View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19394_low_4 (Length: 276)
Name: NF19394_low_4
Description: NF19394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19394_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 40404663 - 40404908
Alignment:
| Q |
11 |
caaagggtatacatatttcttttaagctcataaataagtttacactaattttaaaattgtactaattaatttgnnnnnnnnncatttctcacagctttca |
110 |
Q |
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| T |
40404663 |
caaagggtatacatatttcttttaagctcataaataagtttacactaattttaaaattgtactaatttattt----ttttttcatttctcacagctttca |
40404758 |
T |
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| Q |
111 |
accataaaactacttctcttgctgaatgtgtttgggtttggagccatgcttctatcaactctctacctttcaaagggagcaaaacgtcttgctatcattg |
210 |
Q |
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| T |
40404759 |
accataaaactacttctcttgctgaatgtgtttgggtttggagccatgcttctatcaactctctacctttcaaagggagcaaaacgtcttgctatcattg |
40404858 |
T |
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| Q |
211 |
gatggatttgccttgttttcaacataagtgtatttgctgcacctctcttc |
260 |
Q |
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| T |
40404859 |
gatggatttgccttgttttcaacataagtgtatttgctgcacctctcttc |
40404908 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 259
Target Start/End: Original strand, 45318010 - 45318088
Alignment:
| Q |
181 |
caaagggagcaaaacgtcttgctatcattggatggatttgccttgttttcaacataagtgtatttgctgcacctctctt |
259 |
Q |
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| T |
45318010 |
caaagggatccaaacgtctttctattattggatggatatgtatggtttttaacatatgtgtatttgcttctcctctctt |
45318088 |
T |
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