View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19393_low_7 (Length: 359)
Name: NF19393_low_7
Description: NF19393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19393_low_7 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 54689299 - 54688941
Alignment:
| Q |
1 |
cttgctagaataataaacatattggacaaaacacctcaactcctagcctatgaggaagtcaatggtatccattgacgttaacatatgtttaaatgggtga |
100 |
Q |
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| T |
54689299 |
cttgctagaataataaacatattgaacaaaacacctcaactcctagcctatgaggaagtcaatggtatccattgatgttaacatatgtttaaatgggtga |
54689200 |
T |
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| Q |
101 |
tctgattcgtgttcctccaacagagacatgcctaacaatactgcagttgttgctttggcatcacagcagtactacacatgtgcaaatggttatgtttaca |
200 |
Q |
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| T |
54689199 |
tctgattcgtgttcctccaacagagacatgcctaacaatactgcagttgttgctttggcatcacagcagtactacacatgtgcaaatggttatgtttacg |
54689100 |
T |
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| Q |
201 |
attaaaaacacgttttcggtgaagcatctgtattgaaaatgttataatcatgcaaatgagacagattatgagttggggagattccttnnnnnnnacaagg |
300 |
Q |
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| T |
54689099 |
attaaaaacacgttttcggtgaagcatctgtattgaaaatgttataatcatgcaaatgagacagattatgagttggggagattccttgggggagacaagg |
54689000 |
T |
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| Q |
301 |
ctctaacatttatgtaattatgtctgaatccaaatctggattagttggcctctctgata |
359 |
Q |
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| T |
54688999 |
ctctaacatttatgtaattatgtctgaatccaaatctggattagttggcctctctgata |
54688941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 148 - 352
Target Start/End: Complemental strand, 54701101 - 54700895
Alignment:
| Q |
148 |
tgttgctttggcatcacagcagt--actacacatgtgcaaatggttatgtttacaattaaaaacacgtttt-cggtgaagcatctgtattgaaaatgtta |
244 |
Q |
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| T |
54701101 |
tgttgctttagcatcacagcagagaactaaacatgtgcaaatggttatatttaagattaaaa-cacatttttcggtgaagcatttgcattgaaaatgtta |
54701003 |
T |
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| Q |
245 |
taatcatgcaaatgagacagattatgagttggggagattccttnnnnnnnacaaggctctaacatttatgtaattatgtctgaatccaaatctggattag |
344 |
Q |
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| T |
54701002 |
taatcatgcaaatgagacagagtatgagttggggagattccttgggggagacaaggctctaacatttatgtaattatgtctgaatccaaatctggattag |
54700903 |
T |
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| Q |
345 |
ttggcctc |
352 |
Q |
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| T |
54700902 |
ttggcctc |
54700895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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