View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19395_high_1_N (Length: 475)
Name: NF19395_high_1_N
Description: NF19395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19395_high_1_N |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 475
Target Start/End: Complemental strand, 32681665 - 32681181
Alignment:
| Q |
1 |
aacaacaagtagcaacactcttccaagatgataaagacaaattcaacnnnnnnnnta-tatcagaaaaatcaaggaacttagaagaaatctatttgaccc |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| || |
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| T |
32681665 |
aacaacaagtagcaacactcttccaagatgataaagacaaattcaacaaaaaaaaaaatatcagaaaaatcaaggaacttagaagaaatctatttgaacc |
32681566 |
T |
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| Q |
100 |
atttggcggaaaatcaaaacccagttcttgaattcctccaaaaatttgaattgaatttttggaggaatcaaaagatgggttgaattcaaaacagaggaaa |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32681565 |
atttggcggaaaatcaaaacccagttcttgaattcctccaaaaatttgaattgaatttttggaggaatcaaaagatgggttgaattcaaaacagaggaaa |
32681466 |
T |
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| Q |
200 |
aacaggggaaacagaacagaatgaaaatgaaactgaagattgaagggtagtgagagaatttgtatggttgaaaattgcaaagtgaaaagaatccacaaca |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32681465 |
aacaggggaaacagaacagaatgaaaatgaaactgaagattgaagggtagtgagagaatttgtatggttgaaaattgcaaagtgaaaagaatccacaaca |
32681366 |
T |
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| Q |
300 |
agaatctgaattgattcacggaagagtaacacacacaggg-------ttgagacggaacagaacacaagtttctcaaattttaagaaggga--nnnnnnn |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32681365 |
agaatctgaattgattcacggaagagtaacacacacagggttgacagttgagacggaacagaacacaagtttctcaaattttaagaagggattttttttt |
32681266 |
T |
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| Q |
391 |
nnnnnnnnnnnnaccacaggatctaaatatgaaggatcaaacaaagattttcatagaatacaacaaaacaaaatggtgatgatga |
475 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32681265 |
atatttttttttaccacaggatctaaatatgaaggatcaaacaaagattttcatagaatacaacaaaacaaaatggtgatgatga |
32681181 |
T |
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