View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19394_low_3 (Length: 308)
Name: NF19394_low_3
Description: NF19394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19394_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 1671976 - 1672267
Alignment:
| Q |
1 |
agaatcagttgcataatcttcaaacaaaagaaacaacatcatacattaaaaaagaacaaatttttaagaaacttacatgtttatgatgaaattgagaatg |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1671976 |
agaatcagttacataatcttcaaacaaaagaaacaacatcatacattaaaaaagaacaaatttttaagaaacttacatgtttatgatcaaattgagaatg |
1672075 |
T |
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| Q |
101 |
atgggttggtggagtttggtaagagcaacgagtagtgaaacttctactaaatcctccaacattggtattgaaaaatggataattaagactcttagagtga |
200 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1672076 |
atgggttggtggagtttgataagagcaacgagtagtgaaacttctactaaatcctccaacattggtattcaaaaatggataattaagactcttagagtga |
1672175 |
T |
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| Q |
201 |
ttattagagtgaaacaaaatgggtgtagttgcaaagttggagcaatagtgacgaggaatgatggatgatgccattgaaggtagagagaaaga |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1672176 |
ttattagagtgaaacaaaatgggtgtagttgcaaagttggagcaatagtgacgaggaatgatggatgatgccattgaaggtagagagaaaga |
1672267 |
T |
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