View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19395_low_1 (Length: 698)

Name: NF19395_low_1
Description: NF19395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19395_low_1
NF19395_low_1
[»] chr3 (1 HSPs)
chr3 (1-673)||(29488340-29489012)


Alignment Details
Target: chr3 (Bit Score: 563; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 1 - 673
Target Start/End: Original strand, 29488340 - 29489012
Alignment:
Q  1 atgatcatttgatagtaattataagttgttgtagtagctatacgtttgatagtaattataaatgatgaatatgatcatcaatcaaatggccattgttttn 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  29488340 atgatcatttgatagtaattataagttgttgtagtagctatacgtttgatagtaattataaatgatgaatatgatcattaatcaaatggccattgttttg 29488439  T
Q  101 nnnnnnnnnngataaaagatatagtagtgcagttgtttgtaatctaccctttacatccattttcaaacaacataagacattttagtgcaccacataagta 200  Q
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29488440 aaaaaagaaagataaaagatatagtagtgcagttgtttgtaatctaccctttacatccattttcaaacaacataagacattttagtgcaccacataagta 29488539  T
Q  201 aatatgaaattatgaatataatataatcctttttgacaaattaaatataagcaacacactagcgtccaatgaattctaagtagcatacatttctagagac 300  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  29488540 aatatgaaattatgaatataatataatcttttttgacaaattaaatataagcaacacaatagcgtccaatgaattctaagtagcatacatttctagcgac 29488639  T
Q  301 gttgtttcgaagctaaaatcaaacctatacaatggacactagtagcttcacttcctggggatgctattaataagatttggnnnnnnnagtgtttccttta 400  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||       ||||| |||||||    
T  29488640 gttgtttcgaagctaaaatcaaacgtatacaatggaccctagtagcttcacttcctggggatgctattaataagatttggtttttttagtgtctccttta 29488739  T
Q  401 gagtccatttgatagacgctaatactagtattttcgcatgatgaatgttgcatgttcattgttgaatacataaattatgccacaaaaagttgtcgctatt 500  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29488740 gagtccatttgatggacgctaatactagtattttcgcatgatgaatgttgcatgttcattgttgaatacataaattatgccacaaaaagttgtcgctatt 29488839  T
Q  501 gttttgatatttattcttttaaaatacagaatcaccaactaaacaaaatgacgtcctaaatattagtattcatgcacatgaaatataaatccatcaattc 600  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||    
T  29488840 gttttgatatttatttttttaaaacacagaatcaccaactaaacaaaatgacgttctaaatattaatattcatgcacatcaaatataaatccatcaattc 29488939  T
Q  601 tcaactaaataaaagtaaaacaatttcttataacaataaaggtacaacgtgacgaatcaatgttcgaatatga 673  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  29488940 tcaactaaataaaagtaaaacaatttcttataacaataaaggtacaatgtgacgaatcaatgttcgaatatga 29489012  T

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