View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19394_low_7 (Length: 217)

Name: NF19394_low_7
Description: NF19394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19394_low_7
NF19394_low_7
[»] chr1 (1 HSPs)
chr1 (13-201)||(47522454-47522642)
[»] chr7 (1 HSPs)
chr7 (111-201)||(6896853-6896943)
[»] chr5 (4 HSPs)
chr5 (113-201)||(26714616-26714705)
chr5 (144-201)||(26714896-26714953)
chr5 (113-201)||(26984355-26984444)
chr5 (144-201)||(26984635-26984692)
[»] chr2 (1 HSPs)
chr2 (123-170)||(13274771-13274818)


Alignment Details
Target: chr1 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 47522454 - 47522642
Alignment:
Q  13 ttttgttaatcacattgtttattcaaatcaccgccgcaacaacaaccgtaaaaagcgaggatgaatcaaaaacaaaaccactagtgaaatactcacgcgg 112  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||    
T  47522454 ttttgttaatcacattggttattctaatcaccgccgcaacaacaaccgtaaaaagcgaggatgaatcaaaaacaaaactactagtgaaatactcacacgg 47522553  T
Q  113 aaagaagtattgtgacaaaggttgggaatgtaaaggttggtcgatttattgttgcaatttaaccataactgattatcttcaaacctatc 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47522554 aaagaagtattgtgacaaaggttgggaatgtaaaggttggtcgatttattgttgcaatttaaccataactgattatcttcaaacctatc 47522642  T

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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 111 - 201
Target Start/End: Complemental strand, 6896943 - 6896853
Alignment:
Q  111 ggaaagaagtattgtgacaaaggttgggaatgtaaaggttggtcgatttattgttgcaatttaaccataactgattatcttcaaacctatc 201  Q
    ||||| ||||| ||||| ||||| |||||||||||||| ||||| || |||||||| |||||||| |||||||||||| ||||||||||||    
T  6896943 ggaaaaaagtactgtgataaaggatgggaatgtaaaggatggtcaatatattgttgtaatttaacaataactgattattttcaaacctatc 6896853  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 201
Target Start/End: Complemental strand, 26714705 - 26714616
Alignment:
Q  113 aaagaagtattgtgacaaaggttgggaatgtaaaggttggtcgatttattgttgcaa-tttaaccataactgattatcttcaaacctatc 201  Q
    ||||||||||||||| ||||| ||||||||||||||||||| ||||| | |||| || |||||| ||||| | |||| ||||||| ||||    
T  26714705 aaagaagtattgtgaaaaaggctgggaatgtaaaggttggttgatttttcgttgtaattttaacgataaccggttattttcaaacatatc 26714616  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 26714896 - 26714953
Alignment:
Q  144 aaaggttggtcgatttattgttgcaatttaaccataactgattatcttcaaacctatc 201  Q
    ||||||||||||||||||| ||  |||||||| |||||||||||| ||||||||||||    
T  26714896 aaaggttggtcgatttattatttaaatttaacgataactgattattttcaaacctatc 26714953  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 201
Target Start/End: Complemental strand, 26984444 - 26984355
Alignment:
Q  113 aaagaagtattgtgacaaaggttgggaatgtaaaggttggtcgatttattgttgcaa-tttaaccataactgattatcttcaaacctatc 201  Q
    ||||||||||||||| ||||| ||||||||||||||||||| ||||| | |||| || |||||| ||||| | |||| ||||||| ||||    
T  26984444 aaagaagtattgtgaaaaaggctgggaatgtaaaggttggttgatttttcgttgtaattttaacgataaccggttattttcaaacatatc 26984355  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 26984635 - 26984692
Alignment:
Q  144 aaaggttggtcgatttattgttgcaatttaaccataactgattatcttcaaacctatc 201  Q
    ||||||||||||||||||| ||  |||||||| |||||||||||| ||||||||||||    
T  26984635 aaaggttggtcgatttattatttaaatttaacgataactgattattttcaaacctatc 26984692  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 170
Target Start/End: Original strand, 13274771 - 13274818
Alignment:
Q  123 tgtgacaaaggttgggaatgtaaaggttggtcgatttattgttgcaat 170  Q
    ||||||||||| ||||||||||||||||||||  | ||||||||||||    
T  13274771 tgtgacaaagggtgggaatgtaaaggttggtcagtgtattgttgcaat 13274818  T

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