View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19394_high_1 (Length: 554)
Name: NF19394_high_1
Description: NF19394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19394_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 15 - 433
Target Start/End: Original strand, 43560872 - 43561291
Alignment:
| Q |
15 |
aatataaaccttaacattgttaccacccacattatgaataacgttcaccttgaaccacctattatagatatttggagacagaacaggacccctataataa |
114 |
Q |
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| T |
43560872 |
aatataaaccttaacattgttagcacccacattatgaataacgttcaccttgaaccacctattatagatatttggagacagaacaggatccctataataa |
43560971 |
T |
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| Q |
115 |
tttaatgaaccatcatagaccctaagctgtgaggttgtcgaagtaggatttgcaccaaacacttgcataatacacactcctgatgtgccccctggaacat |
214 |
Q |
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| T |
43560972 |
tttaatgaaccatcatagaccctaagctgtgaggttgtcgaagtaggatttgcaccaaacacttgcataatacacactcctgatgtgccccctggaacat |
43561071 |
T |
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| Q |
215 |
aaccctgcccttcaaattgccatacaccagatgtataatcgtacccctgcaatgatttcagacacataaaattgattttgacatatttgagtgatggtga |
314 |
Q |
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| T |
43561072 |
aaccctgcccttcaaattgccatacaccagatgtataatcgtacccctgcaatgatttcagacacataaaattgattttgacatatttgagtgatggtga |
43561171 |
T |
|
| Q |
315 |
tgatattgtctctagaac-nnnnnnnnagcaaaattgtcttcagaacttattgtaacttgaaactataatttgtaaaagtttttgattggtttttacact |
413 |
Q |
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| T |
43561172 |
tgatattgtctctagaactttttttttagcaaaattgtcttcagaacttattgtaacttgaaactataatttgtaaaagtttttgattggtttttacact |
43561271 |
T |
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| Q |
414 |
taaattattattgaacccac |
433 |
Q |
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| T |
43561272 |
taaattattattgaacccac |
43561291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 489 - 536
Target Start/End: Original strand, 43561347 - 43561394
Alignment:
| Q |
489 |
tcatcgtagaatcaaacacgcacttaccctaatacgaatctcggttct |
536 |
Q |
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| T |
43561347 |
tcatcgtagaatcaaacacgcacttaccctaatacgaatctcggttct |
43561394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 304
Target Start/End: Complemental strand, 49330592 - 49330556
Alignment:
| Q |
268 |
gatttcagacacataaaattgattttgacatatttga |
304 |
Q |
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| T |
49330592 |
gatttcagacatttaaaattgattttgacatatttga |
49330556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 310
Target Start/End: Complemental strand, 21743906 - 21743865
Alignment:
| Q |
267 |
tgatttcagacacataaaattgattttgacatatttgagtgatg |
310 |
Q |
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| T |
21743906 |
tgatttcagacacataaaattgattttg--atatttgagtgatg |
21743865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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