaaattgtttttatat 279  Q
    ||||||||||||||||| |||||||||||||||    
T  9582705 aaaagataaaataaagtgaaattgtttttatat 9582673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 251 - 313
Target Start/End: Original strand, 24626262 - 24626321
Alignment:
Q  251 gataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagctctcttg 313  Q
    ||||||| ||||| ||||||||||| |||    |||||||||||||||||||||||| |||||    
T  24626262 gataaaacaaagttaaattgtttttgtata---ttctataagttgttttcataagctatcttg 24626321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 29296401 - 29296338
Alignment:
Q  246 aaaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagctctctt 312  Q
    |||||||||||||||||| ||||| ||||| ||| || |   ||||||||||||| |||||||||||    
T  29296401 aaaaagataaaataaagttaaattatttttgtataaggt---ataagttgttttcttaagctctctt 29296338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 247 - 307
Target Start/End: Original strand, 11513861 - 11513918
Alignment:
Q  247 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagct 307  Q
    |||||||||||||||||||||||||||| |||| ||   ||||||||||||||||||||||    
T  11513861 aaaagataaaataaagtcaaattgttttcatataag---ctataagttgttttcataagct 11513918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 307
Target Start/End: Complemental strand, 43299508 - 43299452
Alignment:
Q  249 aagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagct 307  Q
    ||||||||||||||||||| ||||||| ||| |   |||||||||||||||||||||||    
T  43299508 aagataaaataaagtcaaactgtttttgtataaa--tctataagttgttttcataagct 43299452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 307
Target Start/End: Original strand, 10143135 - 10143192
Alignment:
Q  247 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagct 307  Q
    |||||||||||| |||||||| ||||||||||| ||   ||||||||| ||||||||||||    
T  10143135 aaaagataaaattaagtcaaactgtttttatataag---ctataagtttttttcataagct 10143192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 307
Target Start/End: Complemental strand, 5043666 - 5043610
Alignment:
Q  248 aaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagct 307  Q
    |||||||||||||||||||| |||||| |||| ||   ||| ||||||||||||||||||    
T  5043666 aaagataaaataaagtcaaactgttttcatataag---ctagaagttgttttcataagct 5043610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 284
Target Start/End: Original strand, 6546941 - 6546978
Alignment:
Q  247 aaaagataaaataaagtcaaattgtttttatatgagct 284  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  6546941 aaaagataaaataaagtcaaattgtttatatataagct 6546978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 13056113 - 13056158
Alignment:
Q  263 tcaaattgtttttatatgagctt-ctataagttgttttcataagct 307  Q
    |||||||||||| |||| ||||| ||||||||||||||||||||||    
T  13056113 tcaaattgttttcatataagcttgctataagttgttttcataagct 13056158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 306
Target Start/End: Original strand, 33942113 - 33942169
Alignment:
Q  247 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagc 306  Q
    ||||||||||||||||||||| |||||| || | ||   |||||||||||||||||||||    
T  33942113 aaaagataaaataaagtcaaactgttttcatgtaag---ctataagttgttttcataagc 33942169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 245 - 319
Target Start/End: Complemental strand, 12464582 - 12464511
Alignment:
Q  245 gaaaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagctctcttgaagaac 319  Q
    ||||||||||||||||||| ||||||||||| |||    | ||||||| | |||||||||||| ||||| |||||    
T  12464582 gaaaaagataaaataaagttaaattgtttttgtat---atgctataagctattttcataagctatcttggagaac 12464511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 246 - 305
Target Start/End: Complemental strand, 32757576 - 32757514
Alignment:
Q  246 aaaaagataaaataaagtcaaattgtttttatatgagct---tctataagttgttttcataag 305  Q
    ||||||||||||| || ||||||| ||||||||| ||||    ||||||||||||||||||||    
T  32757576 aaaaagataaaatcaaatcaaattctttttatataagctataactataagttgttttcataag 32757514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 275
Target Start/End: Original strand, 40758986 - 40759014
Alignment:
Q  247 aaaagataaaataaagtcaaattgttttt 275  Q
    |||||||||||||||||||||||||||||    
T  40758986 aaaagataaaataaagtcaaattgttttt 40759014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 196 - 232
Target Start/End: Complemental strand, 41702378 - 41702342
Alignment:
Q  196 ccctgtttggataaacaccttaatttgcagcttatag 232  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  41702378 ccctgtttggataaacagcttaattttcagcttatag 41702342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 245 - 273
Target Start/End: Complemental strand, 41851274 - 41851246
Alignment:
Q  245 gaaaaagataaaataaagtcaaattgttt 273  Q
    |||||||||||||||||||||||||||||    
T  41851274 gaaaaagataaaataaagtcaaattgttt 41851246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 317
Target Start/End: Original strand, 43141834 - 43141901
Alignment:
Q  247 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagctctcttgaaga 317  Q
    |||||||||| ||||||||||||||||  |||| ||   ||||||| |||||||||||||| || ||||||    
T  43141834 aaaagataaagtaaagtcaaattgtttccatataag---ctataagatgttttcataagctatcctgaaga 43141901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 319
Target Start/End: Original strand, 44590034 - 44590066
Alignment:
Q  287 tataagttgttttcataagctctcttgaagaac 319  Q
    ||||||||||||||||||||| |||||||||||    
T  44590034 tataagttgttttcataagctatcttgaagaac 44590066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 319
Target Start/End: Original strand, 12110325 - 12110392
Alignment:
Q  249 aagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagctctcttgaagaac 319  Q
    ||||||||||||||||||||||||||  ||| ||   ||||||| |||||||||||||| |||||||||||    
T  12110325 aagataaaataaagtcaaattgttttggtataag---ctataagctgttttcataagctatcttgaagaac 12110392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 307
Target Start/End: Original strand, 1417227 - 1417284
Alignment:
Q  247 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagct 307  Q
    |||||||||||||||||||||||||||| |||| ||   | ||||||||||||||||||||    
T  1417227 aaaagataaaataaagtcaaattgttttcatataag---caataagttgttttcataagct 1417284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 12110248 - 12110305
Alignment:
Q  191 ttagaccctgtttggataaacaccttaatttgcagcttatag-ttaagcacttatgaa 247  Q
    |||| |||||||| |||||||| ||||||||||| |||||||  ||||||||||||||    
T  12110248 ttaggccctgtttcgataaacagcttaatttgcaacttatagcataagcacttatgaa 12110305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 284
Target Start/End: Complemental strand, 12835044 - 12835007
Alignment:
Q  247 aaaagataaaataaagtcaaattgtttttatatgagct 284  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  12835044 aaaagataaaataaagtcaaattgttttcatattagct 12835007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 284
Target Start/End: Original strand, 23918920 - 23918957
Alignment:
Q  247 aaaagataaaataaagtcaaattgtttttatatgagct 284  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  23918920 aaaagataaaataaagtcaaattgttttcatataagct 23918957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 279
Target Start/End: Original strand, 46825060 - 46825093
Alignment:
Q  246 aaaaagataaaataaagtcaaattgtttttatat 279  Q
    ||||||||||||||||||||||||||||| ||||    
T  46825060 aaaaagataaaataaagtcaaattgttttcatat 46825093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 246 - 274
Target Start/End: Original strand, 946714 - 946742
Alignment:
Q  246 aaaaagataaaataaagtcaaattgtttt 274  Q
    |||||||||||||||||||||||||||||    
T  946714 aaaaagataaaataaagtcaaattgtttt 946742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 309
Target Start/End: Complemental strand, 9527197 - 9527138
Alignment:
Q  247 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagctct 309  Q
    |||||||| |||||||||||| |||||| |||| |    ||||||||||||||||||||||||    
T  9527197 aaaagatataataaagtcaaactgttttcatataa---actataagttgttttcataagctct 9527138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 317
Target Start/End: Complemental strand, 17989130 - 17989063
Alignment:
Q  247 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagctctcttgaaga 317  Q
    |||| |||||||||||||||| |||||| |||| |    |||||| |||||||||||||||||| ||||||    
T  17989130 aaaatataaaataaagtcaaactgttttcatataa---actataatttgttttcataagctctcctgaaga 17989063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 196 - 232
Target Start/End: Original strand, 25595983 - 25596019
Alignment:
Q  196 ccctgtttggataaacaccttaatttgcagcttatag 232  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  25595983 ccctgtttggataaacaacttaacttgcagcttatag 25596019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 313
Target Start/End: Original strand, 27548226 - 27548289
Alignment:
Q  247 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagctctcttg 313  Q
    |||||||||||||||||| ||||||||| || | ||   ||||||| |||||||||||||| |||||    
T  27548226 aaaagataaaataaagtctaattgttttcatttaag---ctataagctgttttcataagctatcttg 27548289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 279
Target Start/End: Complemental strand, 30456557 - 30456525
Alignment:
Q  247 aaaagataaaataaagtcaaattgtttttatat 279  Q
    |||||||||||||||||||||||||||| ||||    
T  30456557 aaaagataaaataaagtcaaattgttttcatat 30456525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 279
Target Start/End: Original strand, 31338471 - 31338503
Alignment:
Q  247 aaaagataaaataaagtcaaattgtttttatat 279  Q
    ||||||||||||||||||||| |||||||||||    
T  31338471 aaaagataaaataaagtcaaactgtttttatat 31338503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 244
Target Start/End: Complemental strand, 34672941 - 34672893
Alignment:
Q  197 cctgtttggataaacaccttaatttgcagcttatag-ttaagcacttat 244  Q
    |||||||||||||||| |||||||| ||||||||||  |||||||||||    
T  34672941 cctgtttggataaacagcttaattttcagcttatagcataagcacttat 34672893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 279
Target Start/End: Complemental strand, 39591574 - 39591542
Alignment:
Q  247 aaaagataaaataaagtcaaattgtttttatat 279  Q
    |||||||||||||||||||||||||||| ||||    
T  39591574 aaaagataaaataaagtcaaattgttttcatat 39591542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 301
Target Start/End: Complemental strand, 45813287 - 45813236
Alignment:
Q  247 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttca 301  Q
    |||||||||||||||||||| ||||||| |||| |   |||||||||||||||||    
T  45813287 aaaagataaaataaagtcaacttgttttcatataa---tctataagttgttttca 45813236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 279
Target Start/End: Original strand, 46531496 - 46531528
Alignment:
Q  247 aaaagataaaataaagtcaaattgtttttatat 279  Q
    ||||||||||||||||||||| |||||||||||    
T  46531496 aaaagataaaataaagtcaaactgtttttatat 46531528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 247 - 309
Target Start/End: Original strand, 48397609 - 48397668
Alignment:
Q  247 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagctct 309  Q
    ||||||||||||||||||||||||||||||| | ||   ||||||||||||||||| ||||||    
T  48397609 aaaagataaaataaagtcaaattgtttttatttaag---ctataagttgttttcattagctct 48397668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 307
Target Start/End: Original strand, 1816546 - 1816603
Alignment:
Q  247 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagct 307  Q
    ||||||||||||||||||||| ||||||| ||| ||    |||||||||||||||||||||    
T  1816546 aaaagataaaataaagtcaaactgtttttgtataag---atataagttgttttcataagct 1816603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 231
Target Start/End: Complemental strand, 30574104 - 30574070
Alignment:
Q  197 cctgtttggataaacaccttaatttgcagcttata 231  Q
    |||||||||||||||||| ||||||||||||||||    
T  30574104 cctgtttggataaacaccataatttgcagcttata 30574070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 319
Target Start/End: Complemental strand, 30956733 - 30956664
Alignment:
Q  247 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagctctcttgaagaac 319  Q
    ||||||||||||||||| ||||||||||| |||  |   |||||||||||||||| ||||| ||||| |||||    
T  30956733 aaaagataaaataaagttaaattgtttttgtatagg---ctataagttgttttcaaaagctatcttggagaac 30956664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 319
Target Start/End: Complemental strand, 30972545 - 30972476
Alignment:
Q  247 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagctctcttgaagaac 319  Q
    ||||||||||||||||| ||||||||||| |||  |   |||||||||||||||| ||||| ||||| |||||    
T  30972545 aaaagataaaataaagttaaattgtttttgtatagg---ctataagttgttttcaaaagctatcttggagaac 30972476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 307
Target Start/End: Complemental strand, 31337508 - 31337451
Alignment:
Q  247 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagct 307  Q
    ||||||||||||||||||||| ||||||||||| ||    |||||||||| ||||||||||    
T  31337508 aaaagataaaataaagtcaaactgtttttatataag---ttataagttgtattcataagct 31337451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 319
Target Start/End: Complemental strand, 33405274 - 33405205
Alignment:
Q  247 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagctctcttgaagaac 319  Q
    ||||| ||||||||||| || ||||||| |||| ||||   ||||| |||||||||||||| |||||||||||    
T  33405274 aaaaggtaaaataaagttaatttgttttcatataagct---ataagctgttttcataagctatcttgaagaac 33405205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 230
Target Start/End: Original strand, 43079650 - 43079684
Alignment:
Q  196 ccctgtttggataaacaccttaatttgcagcttat 230  Q
    ||||||||||||||||| |||||||||||||||||    
T  43079650 ccctgtttggataaacagcttaatttgcagcttat 43079684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 274
Target Start/End: Complemental strand, 3182471 - 3182442
Alignment:
Q  245 gaaaaagataaaataaagtcaaattgtttt 274  Q
    ||||||||||||||||||||||||||||||    
T  3182471 gaaaaagataaaataaagtcaaattgtttt 3182442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 284
Target Start/End: Original strand, 42808942 - 42808979
Alignment:
Q  247 aaaagataaaataaagtcaaattgtttttatatgagct 284  Q
    ||||||||||||||||| ||||||||||||||| ||||    
T  42808942 aaaagataaaataaagttaaattgtttttatataagct 42808979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 19679497 - 19679461
Alignment:
Q  197 cctgtttggataaacaccttaatttgcagcttatagt 233  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  19679497 cctggttggataaacaacttaatttgcagcttatagt 19679461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 31762206 - 31762238
Alignment:
Q  199 tgtttggataaacaccttaatttgcagcttata 231  Q
    |||||||||||||| ||||||||||||||||||    
T  31762206 tgtttggataaacaacttaatttgcagcttata 31762238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 307
Target Start/End: Original strand, 34770855 - 34770912
Alignment:
Q  247 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagct 307  Q
    |||||||||||||||||||||||||||| || | ||   ||||||||||||||||||||||    
T  34770855 aaaagataaaataaagtcaaattgttttcatttaag---ctataagttgttttcataagct 34770912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 196 - 233
Target Start/End: Complemental strand, 31751749 - 31751712
Alignment:
Q  196 ccctgtttggataaacaccttaatttgcagcttatagt 233  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  31751749 ccctgtttggataaacaacttaatttgcagcttatagt 31751712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 249 - 307
Target Start/End: Complemental strand, 6509408 - 6509353
Alignment:
Q  249 aagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagct 307  Q
    ||||||||||||||||||||||| ||||||| ||   ||||||| ||||||||||||||    
T  6509408 aagataaaataaagtcaaattgtatttatataag---ctataagctgttttcataagct 6509353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 232
Target Start/End: Original strand, 32976304 - 32976343
Alignment:
Q  193 agaccctgtttggataaacaccttaatttgcagcttatag 232  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  32976304 agaccatgtttggataaacaccttaatatgcagcttatag 32976343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 244
Target Start/End: Complemental strand, 6526414 - 6526369
Alignment:
Q  199 tgtttggataaacaccttaatttgcagcttatagttaagcacttat 244  Q
    |||||||||||||| ||||||||||||||||||  |||||| ||||    
T  6526414 tgtttggataaacagcttaatttgcagcttatacataagcatttat 6526369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 275
Target Start/End: Complemental strand, 39881855 - 39881826
Alignment:
Q  246 aaaaagataaaataaagtcaaattgttttt 275  Q
    ||||||||||||||||||||||||||||||    
T  39881855 aaaaagataaaataaagtcaaattgttttt 39881826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 284
Target Start/End: Original strand, 45071165 - 45071202
Alignment:
Q  247 aaaagataaaataaagtcaaattgtttttatatgagct 284  Q
    |||||| |||||||||||||||||||||||||| ||||    
T  45071165 aaaagacaaaataaagtcaaattgtttttatataagct 45071202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 1112735 - 1112775
Alignment:
Q  192 tagaccctgtttggataaacaccttaatttgcagcttatag 232  Q
    |||||||||||| || ||||| |||||||||||||||||||    
T  1112735 tagaccctgtttagaaaaacaacttaatttgcagcttatag 1112775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 275
Target Start/End: Original strand, 14482165 - 14482193
Alignment:
Q  247 aaaagataaaataaagtcaaattgttttt 275  Q
    |||||||||||||||||||||||||||||    
T  14482165 aaaagataaaataaagtcaaattgttttt 14482193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 279
Target Start/End: Complemental strand, 28784902 - 28784870
Alignment:
Q  247 aaaagataaaataaagtcaaattgtttttatat 279  Q
    |||||||||||||||||||||||||||| ||||    
T  28784902 aaaagataaaataaagtcaaattgttttgatat 28784870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 315
Target Start/End: Original strand, 34205206 - 34205267
Alignment:
Q  251 gataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagctctcttgaa 315  Q
    |||||| |||||||||||| ||||||||| ||||   |||||||||||||||||||| |||||||    
T  34205206 gataaagtaaagtcaaattatttttatataagct---ataagttgttttcataagctatcttgaa 34205267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 193 - 230
Target Start/End: Complemental strand, 11715055 - 11715018
Alignment:
Q  193 agaccctgtttggataaacaccttaatttgcagcttat 230  Q
    |||||||||||||||||||| |||||||||||||||||    
T  11715055 agaccctgtttggataaacaacttaatttgcagcttat 11715018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 313
Target Start/End: Complemental strand, 18857503 - 18857444
Alignment:
Q  251 gataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagctctcttg 313  Q
    ||||||||||||||||||||||||| ||| |   |||||||| |||||||||||||| |||||    
T  18857503 gataaaataaagtcaaattgtttttctataa---tctataagctgttttcataagctgtcttg 18857444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 232
Target Start/End: Complemental strand, 42573971 - 42573936
Alignment:
Q  197 cctgtttggataaacaccttaatttgcagcttatag 232  Q
    |||||||||||||||| |||||||||||||||||||    
T  42573971 cctgtttggataaacagcttaatttgcagcttatag 42573936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 232
Target Start/End: Original strand, 6593175 - 6593213
Alignment:
Q  194 gaccctgtttggataaacaccttaatttgcagcttatag 232  Q
    ||||||||||||||||||| |||||||| ||||||||||    
T  6593175 gaccctgtttggataaacaacttaatttacagcttatag 6593213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 319
Target Start/End: Complemental strand, 9202855 - 9202786
Alignment:
Q  247 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagctctcttgaagaac 319  Q
    ||||||||||||||||| |||||||||| |||| ||   | ||||| |||||||||||| | |||||||||||    
T  9202855 aaaagataaaataaagttaaattgttttcatataag---caataagctgttttcataagttatcttgaagaac 9202786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 306
Target Start/End: Complemental strand, 10272538 - 10272482
Alignment:
Q  247 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagc 306  Q
    |||||||||||| |||||||||||||||  ||| ||   |||||||||||||||||||||    
T  10272538 aaaagataaaattaagtcaaattgttttcgtataag---ctataagttgttttcataagc 10272482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 284
Target Start/End: Complemental strand, 32969224 - 32969187
Alignment:
Q  247 aaaagataaaataaagtcaaattgtttttatatgagct 284  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  32969224 aaaagataaaataaagtcaaattatttttatataagct 32969187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 5559610 - 5559642
Alignment:
Q  199 tgtttggataaacaccttaatttgcagcttata 231  Q
    |||||||||||||| ||||||||||||||||||    
T  5559610 tgtttggataaacaacttaatttgcagcttata 5559642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 196 - 232
Target Start/End: Complemental strand, 29845090 - 29845054
Alignment:
Q  196 ccctgtttggataaacaccttaatttgcagcttatag 232  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  29845090 ccctgtttggataaacaacttaatttgcaacttatag 29845054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 196 - 232
Target Start/End: Complemental strand, 38105056 - 38105020
Alignment:
Q  196 ccctgtttggataaacaccttaatttgcagcttatag 232  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  38105056 ccctgtttggataaacaacttattttgcagcttatag 38105020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 307
Target Start/End: Original strand, 40534159 - 40534219
Alignment:
Q  247 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagct 307  Q
    ||||||| ||||||| ||| ||| |||| |||| ||||  |||||||||||||||||||||    
T  40534159 aaaagatgaaataaaatcacattattttcatataagctagtataagttgttttcataagct 40534219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 313
Target Start/End: Original strand, 2996538 - 2996599
Alignment:
Q  249 aagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagctctcttg 313  Q
    ||||||||||| ||||||||||||||||||| ||    ||||||||||||||||||||| |||||    
T  2996538 aagataaaatacagtcaaattgtttttatataag---ttataagttgttttcataagctatcttg 2996599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 247 - 318
Target Start/End: Original strand, 51630074 - 51630142
Alignment:
Q  247 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagctctcttgaagaa 318  Q
    ||||||||||||||||| |||||||||| |||| ||   ||||||| | |||||||||||| ||||||||||    
T  51630074 aaaagataaaataaagttaaattgttttgatataag---ctataagctattttcataagctatcttgaagaa 51630142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 7368157 - 7368105
Alignment:
Q  253 taaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagct 307  Q
    |||||||||||||||||||||| |||| ||||  |||||||||||| ||||||||    
T  7368157 taaaataaagtcaaattgttttcatataagct--tataagttgtttccataagct 7368105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 231
Target Start/End: Original strand, 19039658 - 19039693
Alignment:
Q  196 ccctgtttggataaacaccttaatttgcagcttata 231  Q
    ||||||||||||||||| ||||||||||||||||||    
T  19039658 ccctgtttggataaacaacttaatttgcagcttata 19039693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 245
Target Start/End: Complemental strand, 20936404 - 20936357
Alignment:
Q  199 tgtttggataaacaccttaatttgcagcttatagt-taagcacttatg 245  Q
    |||||||||||| | |||||||||||||||||||| ||||||||||||    
T  20936404 tgtttggataaagagcttaatttgcagcttatagtataagcacttatg 20936357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 227
Target Start/End: Original strand, 46201276 - 46201307
Alignment:
Q  196 ccctgtttggataaacaccttaatttgcagct 227  Q
    ||||||||||||||||||||||||||||||||    
T  46201276 ccctgtttggataaacaccttaatttgcagct 46201307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 232
Target Start/End: Original strand, 54214889 - 54214928
Alignment:
Q  193 agaccctgtttggataaacaccttaatttgcagcttatag 232  Q
    |||| ||||||||||||||| |||||||||||||||||||    
T  54214889 agactctgtttggataaacaacttaatttgcagcttatag 54214928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 319
Target Start/End: Complemental strand, 47119072 - 47119003
Alignment:
Q  247 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagctctcttgaagaac 319  Q
    ||||||||||| ||||| |||||||||| |||| ||||   ||||||||| |||||| ||| |||||||||||    
T  47119072 aaaagataaaacaaagttaaattgttttcatataagct---ataagttgtattcatatgctatcttgaagaac 47119003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 307
Target Start/End: Original strand, 30024663 - 30024726
Alignment:
Q  247 aaaagataaaataaagtcaaattgtttttatatgagct---tctataagttgttttcataagct 307  Q
    ||||||||||||||||| |||||||||| |||| ||||    |||||||||||| |||||||||    
T  30024663 aaaagataaaataaagtaaaattgttttcatataagctataactataagttgttgtcataagct 30024726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 249 - 307
Target Start/End: Complemental strand, 13949949 - 13949894
Alignment:
Q  249 aagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagct 307  Q
    |||||||||||||||||||||||||| |||| ||   |||||||||||||  |||||||    
T  13949949 aagataaaataaagtcaaattgttttcatataag---ctataagttgtttgtataagct 13949894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 279
Target Start/End: Complemental strand, 19429599 - 19429563
Alignment:
Q  243 atgaaaaagataaaataaagtcaaattgtttttatat 279  Q
    |||| |||||||||||||||||||| |||||||||||    
T  19429599 atgacaaagataaaataaagtcaaactgtttttatat 19429563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 279
Target Start/End: Complemental strand, 46013407 - 46013375
Alignment:
Q  247 aaaagataaaataaagtcaaattgtttttatat 279  Q
    ||||||||||||||||||||| |||||||||||    
T  46013407 aaaagataaaataaagtcaaactgtttttatat 46013375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 279
Target Start/End: Original strand, 46247181 - 46247213
Alignment:
Q  247 aaaagataaaataaagtcaaattgtttttatat 279  Q
    ||||||||||||||||||||| |||||||||||    
T  46247181 aaaagataaaataaagtcaaactgtttttatat 46247213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 196 - 232
Target Start/End: Original strand, 47399411 - 47399447
Alignment:
Q  196 ccctgtttggataaacaccttaatttgcagcttatag 232  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  47399411 ccctgtttggataaacaacttagtttgcagcttatag 47399447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 317
Target Start/End: Original strand, 49219102 - 49219169
Alignment:
Q  247 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagctctcttgaaga 317  Q
    |||| |||||||||||||||||| |||| |||| ||   ||||||||||||||||||| || |||| ||||    
T  49219102 aaaatataaaataaagtcaaattattttcatataag---ctataagttgttttcataaactatcttaaaga 49219169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 323
Target Start/End: Original strand, 52734803 - 52734839
Alignment:
Q  287 tataagttgttttcataagctctcttgaagaacatat 323  Q
    ||||||||||||||||||||| || ||||||||||||    
T  52734803 tataagttgttttcataagctatcatgaagaacatat 52734839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 313
Target Start/End: Original strand, 27541 - 27602
Alignment:
Q  249 aagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagctctcttg 313  Q
    |||||||||||||||||||||||||| |||| |    ||||||||||||||||||| || |||||    
T  27541 aagataaaataaagtcaaattgttttcatataa---actataagttgttttcataaactatcttg 27602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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