View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19396_low_1 (Length: 409)
Name: NF19396_low_1
Description: NF19396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19396_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 10554468 - 10554859
Alignment:
| Q |
1 |
tttattttcaatactatcaaatacatatttttctaggtatgtagccnnnnnnnccattcatcaaattatcgattattttaccattgcgtatttgatttat |
100 |
Q |
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| T |
10554468 |
tttattttcaatactatcaaatacatatttttctaggtatgtagccaaaaaaaccattcatcaatttatcgattattttaccattgcgtatttgatttat |
10554567 |
T |
|
| Q |
101 |
cacaannnnnnnnccaccgggcaacacttgatttttattgcgccataaaagttatttaatactaacttgtagcaaaatgtataaaaaattagtggggaag |
200 |
Q |
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| T |
10554568 |
cacaattttttttccaccgggcaacacttgatttttattgcgccataaaagttatttaatactaacttgtagcaaaatgtataaaaaattagtggggaag |
10554667 |
T |
|
| Q |
201 |
atgctctcaatcatatnnnnnnngattgcgtatttgcgttcagttatcattgatgctctcaattattcttgattcaatgtattgtgtgcacttcatagtc |
300 |
Q |
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| T |
10554668 |
atgctctcaatcatataaaaaaagattgcgtatttgcgttcagttatcattgatgctctcaattattcttgattcaatgtattgtgtgcacttcatagtc |
10554767 |
T |
|
| Q |
301 |
tccacgcttcaaaagattatcgagtttcagcagttgtaggatgcatactaaaatatcatgtttgataacgttttgtttttatttgacctaag |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10554768 |
tccacgcttcaaaagattatcgagtttcagcagttgtaggatgcatactaaaatatcatgtttgataacgttttgtttttatttgacctaag |
10554859 |
T |
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