View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19395_high_8 (Length: 344)
Name: NF19395_high_8
Description: NF19395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19395_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 9 - 313
Target Start/End: Complemental strand, 31949915 - 31949609
Alignment:
| Q |
9 |
agcaaaggaccccacataatcaacagtgctaattctttcagaaaagctgctcaaatcgataagacggaccattttcgccaatgcctatagatggaggcaa |
108 |
Q |
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| T |
31949915 |
agcaaaggaccccacataatcaacactgctaattctttcagaaaagctgctcaaatcgataagacggaccattttcaccaatgcctatagatggaggcaa |
31949816 |
T |
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| Q |
109 |
ttttgtcttcaacaccaacattggaggtgcacatagatacacaaccttattgctatctgctcccgtgaaaccaagtttgatctttattcctgccatcaac |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
31949815 |
ttttgtcttcaacaccaacattggaggtgcacatagatacacaaccttattgctatctgctcccgtgacaccaagtttgatctttattcctgccatcaac |
31949716 |
T |
|
| Q |
209 |
ttacgggcgttg--cacagaggtggccgctcaccagaaaatacacaagacaaatcttgatcatgacagaaatccataaccaatttccaaatagcttctga |
306 |
Q |
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|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31949715 |
ttacgggcgttgcacacagaggtggccactcaccagaaaatacacaagacaaatcttgatcatgacagaaatccataaccaatttccaaatagcttctga |
31949616 |
T |
|
| Q |
307 |
ttgtaat |
313 |
Q |
| |
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||||||| |
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| T |
31949615 |
ttgtaat |
31949609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 141
Target Start/End: Original strand, 29707501 - 29707581
Alignment:
| Q |
61 |
aaatcgataagacggaccattttcgccaatgcctatagatggaggcaattttgtcttcaacaccaacattggaggtgcaca |
141 |
Q |
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| T |
29707501 |
aaattgataagatggaccatttcctccagtgcttgcagatggaggcatttttgttctcagcaccaacattggaggcgcaca |
29707581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 37 - 258
Target Start/End: Original strand, 27510027 - 27510248
Alignment:
| Q |
37 |
ctaattctttcagaaaagctgctcaaatcgataagacggaccattttcgccaatgcctatagatggaggcaattttgtcttcaacaccaacattggaggt |
136 |
Q |
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||||||||| |||||| ||||| |||| ||||||| ||||||||||| ||||||| | ||||||||||| |||||| ||| ||||||||||||||| |
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| T |
27510027 |
ctaattcttccagaaatactgcttaaattgataagatggaccattttctccaatgcttgcagatggaggcatttttgttctcagcaccaacattggaggc |
27510126 |
T |
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| Q |
137 |
gcacatagatacacaaccttattgctatctgctcccgtgaaaccaagtttgatctttattcctgccatcaacttacgggcgttgcacagaggtggccgct |
236 |
Q |
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||||| ||||| |||||| ||||| || |||||||||||| ||| | |||||||||| |||| | ||||||||||| ||| |||||| | | ||| | |
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| T |
27510127 |
gcacaaagatagacaaccctattgttagctgctcccgtgacacctaatttgatctttgctccttcaatcaacttacgcgcgctgcacaatgcttgccatt |
27510226 |
T |
|
| Q |
237 |
caccagaaaatacacaagacaa |
258 |
Q |
| |
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|||||||||| ||||| ||||| |
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| T |
27510227 |
caccagaaaaaacacatgacaa |
27510248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 295
Target Start/End: Complemental strand, 27271379 - 27271113
Alignment:
| Q |
37 |
ctaattctttcagaaaagctgctcaaatcgataagacggaccattttcgccaatgcctatagatggaggcaattttgtcttcaacaccaacattggaggt |
136 |
Q |
| |
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||||||||| |||||| |||| |||| ||||||| ||||||||| | ||| ||| | |||||||||| |||||| ||||||||||||||||||| |
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| T |
27271379 |
ctaattcttccagaaatagtgcttaaattgataagatggaccatttcctccagtgcttgctgatggaggcatttttgttctcaacaccaacattggaggc |
27271280 |
T |
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| Q |
137 |
gcacatagatacacaacctt--------attgctatctgctcccgtgaaaccaagtttgatctttattcctgccatcaacttacgggcgttgcacagagg |
228 |
Q |
| |
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||||| |||| |||||| | |||| || |||||||||||| ||| | |||||| ||| |||| | ||||||||||| |||||||||| | |
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| T |
27271279 |
gcacaatgatagacaaccctatgtccccattgttagctgctcccgtgacacctaatttgatatttgctccttcaatcaacttacgcgcgttgcacaatgt |
27271180 |
T |
|
| Q |
229 |
tggccgctcaccagaaaatacacaagacaaatcttgatcatgacagaaatccataaccaatttccaa |
295 |
Q |
| |
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| ||| ||||||||||| |||| |||| | || || ||||||||| ||||||| ||| |||||| |
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| T |
27271179 |
ttgccattcaccagaaaaatcacatgacagctgttcattatgacagaattccataaacaacttccaa |
27271113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 37 - 295
Target Start/End: Complemental strand, 39210906 - 39210648
Alignment:
| Q |
37 |
ctaattctttcagaaaagctgctcaaatcgataagacggaccattttcgccaatgcctatagatggaggcaattttgtcttcaacaccaacattggaggt |
136 |
Q |
| |
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||||||||| |||||| ||||| |||| ||||||| ||||||||||| ||||||| | ||||||||||| |||||| ||| ||||||||||||||| |
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| T |
39210906 |
ctaattcttccagaaatactgcttaaattgataagatggaccattttctccaatgcttgcagatggaggcatttttgttctcagcaccaacattggaggc |
39210807 |
T |
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| Q |
137 |
gcacatagatacacaaccttattgctatctgctcccgtgaaaccaagtttgatctttattcctgccatcaacttacgggcgttgcacagaggtggccgct |
236 |
Q |
| |
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||||| ||||| |||||| ||||| || ||||||| |||| ||| | |||||||||| |||| | ||||||||| | ||| |||||| | | ||| | |
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| T |
39210806 |
gcacaaagatagacaaccctattgttagctgctcctgtgacacctaatttgatctttgctccttcaatcaacttatgcgcgctgcacaatgcttgccatt |
39210707 |
T |
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| Q |
237 |
caccagaaaatacacaagacaaatcttgatcatgacagaaatccataaccaatttccaa |
295 |
Q |
| |
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|||||||||| ||||| ||||| || ||||||||| |||||| ||| ||| |||||| |
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| T |
39210706 |
caccagaaaaaacacatgacaaccgttcatcatgacaaaaatccgtaaacaacttccaa |
39210648 |
T |
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