View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19394_low_5 (Length: 238)
Name: NF19394_low_5
Description: NF19394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19394_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 18542148 - 18542278
Alignment:
| Q |
1 |
agtttgtgaaatagaagaattcaaattaaaagtttcatggagacccccgggtggaagttggacaagccatggagtaaaaggaaagggtggtaaaggagga |
100 |
Q |
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| T |
18542148 |
agtttgtgaaatagaagaattcaaattaaaagtttcatggagacccccgggtggaagttggacaagccatggagtaaaaggaaagggtggtaaaggagga |
18542247 |
T |
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| Q |
101 |
tcaaaaggtggatcaagcacaggaggaaatg |
131 |
Q |
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| T |
18542248 |
tcaaaaggtggatcaggcacaggaggaaatg |
18542278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 73 - 131
Target Start/End: Original strand, 18555277 - 18555335
Alignment:
| Q |
73 |
agtaaaaggaaagggtggtaaaggaggatcaaaaggtggatcaagcacaggaggaaatg |
131 |
Q |
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| T |
18555277 |
agtaaaaggaaagggtggtaaaggaggatcaaaaggtggatcaggcacaggaggaaatg |
18555335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 69 - 115
Target Start/End: Original strand, 18550295 - 18550341
Alignment:
| Q |
69 |
atggagtaaaaggaaagggtggtaaaggaggatcaaaaggtggatca |
115 |
Q |
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| T |
18550295 |
atggagtaaaaggaaatggtggtaaaggaggatcaaagggtggatca |
18550341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 18550227 - 18550267
Alignment:
| Q |
1 |
agtttgtgaaatagaagaattcaaattaaaagtttcatgga |
41 |
Q |
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| T |
18550227 |
agttggtgaaatagaagaattcaaatcaaaagtttcatgga |
18550267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 18555205 - 18555245
Alignment:
| Q |
1 |
agtttgtgaaatagaagaattcaaattaaaagtttcatgga |
41 |
Q |
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| T |
18555205 |
agttggtgaaatagaagaattcaaatcaaaagtttcatgga |
18555245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 149 - 220
Target Start/End: Original strand, 31585170 - 31585241
Alignment:
| Q |
149 |
cctgtggcacctgtaacacagtatttggcagtaggaacaatttgtccactgcttctaaccatcctcattgct |
220 |
Q |
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| T |
31585170 |
cctgtggcacctgtaacacagtatttggcagtaggaacaatttgtccactgcttctcaccatcctcattgct |
31585241 |
T |
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