View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19395_high_9 (Length: 336)
Name: NF19395_high_9
Description: NF19395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19395_high_9 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 34 - 336
Target Start/End: Original strand, 33441612 - 33441918
Alignment:
| Q |
34 |
agcaaataatttcaataactctcatgacttttattaatcatcaataacaagatgatattacattcacca----aagcaaataacataaataataatgaag |
129 |
Q |
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| T |
33441612 |
agcaaataatctcaatgcctctcatgggttttattaatcataaataacaaaatgatattacattcaccaatgtaaacaaactaaataaataataatgaag |
33441711 |
T |
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| Q |
130 |
ggggctaattattagtaataactaactggggaaaaaacagcctctccttgaaacatcacgcatgatcggttaacatccaatcttaaacagctatcaatct |
229 |
Q |
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| T |
33441712 |
ggggctaattattagtaataactaactgggaaaaaaacagcctctccttgaaacatcacacatgatcggttaacatccaatcttaaacagctatcaatct |
33441811 |
T |
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| Q |
230 |
ctgttaaatatttggaaaagcttctttggcagcacggatcgacggggaacgccactagcaggccatggtgcattcgaaggcggtgcttcaggtgtcacca |
329 |
Q |
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| T |
33441812 |
ctgttaaatatttggaaaagcttctttggcagcagggatcgacggggaacgctactagcaggccatggtgcattcgaaggcggtgcttcaggtgtcacca |
33441911 |
T |
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| Q |
330 |
ggtcaag |
336 |
Q |
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||||||| |
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| T |
33441912 |
ggtcaag |
33441918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 34 - 336
Target Start/End: Original strand, 33451832 - 33452138
Alignment:
| Q |
34 |
agcaaataatttcaataactctcatgacttttattaatcatcaataacaagatgatattacattcacca----aagcaaataacataaataataatgaag |
129 |
Q |
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|||||||||| ||||| |||||||| ||||||||||||| |||||||| |||||||||||||||||| || |||| | |||||||||||||||| |
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| T |
33451832 |
agcaaataatctcaatgcctctcatgggttttattaatcataaataacaaaatgatattacattcaccaatgtaaacaaactaaataaataataatgaag |
33451931 |
T |
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| Q |
130 |
ggggctaattattagtaataactaactggggaaaaaacagcctctccttgaaacatcacgcatgatcggttaacatccaatcttaaacagctatcaatct |
229 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
33451932 |
ggggctaattattagtaataactaactgggaaaaaaacagcctctccttgaaacatcacacatgatcggttaacatccaatcttaaacagctatcaatct |
33452031 |
T |
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| Q |
230 |
ctgttaaatatttggaaaagcttctttggcagcacggatcgacggggaacgccactagcaggccatggtgcattcgaaggcggtgcttcaggtgtcacca |
329 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33452032 |
ctgttaaatatttggaaaagcttctttggcagcagggatcgacggggaacgctactagcaggccatggtgcattcgaaggcggtgcttcaggtgtcacca |
33452131 |
T |
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| Q |
330 |
ggtcaag |
336 |
Q |
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||||||| |
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| T |
33452132 |
ggtcaag |
33452138 |
T |
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