View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19396_low_2 (Length: 331)

Name: NF19396_low_2
Description: NF19396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19396_low_2
NF19396_low_2
[»] chr3 (24 HSPs)
chr3 (18-233)||(49917638-49917853)
chr3 (242-317)||(39020146-39020221)
chr3 (242-317)||(10206960-10207041)
chr3 (242-317)||(24482950-24483031)
chr3 (242-317)||(49363238-49363319)
chr3 (242-317)||(50206957-50207038)
chr3 (262-317)||(46253651-46253706)
chr3 (263-317)||(11633643-11633697)
chr3 (242-317)||(37508485-37508566)
chr3 (260-317)||(30909056-30909113)
chr3 (265-317)||(390841-390893)
chr3 (242-317)||(39671084-39671166)
chr3 (242-317)||(8821633-8821714)
chr3 (242-317)||(44677471-44677552)
chr3 (242-317)||(36121829-36121905)
chr3 (261-317)||(55400027-55400083)
chr3 (262-317)||(46019491-46019546)
chr3 (275-317)||(24645398-24645440)
chr3 (260-317)||(32767703-32767760)
chr3 (260-317)||(33375887-33375944)
chr3 (260-301)||(48405437-48405478)
chr3 (261-301)||(25641574-25641614)
chr3 (263-307)||(37302575-37302619)
chr3 (260-308)||(55013030-55013078)
[»] chr7 (17 HSPs)
chr7 (230-317)||(43573530-43573623)
chr7 (265-317)||(38779731-38779783)
chr7 (242-317)||(13162922-13163003)
chr7 (242-317)||(19786066-19786147)
chr7 (242-317)||(39231715-39231796)
chr7 (260-317)||(16980324-16980381)
chr7 (260-317)||(29002635-29002692)
chr7 (237-317)||(39331983-39332069)
chr7 (242-317)||(13729729-13729810)
chr7 (242-317)||(21559801-21559882)
chr7 (260-317)||(28036771-28036828)
chr7 (260-317)||(32815195-32815252)
chr7 (262-317)||(44184546-44184601)
chr7 (260-317)||(11564920-11564977)
chr7 (260-301)||(41402534-41402575)
chr7 (260-300)||(13437225-13437264)
chr7 (261-317)||(41893943-41893999)
[»] chr6 (16 HSPs)
chr6 (260-317)||(754425-754482)
chr6 (242-317)||(3610948-3611029)
chr6 (235-317)||(35213548-35213636)
chr6 (260-317)||(13143369-13143426)
chr6 (242-317)||(2075438-2075519)
chr6 (242-317)||(4820254-4820335)
chr6 (242-317)||(30036781-30036862)
chr6 (260-317)||(30152517-30152574)
chr6 (263-311)||(2777309-2777357)
chr6 (261-317)||(11547516-11547572)
chr6 (261-317)||(18141288-18141344)
chr6 (261-317)||(20822855-20822911)
chr6 (265-317)||(34504052-34504104)
chr6 (242-298)||(14986751-14986809)
chr6 (261-301)||(17551382-17551422)
chr6 (223-255)||(23628344-23628376)
[»] chr1 (28 HSPs)
chr1 (236-317)||(36577399-36577486)
chr1 (260-317)||(51191815-51191872)
chr1 (237-317)||(3603109-3603195)
chr1 (237-317)||(35136842-35136928)
chr1 (242-317)||(8411705-8411786)
chr1 (242-317)||(46082108-46082189)
chr1 (260-317)||(9008252-9008309)
chr1 (260-317)||(21340549-21340606)
chr1 (260-311)||(1790535-1790586)
chr1 (242-317)||(756859-756940)
chr1 (242-317)||(902641-902722)
chr1 (242-301)||(1852954-1853019)
chr1 (242-301)||(33024574-33024639)
chr1 (260-317)||(33054075-33054132)
chr1 (260-317)||(50328128-50328185)
chr1 (261-317)||(10890033-10890089)
chr1 (261-317)||(13489690-13489746)
chr1 (261-317)||(32915059-32915115)
chr1 (242-301)||(7128121-7128186)
chr1 (261-311)||(15705055-15705105)
chr1 (263-317)||(20565105-20565159)
chr1 (263-317)||(26837482-26837536)
chr1 (263-317)||(29586023-29586077)
chr1 (263-316)||(4514442-4514495)
chr1 (268-317)||(36779256-36779305)
chr1 (260-301)||(48325994-48326035)
chr1 (261-317)||(47214236-47214292)
chr1 (261-317)||(52362510-52362566)
[»] chr4 (25 HSPs)
chr4 (242-317)||(624299-624380)
chr4 (242-317)||(22819652-22819733)
chr4 (263-317)||(47965769-47965823)
chr4 (260-317)||(46405961-46406018)
chr4 (234-317)||(14451388-14451477)
chr4 (242-317)||(30079849-30079930)
chr4 (242-317)||(39344967-39345048)
chr4 (242-317)||(41486130-41486211)
chr4 (260-301)||(21260325-21260366)
chr4 (260-317)||(47099049-47099106)
chr4 (261-317)||(6141765-6141821)
chr4 (242-317)||(14010105-14010186)
chr4 (260-301)||(5932160-5932201)
chr4 (260-317)||(13086049-13086106)
chr4 (261-317)||(9118851-9118907)
chr4 (236-317)||(26206964-26207051)
chr4 (263-307)||(36111393-36111437)
chr4 (262-317)||(38338909-38338964)
chr4 (242-317)||(14527647-14527728)
chr4 (242-317)||(51887666-51887747)
chr4 (260-317)||(51194296-51194353)
chr4 (261-317)||(23822232-23822288)
chr4 (261-317)||(28458364-28458420)
chr4 (261-317)||(30170007-30170063)
chr4 (265-317)||(53152308-53152360)
[»] chr8 (23 HSPs)
chr8 (260-317)||(7592876-7592933)
chr8 (235-317)||(16872143-16872231)
chr8 (261-317)||(30136002-30136058)
chr8 (262-317)||(7955994-7956049)
chr8 (242-317)||(1633877-1633958)
chr8 (260-317)||(11657987-11658044)
chr8 (235-317)||(16613630-16613718)
chr8 (260-317)||(37783958-37784015)
chr8 (261-317)||(11017833-11017889)
chr8 (261-317)||(40739899-40739955)
chr8 (262-317)||(16327139-16327194)
chr8 (242-301)||(16966788-16966853)
chr8 (261-311)||(34018836-34018886)
chr8 (260-317)||(33589217-33589274)
chr8 (235-317)||(34718111-34718199)
chr8 (261-317)||(4658250-4658306)
chr8 (261-307)||(2730958-2731004)
chr8 (242-317)||(36110141-36110222)
chr8 (242-317)||(41520971-41521052)
chr8 (260-301)||(32847690-32847731)
chr8 (260-301)||(34490160-34490201)
chr8 (261-317)||(12707177-12707233)
chr8 (263-307)||(37449423-37449467)
[»] chr5 (19 HSPs)
chr5 (260-317)||(21064213-21064270)
chr5 (242-317)||(4430923-4431004)
chr5 (242-317)||(35098992-35099073)
chr5 (263-317)||(43441768-43441822)
chr5 (242-317)||(5042251-5042332)
chr5 (242-317)||(8267807-8267888)
chr5 (242-317)||(8675420-8675501)
chr5 (242-317)||(18842308-18842389)
chr5 (242-317)||(2688973-2689045)
chr5 (260-317)||(15267811-15267868)
chr5 (261-317)||(6517740-6517796)
chr5 (262-301)||(16437568-16437607)
chr5 (242-317)||(9977122-9977203)
chr5 (260-317)||(5821599-5821656)
chr5 (262-311)||(6446511-6446560)
chr5 (260-317)||(6931046-6931103)
chr5 (260-317)||(33620635-33620692)
chr5 (261-317)||(10649463-10649519)
chr5 (261-317)||(20770159-20770215)
[»] scaffold0687 (1 HSPs)
scaffold0687 (263-317)||(2227-2281)
[»] scaffold0321 (1 HSPs)
scaffold0321 (242-317)||(19639-19720)
[»] chr2 (16 HSPs)
chr2 (242-317)||(13347802-13347883)
chr2 (242-317)||(35589374-35589455)
chr2 (260-317)||(39213757-39213814)
chr2 (260-317)||(39449294-39449351)
chr2 (242-301)||(18176943-18177008)
chr2 (242-317)||(36802899-36802980)
chr2 (261-317)||(6999055-6999111)
chr2 (242-301)||(17779394-17779454)
chr2 (260-316)||(29684600-29684656)
chr2 (242-317)||(37257452-37257534)
chr2 (275-317)||(9634423-9634465)
chr2 (260-301)||(12889835-12889876)
chr2 (260-317)||(16677699-16677756)
chr2 (242-301)||(4758642-4758706)
chr2 (261-317)||(6170658-6170714)
chr2 (263-307)||(41042283-41042327)
[»] scaffold0221 (1 HSPs)
scaffold0221 (261-311)||(8242-8292)
[»] scaffold0471 (1 HSPs)
scaffold0471 (242-317)||(10-91)
[»] scaffold0449 (1 HSPs)
scaffold0449 (261-317)||(9231-9287)


Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 49917638 - 49917853
Alignment:
Q  18 aaaaatcttgagatttagattcttttgttggataccaaaattgtaaaatcaacaattcttcatgcaaagttgataacgtttgagatcaacaaagcaaaca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49917638 aaaaatcttgagatttagattcttttgttggataccaaaattgtaaaatcaacaattcttcatgcaaagttgataacgtttgagatcaacaaagcaaaca 49917737  T
Q  118 aaaattggttaattaaacaattcagaaatatgagagatttttcattggctttgcattggaaaagatttgaatgttacagcgccacgatttggtgtgcatg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49917738 aaaattggttaattaaacaattcagaaatatgagagatttttcattggctttgcattggaaaagatttgaatgttacagcgccacgatttggtgtgcatg 49917837  T
Q  218 cattgttattattatt 233  Q
    ||||||||||||||||    
T  49917838 cattgttattattatt 49917853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 39020221 - 39020146
Alignment:
Q  242 aaatgatatttgaacatcgtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    |||||||||||||||||   |||||||||| ||| |||||||||||||||| ||||||||| |||||||| |||||    
T  39020221 aaatgatatttgaacattcagacaacttttacaataactttttctctcatactcacattactttttactttatctc 39020146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 10207041 - 10206960
Alignment:
Q  242 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||      ||||||||||||||||||||||| ||||||||| ||||||||| |||||||| |||||    
T  10207041 aaatgatatttgaacatccatttagtgacaacttttgcaacaactttctctctcatactcacattactttttactttatctc 10206960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 24483031 - 24482950
Alignment:
Q  242 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||      ||||||||||||||||||||||| ||||||||| ||||||||| |||||||| |||||    
T  24483031 aaatgatatttgaacatccattttgtgacaacttttgcaacaactttctctctcatactcacattactttttactttatctc 24482950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 49363319 - 49363238
Alignment:
Q  242 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||      ||||||||||||||||||||||| ||||||||| ||||||||| |||||||| |||||    
T  49363319 aaatgatatttgaacatccatttagtgacaacttttgcaacaactttctctctcatactcacattactttttactttatctc 49363238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 50207038 - 50206957
Alignment:
Q  242 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||      ||||||||||||||||||||||| ||||||||| ||||||||| |||||||| |||||    
T  50207038 aaatgatatttgaacatccattttgtgacaacttttgcaacaactttctctctcatactcacattactttttactttatctc 50206957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 262 - 317
Target Start/End: Original strand, 46253651 - 46253706
Alignment:
Q  262 gacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||| ||||||||||||| ||||||||| |||||||| |||||    
T  46253651 gacaacttttgcaacaattttttctctcatactcacattactttttactttatctc 46253706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 317
Target Start/End: Original strand, 11633643 - 11633697
Alignment:
Q  263 acaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    |||||||||||||||||||| ||||||||| ||||||||| |||||||| |||||    
T  11633643 acaacttttgcaacaactttctctctcatattcacattactttttactttatctc 11633697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 37508566 - 37508485
Alignment:
Q  242 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||      |||| |||||||||||||||||| ||||||||| ||||||||| |||||||| |||||    
T  37508566 aaatgatatttgaacatccatttagtgataacttttgcaacaactttctctctcatactcacattactttttactttatctc 37508485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 317
Target Start/End: Original strand, 30909056 - 30909113
Alignment:
Q  260 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||||||| ||||| ||| ||||||||| |||||||| |||||    
T  30909056 gtgacaacttttgcaacaactttctctcttatattcacattactttttactttatctc 30909113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 265 - 317
Target Start/End: Original strand, 390841 - 390893
Alignment:
Q  265 aacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    |||||||||||||||||||||||||||| ||||||||  |||||||| |||||    
T  390841 aacttttgcaacaactttttctctcatactcacattattttttactttatctc 390893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 39671166 - 39671084
Alignment:
Q  242 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctc-tcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||      ||||||||||||||||||||||| |||| ||||| ||||||||| |||||||| |||||    
T  39671166 aaatgatatttgaacatctatttagtgacaacttttgcaacaactttctctcttcatactcacattactttttactttatctc 39671084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 317
Target Start/End: Original strand, 8821633 - 8821714
Alignment:
Q  242 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||      ||||||||||||| ||||||||| ||||||||| ||||||||  |||||||| |||||    
T  8821633 aaatgatatttgaacatctatttagtgacaacttttgtaacaactttctctctcatactcacattattttttactttatctc 8821714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 44677552 - 44677471
Alignment:
Q  242 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||      ||||||||||||||||||| ||| ||||||||| ||||||||  |||||||| |||||    
T  44677552 aaatgatatttgaacatccatttagtgacaacttttgcaacaattttctctctcatactcacattattttttactttatctc 44677471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 317
Target Start/End: Original strand, 36121829 - 36121905
Alignment:
Q  242 aaatgatatttgaacatcg-tgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    |||||||||||||||||   |||||||||||||||||||||| | ||| ||| |||| |||| |||||||| |||||    
T  36121829 aaatgatatttgaacataaatgacaacttttgcaacaactttctttcttatactcacgttactttttactttatctc 36121905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 317
Target Start/End: Original strand, 55400027 - 55400083
Alignment:
Q  261 tgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||  |||||||| ||||||||| ||||||||| |||||||| |||||    
T  55400027 tgacaacttttgtgacaactttctctctcatactcacattactttttactttatctc 55400083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 317
Target Start/End: Original strand, 46019491 - 46019546
Alignment:
Q  262 gacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    |||||||||||  |||||||| ||||||||| ||||||||| |||||||| |||||    
T  46019491 gacaacttttgtgacaactttctctctcatactcacattactttttactttatctc 46019546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 317
Target Start/End: Original strand, 24645398 - 24645440
Alignment:
Q  275 acaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    |||||||||||||||||| ||||||||| |||||||| |||||    
T  24645398 acaactttttctctcatactcacattactttttactttatctc 24645440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 317
Target Start/End: Original strand, 32767703 - 32767760
Alignment:
Q  260 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    |||||||||||||||| || ||| ||||||||| ||||||||  |||||||| |||||    
T  32767703 gtgacaacttttgcaataattttctctctcatactcacattattttttactttatctc 32767760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 317
Target Start/End: Original strand, 33375887 - 33375944
Alignment:
Q  260 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    |||||||||||| |||||| ||| ||||||||| ||||||||  |||||||| |||||    
T  33375887 gtgacaacttttacaacaattttctctctcatactcacattattttttactttatctc 33375944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 301
Target Start/End: Original strand, 48405437 - 48405478
Alignment:
Q  260 gtgacaacttttgcaacaactttttctctcatagtcacatta 301  Q
    ||||||||||||| ||||||||| ||||||||| ||||||||    
T  48405437 gtgacaacttttgtaacaactttctctctcatactcacatta 48405478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 301
Target Start/End: Complemental strand, 25641614 - 25641574
Alignment:
Q  261 tgacaacttttgcaacaactttttctctcatagtcacatta 301  Q
    ||||||||||||| |||||||| ||||||||| ||||||||    
T  25641614 tgacaacttttgctacaactttgtctctcatactcacatta 25641574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 37302575 - 37302619
Alignment:
Q  263 acaacttttgcaacaactttttctctcatagtcacattacctttt 307  Q
    ||||||||||  |||||||| ||||||||| ||||||||||||||    
T  37302575 acaacttttgtgacaactttctctctcatattcacattacctttt 37302619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 308
Target Start/End: Original strand, 55013030 - 55013078
Alignment:
Q  260 gtgacaacttttgcaacaactttttctctcatagtcacattacctttta 308  Q
    |||| |||||||||||||||||| ||||| ||| ||||||||| |||||    
T  55013030 gtgataacttttgcaacaactttctctcttatattcacattacttttta 55013078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 230 - 317
Target Start/End: Complemental strand, 43573623 - 43573530
Alignment:
Q  230 tattattatgacaaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||| ||| ||||||||||||||||||      ||||||||||||||||||||||| ||||||||| ||||||||| |||||||| |||||    
T  43573623 tattattttgagaaatgatatttgaacatctattttgtgacaacttttgcaacaactttctctctcatattcacattactttttactttatctc 43573530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 265 - 317
Target Start/End: Complemental strand, 38779783 - 38779731
Alignment:
Q  265 aacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    |||||||||||||||||||||||||||| ||||||||  ||||||||||||||    
T  38779783 aacttttgcaacaactttttctctcatactcacattattttttacttcatctc 38779731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 317
Target Start/End: Original strand, 13162922 - 13163003
Alignment:
Q  242 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||      ||||||||||||||||||||||| ||||||||| ||| ||||| |||||||| |||||    
T  13162922 aaatgatatttgaacatctatttagtgacaacttttgcaacaactttctctctcatactcatattactttttactttatctc 13163003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 19786147 - 19786066
Alignment:
Q  242 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||      ||||||||||||||||||||||| |||| |||| ||||||||| |||||||| |||||    
T  19786147 aaatgatatttgaacatccatttagtgacaacttttgcaacaactttctctcacatactcacattactttttactttatctc 19786066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 39231796 - 39231715
Alignment:
Q  242 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||      ||||||||||||||||||||||| ||||||||| ||||||||  |||||||| |||||    
T  39231796 aaatgatatttgaacatccagttagtgacaacttttgcaacaactttctctctcatactcacattattttttactttatctc 39231715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 317
Target Start/End: Original strand, 16980324 - 16980381
Alignment:
Q  260 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||||||| ||||| ||| ||||||||| |||||||| |||||    
T  16980324 gtgacaacttttgcaacaactttctctcttatactcacattactttttactttatctc 16980381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 317
Target Start/End: Original strand, 29002635 - 29002692
Alignment:
Q  260 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||||||| |||||| || ||||||||| |||||||| |||||    
T  29002635 gtgacaacttttgcaacaactttctctctcgtaatcacattactttttactttatctc 29002692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 317
Target Start/End: Original strand, 39331983 - 39332069
Alignment:
Q  237 atgacaaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    |||| ||||||||||||||||||      ||||||||||||| ||||||||| ||||| ||| ||||||||| |||||||| |||||    
T  39331983 atgagaaatgatatttgaacatccatttagtgacaacttttgtaacaactttctctcttatactcacattactttttactttatctc 39332069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 317
Target Start/End: Original strand, 13729729 - 13729810
Alignment:
Q  242 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||      ||||||||||||||||||||||| | ||||||| ||||||||  |||||||| |||||    
T  13729729 aaatgatatttgaacatccattttgtgacaacttttgcaacaactttctttctcatactcacattattttttactttatctc 13729810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 317
Target Start/End: Original strand, 21559801 - 21559882
Alignment:
Q  242 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||      |||||||||||||| |||||||| ||||||||| ||||||||  |||||||| |||||    
T  21559801 aaatgatatttgaacatccattctgtgacaacttttgctacaactttatctctcatactcacattattttttactttatctc 21559882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 317
Target Start/End: Original strand, 28036771 - 28036828
Alignment:
Q  260 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||||||| ||||| ||| ||||||||  |||||||| |||||    
T  28036771 gtgacaacttttgcaacaactttctctcttatactcacattattttttactttatctc 28036828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 317
Target Start/End: Original strand, 32815195 - 32815252
Alignment:
Q  260 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||| ||||||||||| ||||||||||||| ||||||||  |||||||| |||||    
T  32815195 gtgacaatttttgcaacaattttttctctcatactcacattattttttactttatctc 32815252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 317
Target Start/End: Complemental strand, 44184601 - 44184546
Alignment:
Q  262 gacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    |||||||||||  |||||||| ||||||||| ||||||||| |||||||| |||||    
T  44184601 gacaacttttgtgacaactttctctctcatactcacattactttttactttatctc 44184546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 317
Target Start/End: Original strand, 11564920 - 11564977
Alignment:
Q  260 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    |||||||||||||| | |||||| ||||||||| ||||||||  |||||||| |||||    
T  11564920 gtgacaacttttgctataactttctctctcatactcacattattttttactttatctc 11564977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 301
Target Start/End: Original strand, 41402534 - 41402575
Alignment:
Q  260 gtgacaacttttgcaacaactttttctctcatagtcacatta 301  Q
    ||||||||||||||||||||||| ||||||||| ||| ||||    
T  41402534 gtgacaacttttgcaacaactttctctctcatactcatatta 41402575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 300
Target Start/End: Original strand, 13437225 - 13437264
Alignment:
Q  260 gtgacaacttttgcaacaactttttctctcatagtcacatt 300  Q
    ||||||||||||| ||||||||||||||||||| |||||||    
T  13437225 gtgacaacttttg-aacaactttttctctcatactcacatt 13437264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 317
Target Start/End: Original strand, 41893943 - 41893999
Alignment:
Q  261 tgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||  |||||||| ||| ||||| ||||||||| |||||||| |||||    
T  41893943 tgacaacttttgtgacaactttctctttcatactcacattactttttactttatctc 41893999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 260 - 317
Target Start/End: Complemental strand, 754482 - 754425
Alignment:
Q  260 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||    
T  754482 gtgacaacttttgcaacaactttttctctcatactcacattactttttactttatctc 754425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 3611029 - 3610948
Alignment:
Q  242 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||      |||| |||||||||||||||||||||||||||| ||||||||| |||||||| |||||    
T  3611029 aaatgatatttgaacatccatttagtgataacttttgcaacaactttttctctcatactcacattactttttactttatctc 3610948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 235 - 317
Target Start/End: Complemental strand, 35213636 - 35213548
Alignment:
Q  235 ttatgacaaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    |||||| ||||||||||||||||||      ||||||||||||| ||||||||| ||||||||| ||||||||| |||||||| |||||    
T  35213636 ttatgagaaatgatatttgaacatctattttgtgacaacttttgtaacaactttctctctcatactcacattactttttactttatctc 35213548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 317
Target Start/End: Complemental strand, 13143426 - 13143369
Alignment:
Q  260 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||| ||||||||||||||| ||||||||| ||||||||| |||||||| |||||    
T  13143426 gtgacaatttttgcaacaactttctctctcatactcacattactttttactttatctc 13143369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 2075519 - 2075438
Alignment:
Q  242 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||      |||||| |||||||||||||||| ||||||||| ||||||||  |||||||| |||||    
T  2075519 aaatgatatttgaacatccatttagtgacagcttttgcaacaactttctctctcatactcacattattttttactttatctc 2075438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 317
Target Start/End: Original strand, 4820254 - 4820335
Alignment:
Q  242 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||      |||| |||||||||||||||||| ||||||||| ||||||||  |||||||| |||||    
T  4820254 aaatgatatttgaacatccatttagtgataacttttgcaacaactttctctctcatactcacattattttttactttatctc 4820335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 30036862 - 30036781
Alignment:
Q  242 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||      ||||||||||||||||||||||| ||||||||| |||||| |  |||||||| |||||    
T  30036862 aaatgatatttgaacatctatttagtgacaacttttgcaacaactttctctctcataatcacataattttttactttatctc 30036781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 317
Target Start/End: Complemental strand, 30152574 - 30152517
Alignment:
Q  260 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||||||| ||||||||| |||||| |  |||||||| |||||    
T  30152574 gtgacaacttttgcaacaactttctctctcatactcacataattttttactttatctc 30152517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 2777357 - 2777309
Alignment:
Q  263 acaacttttgcaacaactttttctctcatagtcacattaccttttactt 311  Q
    |||||||||||||||| ||| ||||||||| ||||||||| ||||||||    
T  2777357 acaacttttgcaacaattttctctctcatactcacattactttttactt 2777309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 317
Target Start/End: Complemental strand, 11547572 - 11547516
Alignment:
Q  261 tgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    |||||||||||||||||| ||| ||||||||| ||||||||  |||||||| |||||    
T  11547572 tgacaacttttgcaacaattttctctctcatactcacattattttttactttatctc 11547516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 317
Target Start/End: Complemental strand, 18141344 - 18141288
Alignment:
Q  261 tgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||  |||||||| ||||||||| ||||||||| |||||||| |||||    
T  18141344 tgacaacttttgtgacaactttctctctcatactcacattactttttactttatctc 18141288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 317
Target Start/End: Complemental strand, 20822911 - 20822855
Alignment:
Q  261 tgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||  |||||||| ||||||||| ||||||||| |||||||| |||||    
T  20822911 tgacaacttttgtgacaactttctctctcatactcacattactttttactttatctc 20822855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 317
Target Start/End: Original strand, 34504052 - 34504104
Alignment:
Q  265 aacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    |||||||||||||||||| ||||||||| ||||||||| ||| |||| |||||    
T  34504052 aacttttgcaacaactttctctctcatactcacattacttttcactttatctc 34504104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 298
Target Start/End: Complemental strand, 14986809 - 14986751
Alignment:
Q  242 aaatgatatttgaacatc--gtgacaacttttgcaacaactttttctctcatagtcaca 298  Q
    |||||||||||||||||   ||||||||||||||||||| ||| ||||||||| |||||    
T  14986809 aaatgatatttgaacatttagtgacaacttttgcaacaattttctctctcatactcaca 14986751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 301
Target Start/End: Complemental strand, 17551422 - 17551382
Alignment:
Q  261 tgacaacttttgcaacaactttttctctcatagtcacatta 301  Q
    |||||||||||| ||||||||| ||||||||| ||||||||    
T  17551422 tgacaacttttgtaacaactttctctctcatactcacatta 17551382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 255
Target Start/End: Original strand, 23628344 - 23628376
Alignment:
Q  223 ttattattattattatgacaaatgatatttgaa 255  Q
    |||||||||||||||||| ||||||||||||||    
T  23628344 ttattattattattatgagaaatgatatttgaa 23628376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 236 - 317
Target Start/End: Complemental strand, 36577486 - 36577399
Alignment:
Q  236 tatgacaaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||| ||||||||||||||||||      ||||||||||||||||||||||| ||||||||| ||||||||| |||||||| |||||    
T  36577486 tatgagaaatgatatttgaacatccattttgtgacaacttttgcaacaactttctctctcatactcacattactttttactttatctc 36577399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 260 - 317
Target Start/End: Original strand, 51191815 - 51191872
Alignment:
Q  260 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||| ||||||||||||||||||| ||||||||| |||||||| |||||    
T  51191815 gtgacaacttttgtaacaactttttctctcatactcacattacattttactttatctc 51191872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 317
Target Start/End: Original strand, 3603109 - 3603195
Alignment:
Q  237 atgacaaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    |||| ||||||||||||||||||      ||||||||||||||||||||||| ||||||||| ||||||||| ||||| || |||||    
T  3603109 atgagaaatgatatttgaacatccatttagtgacaacttttgcaacaactttctctctcatactcacattactttttagtttatctc 3603195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 317
Target Start/End: Original strand, 35136842 - 35136928
Alignment:
Q  237 atgacaaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    |||| ||||||||||||||||||      ||||||||||||||||||||||| | ||||||| ||||||||| |||||||| |||||    
T  35136842 atgagaaatgatatttgaacatccattttgtgacaacttttgcaacaactttctttctcatactcacattactttttactttatctc 35136928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 8411786 - 8411705
Alignment:
Q  242 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||      ||||||||||||||||||||||| ||||||||| ||||||||  |||||||| |||||    
T  8411786 aaatgatatttgaacatccatttagtgacaacttttgcaacaactttctctctcatactcacattattttttactttatctc 8411705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 46082189 - 46082108
Alignment:
Q  242 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||      ||||||||||||||||||||||| |||| |||| ||||||||| |||||||| |||||    
T  46082189 aaatgatatttgaacatccatttagtgacaacttttgcaacaactttctctcgcatactcacattactttttactttatctc 46082108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 317
Target Start/End: Original strand, 9008252 - 9008309
Alignment:
Q  260 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||||||| ||||||||| ||||||||  |||||||| |||||    
T  9008252 gtgacaacttttgcaacaactttctctctcatactcacattattttttactttatctc 9008309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 317
Target Start/End: Original strand, 21340549 - 21340606
Alignment:
Q  260 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||||||| ||| ||||| ||||||||| |||||||| |||||    
T  21340549 gtgacaacttttgcaacaactttctctttcatactcacattactttttactttatctc 21340606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 311
Target Start/End: Original strand, 1790535 - 1790586
Alignment:
Q  260 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttactt 311  Q
    ||||||||||||||||||||||| ||||||||| ||| ||||| ||||||||    
T  1790535 gtgacaacttttgcaacaactttctctctcatactcaaattactttttactt 1790586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 317
Target Start/End: Original strand, 756859 - 756940
Alignment:
Q  242 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||      ||||||||||||||||||||||| | ||||||| ||||||||  |||||||| |||||    
T  756859 aaatgatatttgaacatccatttagtgacaacttttgcaacaactttctttctcatactcacattattttttactttatctc 756940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 317
Target Start/End: Original strand, 902641 - 902722
Alignment:
Q  242 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||      ||||||||||||  ||||||||| ||||||||| ||||||||| |||||||| |||||    
T  902641 aaatgatatttgaacatctatttagtgacaacttttataacaactttctctctcatactcacattactttttactttatctc 902722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 301
Target Start/End: Complemental strand, 1853019 - 1852954
Alignment:
Q  242 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacatta 301  Q
    ||||||||||||||||||      ||||||||||||||||||||||| ||||||||| ||||||||    
T  1853019 aaatgatatttgaacatctatttagtgacaacttttgcaacaactttctctctcatactcacatta 1852954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 301
Target Start/End: Complemental strand, 33024639 - 33024574
Alignment:
Q  242 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacatta 301  Q
    ||||||||||||||||||      ||||||||||||||||||||||| ||||||||| ||||||||    
T  33024639 aaatgatatttgaacatctatttagtgacaacttttgcaacaactttctctctcatactcacatta 33024574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 317
Target Start/End: Complemental strand, 33054132 - 33054075
Alignment:
Q  260 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    |||||||||||||| |||||||| ||||||||| ||||||||  |||||||| |||||    
T  33054132 gtgacaacttttgctacaactttctctctcatactcacattattttttactttatctc 33054075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 317
Target Start/End: Complemental strand, 50328185 - 50328128
Alignment:
Q  260 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||||||| ||| ||||| |||| |||| |||||||| |||||    
T  50328185 gtgacaacttttgcaacaactttctctttcatactcacgttactttttactttatctc 50328128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 317
Target Start/End: Complemental strand, 10890089 - 10890033
Alignment:
Q  261 tgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||  |||||||| ||||||||| ||||||||| |||||||| |||||    
T  10890089 tgacaacttttgtgacaactttctctctcatactcacattactttttactttatctc 10890033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 317
Target Start/End: Original strand, 13489690 - 13489746
Alignment:
Q  261 tgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||  |||||||| ||||||||| ||||||||| |||||||| |||||    
T  13489690 tgacaacttttgtgacaactttctctctcatactcacattactttttactttatctc 13489746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 317
Target Start/End: Complemental strand, 32915115 - 32915059
Alignment:
Q  261 tgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||  |||||||| ||||||||| ||||||||| |||||||| |||||    
T  32915115 tgacaacttttgtgacaactttctctctcatactcacattactttttactttatctc 32915059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 301
Target Start/End: Original strand, 7128121 - 7128186
Alignment:
Q  242 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacatta 301  Q
    ||||||||||||||||||      ||||||||||||||||||||||  ||||||||| ||||||||    
T  7128121 aaatgatatttgaacatccatttagtgacaacttttgcaacaacttcctctctcatattcacatta 7128186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 311
Target Start/End: Complemental strand, 15705105 - 15705055
Alignment:
Q  261 tgacaacttttgcaacaactttttctctcatagtcacattaccttttactt 311  Q
    ||||||||||||  |||||||| ||||||||| ||||||||| ||||||||    
T  15705105 tgacaacttttgtgacaactttctctctcatactcacattactttttactt 15705055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 317
Target Start/End: Complemental strand, 20565159 - 20565105
Alignment:
Q  263 acaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    |||| ||||||||||||||| ||||||||| |||||||||  ||||||| |||||    
T  20565159 acaatttttgcaacaactttctctctcatactcacattactctttactttatctc 20565105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 317
Target Start/End: Original strand, 26837482 - 26837536
Alignment:
Q  263 acaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    |||||||||||||||| ||| ||||||||| |||| |||| |||||||| |||||    
T  26837482 acaacttttgcaacaattttctctctcatactcacgttactttttactttatctc 26837536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 317
Target Start/End: Original strand, 29586023 - 29586077
Alignment:
Q  263 acaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    |||||||||||||||| ||| ||||||||| ||||||||  |||||||| |||||    
T  29586023 acaacttttgcaacaattttctctctcatactcacattattttttactttatctc 29586077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 316
Target Start/End: Complemental strand, 4514495 - 4514442
Alignment:
Q  263 acaacttttgcaacaactttttctctcatagtcacattaccttttacttcatct 316  Q
    |||||||||||||||||||| | ||||||| ||||||||  |||||||| ||||    
T  4514495 acaacttttgcaacaactttctatctcatattcacattattttttactttatct 4514442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 317
Target Start/End: Complemental strand, 36779305 - 36779256
Alignment:
Q  268 ttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||| ||||||| | ||||||| |||||||| |||||    
T  36779305 ttttgcaacaactttttttctcatacttacattactttttactttatctc 36779256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 301
Target Start/End: Original strand, 48325994 - 48326035
Alignment:
Q  260 gtgacaacttttgcaacaactttttctctcatagtcacatta 301  Q
    ||||||||||||||||||||||| ||||||||| | ||||||    
T  48325994 gtgacaacttttgcaacaactttctctctcatacttacatta 48326035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 317
Target Start/End: Original strand, 47214236 - 47214292
Alignment:
Q  261 tgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||  |||||||| ||||||||| ||||||||  |||||||| |||||    
T  47214236 tgacaacttttgtgacaactttctctctcatactcacattattttttactttatctc 47214292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 317
Target Start/End: Original strand, 52362510 - 52362566
Alignment:
Q  261 tgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||  |||||||| ||||||||| ||||||||  |||||||| |||||    
T  52362510 tgacaacttttgtgacaactttctctctcatactcacattattttttactttatctc 52362566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 624380 - 624299
Alignment:
Q  242 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||      ||||||||||||||||||||||| ||||||||| ||||||||| |||||||| |||||    
T  624380 aaatgatatttgaacatctatttagtgacaacttttgcaacaactttctctctcatactcacattactttttactttatctc 624299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 317
Target Start/End: Original strand, 22819652 - 22819733
Alignment:
Q  242 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||      ||||||||||||||||||||||| ||||||||| ||||||||| |||||||| |||||    
T  22819652 aaatgatatttgaacatccattttgtgacaacttttgcaacaactttctctctcatactcacattactttttactttatctc 22819733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 263 - 317
Target Start/End: Original strand, 47965769 - 47965823
Alignment:
Q  263 acaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||| |||||    
T  47965769 acaacttttgcaacaactttttctctcatactcacattactttttactttatctc 47965823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 260 - 317
Target Start/End: Complemental strand, 46406018 - 46405961
Alignment:
Q  260 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||||||||||||||||| ||||||||  |||||||| |||||    
T  46406018 gtgacaacttttgcaacaactttttctctcatactcacattaatttttactttatctc 46405961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 234 - 317
Target Start/End: Original strand, 14451388 - 14451477
Alignment:
Q  234 attatgacaaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||| ||||||||||||||||||      ||||||||||| ||||||||||| ||||||||| ||||||||  |||||||| |||||    
T  14451388 attatgagaaatgatatttgaacatccatttagtgacaactttagcaacaactttctctctcatactcacattagtttttactttatctc 14451477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 317
Target Start/End: Original strand, 30079849 - 30079930
Alignment:
Q  242 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||      ||||||||||||||||||||||| ||||||||| ||||||||  |||||||| |||||    
T  30079849 aaatgatatttgaacatccatttagtgacaacttttgcaacaactttctctctcatactcacattattttttactttatctc 30079930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 39345048 - 39344967
Alignment:
Q  242 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||      ||||||| ||||||||||||||| ||||||||| ||||||||| |||||||| |||||    
T  39345048 aaatgatatttgaacatccattttgtgacaatttttgcaacaactttctctctcatactcacattactttttactttatctc 39344967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 41486211 - 41486130
Alignment:
Q  242 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||      |||| |||||||||||||||||| ||||||||| ||||||||| |||||||| |||||    
T  41486211 aaatgatatttgaacatccatttagtgataacttttgcaacaactttctctctcatactcacattactttttactttatctc 41486130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 301
Target Start/End: Original strand, 21260325 - 21260366
Alignment:
Q  260 gtgacaacttttgcaacaactttttctctcatagtcacatta 301  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  21260325 gtgacaacttttgcaacaactttttctctcatactcacatta 21260366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 317
Target Start/End: Original strand, 47099049 - 47099106
Alignment:
Q  260 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||||||| |||| |||| ||||||||| |||||||| |||||    
T  47099049 gtgacaacttttgcaacaactttctctcacatactcacattactttttactttatctc 47099106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 261 - 317
Target Start/End: Complemental strand, 6141821 - 6141765
Alignment:
Q  261 tgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    |||||||||||||||||||||| ||||||||| |||||||||  ||||||| |||||    
T  6141821 tgacaacttttgcaacaactttctctctcatactcacattactctttactttatctc 6141765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 14010186 - 14010105
Alignment:
Q  242 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||      |||||||||||| ||| |||||||||||||||| ||| ||||| |||||||| |||||    
T  14010186 aaatgatatttgaacatccattttgtgacaacttttacaataactttttctctcatactcatattactttttactttatctc 14010105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 301
Target Start/End: Complemental strand, 5932201 - 5932160
Alignment:
Q  260 gtgacaacttttgcaacaactttttctctcatagtcacatta 301  Q
    ||||||||||||||||||||||| ||||||||| ||||||||    
T  5932201 gtgacaacttttgcaacaactttctctctcatactcacatta 5932160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 317
Target Start/End: Original strand, 13086049 - 13086106
Alignment:
Q  260 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||| ||||||||| ||||||||| ||||||||| ||||| || |||||    
T  13086049 gtgacaacttttgtaacaactttctctctcatactcacattactttttattttatctc 13086106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 317
Target Start/End: Complemental strand, 9118907 - 9118851
Alignment:
Q  261 tgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    |||||||||||||||||| ||| ||||||||| ||||||||  |||||||| |||||    
T  9118907 tgacaacttttgcaacaattttctctctcataatcacattattttttactttatctc 9118851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 317
Target Start/End: Complemental strand, 26207051 - 26206964
Alignment:
Q  236 tatgacaaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||| ||||||||||||||||||      |||| || ||||||||||| ||| ||||||||| ||||||||| |||||||| |||||    
T  26207051 tatgagaaatgatatttgaacatccatttagtgataatttttgcaacaattttctctctcatattcacattactttttactttatctc 26206964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 36111437 - 36111393
Alignment:
Q  263 acaacttttgcaacaactttttctctcatagtcacattacctttt 307  Q
    |||||||||||||||||||| ||||||||| ||||||||| ||||    
T  36111437 acaacttttgcaacaactttatctctcatactcacattacttttt 36111393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 317
Target Start/End: Complemental strand, 38338964 - 38338909
Alignment:
Q  262 gacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    |||||||||||  |||||||| ||||||||| ||||||||| |||||||| |||||    
T  38338964 gacaacttttgtgacaactttctctctcatactcacattactttttactttatctc 38338909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 317
Target Start/End: Original strand, 14527647 - 14527728
Alignment:
Q  242 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||      |||||||||||||| ||||||||  |||||||| ||||||||  |||||||| |||||    
T  14527647 aaatgatatttgaacatccattttgtgacaacttttgctacaactttcactctcatactcacattattttttactttatctc 14527728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 317
Target Start/End: Original strand, 51887666 - 51887747
Alignment:
Q  242 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||      |||||||||||||| |||||||| ||||||||| ||| ||||  |||||||| |||||    
T  51887666 aaatgatatttgaacatccattttgtgacaacttttgctacaactttctctctcatactcaaattattttttactttatctc 51887747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 317
Target Start/End: Original strand, 51194296 - 51194353
Alignment:
Q  260 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    |||||||||||| |||||||||| ||| ||||| |||||| || |||||||| |||||    
T  51194296 gtgacaacttttacaacaactttctctttcatactcacatcactttttactttatctc 51194353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 317
Target Start/End: Complemental strand, 23822288 - 23822232
Alignment:
Q  261 tgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    |||||||||||||||||||||| || |||||| ||| ||||  |||||||| |||||    
T  23822288 tgacaacttttgcaacaactttctccctcatattcatattattttttactttatctc 23822232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 317
Target Start/End: Complemental strand, 28458420 - 28458364
Alignment:
Q  261 tgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||  |||||||| ||||||||| ||||||||  |||||||| |||||    
T  28458420 tgacaacttttgtgacaactttctctctcatactcacattattttttactttatctc 28458364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 317
Target Start/End: Complemental strand, 30170063 - 30170007
Alignment:
Q  261 tgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||  |||||||| ||||||||| ||||||||  |||||||| |||||    
T  30170063 tgacaacttttgtgacaactttctctctcatactcacattattttttactttatctc 30170007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 317
Target Start/End: Complemental strand, 53152360 - 53152308
Alignment:
Q  265 aacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    |||||||||||||| ||||||||||||| ||| ||||  |||||||| |||||    
T  53152360 aacttttgcaacaattttttctctcatattcatattattttttactttatctc 53152308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 260 - 317
Target Start/End: Original strand, 7592876 - 7592933
Alignment:
Q  260 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||||||| ||||||||||||||||||  |||||||| |||||    
T  7592876 gtgacaacttttgcaacaactttatctctcatagtcacattattttttactttatctc 7592933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 235 - 317
Target Start/End: Complemental strand, 16872231 - 16872143
Alignment:
Q  235 ttatgacaaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    |||||| ||||||||||||||||||      ||||||||||||||||||||||| ||| ||||| ||||||||| |||||||| |||||    
T  16872231 ttatgagaaatgatatttgaacatccattttgtgacaacttttgcaacaactttctctatcatactcacattactttttactttatctc 16872143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 261 - 317
Target Start/End: Complemental strand, 30136058 - 30136002
Alignment:
Q  261 tgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    |||||||||||||||||||||| ||||||||| ||||||||| |||||||| |||||    
T  30136058 tgacaacttttgcaacaactttctctctcatattcacattactttttactttatctc 30136002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 262 - 317
Target Start/End: Complemental strand, 7956049 - 7955994
Alignment:
Q  262 gacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||||| ||||||||| ||||||||| |||||||| |||||    
T  7956049 gacaacttttgcaacaactttctctctcatactcacattactttttactttatctc 7955994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 1633958 - 1633877
Alignment:
Q  242 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||      ||||||||||||||||||||||| ||||||||| ||||||||  |||||||| |||||    
T  1633958 aaatgatatttgaacatccatttagtgacaacttttgcaacaactttctctctcatactcacattattttttactttatctc 1633877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 317
Target Start/End: Complemental strand, 11658044 - 11657987
Alignment:
Q  260 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||||||| ||||||||| ||||||||| ||||| || |||||    
T  11658044 gtgacaacttttgcaacaactttctctctcatactcacattactttttattttatctc 11657987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 317
Target Start/End: Original strand, 16613630 - 16613718
Alignment:
Q  235 ttatgacaaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    |||||| ||||||||||||||||||      ||||||| |||||| |||||||||||||||||| ||||||||  |||||||| |||||    
T  16613630 ttatgagaaatgatatttgaacatctattttgtgacaatttttgctacaactttttctctcatactcacattattttttactttatctc 16613718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 317
Target Start/End: Complemental strand, 37784015 - 37783958
Alignment:
Q  260 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||||||| ||||||||| ||| ||||| |||||||| |||||    
T  37784015 gtgacaacttttgcaacaactttctctctcatactcagattactttttactttatctc 37783958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 261 - 317
Target Start/End: Original strand, 11017833 - 11017889
Alignment:
Q  261 tgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    |||||||||||||||||||||| ||||||||| ||||||||  |||||||| |||||    
T  11017833 tgacaacttttgcaacaactttctctctcatactcacattattttttactttatctc 11017889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 261 - 317
Target Start/End: Complemental strand, 40739955 - 40739899
Alignment:
Q  261 tgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    |||||||||||||||||| ||||||||||||| ||||||||  |||||||| |||||    
T  40739955 tgacaacttttgcaacaattttttctctcatattcacattattttttactttatctc 40739899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 317
Target Start/End: Complemental strand, 16327194 - 16327139
Alignment:
Q  262 gacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    |||||||||||| |||||||| ||||||||| ||||||||| |||||||| |||||    
T  16327194 gacaacttttgcgacaactttctctctcatactcacattactttttactttatctc 16327139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 301
Target Start/End: Original strand, 16966788 - 16966853
Alignment:
Q  242 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacatta 301  Q
    ||||||||||||||||||      ||||||||||||||||||||||| ||||||||| ||||||||    
T  16966788 aaatgatatttgaacatccatttagtgacaacttttgcaacaactttctctctcatactcacatta 16966853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 311
Target Start/End: Original strand, 34018836 - 34018886
Alignment:
Q  261 tgacaacttttgcaacaactttttctctcatagtcacattaccttttactt 311  Q
    |||||||||||||||||| ||| ||||||||| ||||||||| ||||||||    
T  34018836 tgacaacttttgcaacaattttctctctcatactcacattactttttactt 34018886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 317
Target Start/End: Complemental strand, 33589274 - 33589217
Alignment:
Q  260 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||| ||| ||||||||| ||||||||  |||||||| |||||    
T  33589274 gtgacaacttttgcaacaattttctctctcatactcacattattttttactttatctc 33589217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 317
Target Start/End: Original strand, 34718111 - 34718199
Alignment:
Q  235 ttatgacaaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    |||||| ||||||||||||||||||      |||||||||||||  |||||||| ||||||||| ||||||||  |||||||| |||||    
T  34718111 ttatgagaaatgatatttgaacatccattttgtgacaacttttgttacaactttctctctcatactcacattattttttactttatctc 34718199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 317
Target Start/End: Complemental strand, 4658306 - 4658250
Alignment:
Q  261 tgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||  |||||||||||||||||| | ||||||| |||||||| |||||    
T  4658306 tgacaacttttgtgacaactttttctctcatacttacattactttttactttatctc 4658250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 307
Target Start/End: Complemental strand, 2731004 - 2730958
Alignment:
Q  261 tgacaacttttgcaacaactttttctctcatagtcacattacctttt 307  Q
    |||||||||||| ||||||||| ||||||||| |||||||| |||||    
T  2731004 tgacaacttttgtaacaactttctctctcatattcacattatctttt 2730958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 317
Target Start/End: Original strand, 36110141 - 36110222
Alignment:
Q  242 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||      |||| |||||||||||||| ||| ||| ||||| ||||||||| |||||||| |||||    
T  36110141 aaatgatatttgaacatccatttagtgaaaacttttgcaacaattttctctttcatactcacattactttttactttatctc 36110222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 317
Target Start/End: Original strand, 41520971 - 41521052
Alignment:
Q  242 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||      |||| |||||||||||||| ||| ||||||||| ||||||||  |||||||| |||||    
T  41520971 aaatgatatttgaacatccatttagtgataacttttgcaacaattttctctctcatactcacattattttttactttatctc 41521052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 301
Target Start/End: Complemental strand, 32847731 - 32847690
Alignment:
Q  260 gtgacaacttttgcaacaactttttctctcatagtcacatta 301  Q
    ||||||||||||||||||||||| ||||| ||| ||||||||    
T  32847731 gtgacaacttttgcaacaactttctctcttatactcacatta 32847690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 301
Target Start/End: Complemental strand, 34490201 - 34490160
Alignment:
Q  260 gtgacaacttttgcaacaactttttctctcatagtcacatta 301  Q
    ||||||||||||||||||||||| ||||| ||| ||||||||    
T  34490201 gtgacaacttttgcaacaactttctctcttatactcacatta 34490160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 317
Target Start/End: Original strand, 12707177 - 12707233
Alignment:
Q  261 tgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||| |||||||| ||||||||| |||| |||| ||||| || |||||    
T  12707177 tgacaacttttgcgacaactttctctctcatactcacgttactttttaatttatctc 12707233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 37449467 - 37449423
Alignment:
Q  263 acaacttttgcaacaactttttctctcatagtcacattacctttt 307  Q
    ||||||||||  |||||||||||||||||| |||||||| |||||    
T  37449467 acaacttttgtgacaactttttctctcatactcacattatctttt 37449423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 260 - 317
Target Start/End: Complemental strand, 21064270 - 21064213
Alignment:
Q  260 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||||||| ||||||||| ||||||||| |||||||| |||||    
T  21064270 gtgacaacttttgcaacaactttctctctcatactcacattactttttactttatctc 21064213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 4431004 - 4430923
Alignment:
Q  242 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||      ||||||||||||||||||||||||||||||||| |||||| |  |||||||| |||||    
T  4431004 aaatgatatttgaacatccatttagtgacaacttttgcaacaactttttctctcatactcacatcattttttactttatctc 4430923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 35099073 - 35098992
Alignment:
Q  242 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||      ||||||||||||||||||||||| ||||||||| ||||||||  |||||||| |||||    
T  35099073 aaatgatatttgaacatctatttagtgacaacttttgcaacaactttctctctcatactcacattattttttactttatctc 35098992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 317
Target Start/End: Original strand, 43441768 - 43441822
Alignment:
Q  263 acaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    |||||||||||||||||||| ||||||||| ||||||||| |||||||| |||||    
T  43441768 acaacttttgcaacaactttctctctcatactcacattactttttactttatctc 43441822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 317
Target Start/End: Original strand, 5042251 - 5042332
Alignment:
Q  242 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||      ||||||| ||||||||||||||| ||||||||| ||||||||  |||||||| |||||    
T  5042251 aaatgatatttgaacatccatttagtgacaatttttgcaacaactttatctctcatactcacattattttttactttatctc 5042332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 8267888 - 8267807
Alignment:
Q  242 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||      ||||||| ||||||||||||||| ||||||||| ||||||||  |||||||| |||||    
T  8267888 aaatgatatttgaacatccatttagtgacaatttttgcaacaactttctctctcatactcacattattttttactttatctc 8267807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 8675501 - 8675420
Alignment:
Q  242 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||      |||| |||||||||||||| ||| ||||||||| ||||||||| |||||||| |||||    
T  8675501 aaatgatatttgaacatccattttgtgataacttttgcaacaattttctctctcatactcacattactttttactttatctc 8675420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 18842389 - 18842308
Alignment:
Q  242 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||      |||| |||||||||||||||||| ||||||||| ||||||||  |||||||| |||||    
T  18842389 aaatgatatttgaacatccatttagtgataacttttgcaacaactttctctctcatactcacattattttttactttatctc 18842308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 2689045 - 2688973
Alignment:
Q  242 aaatgatatttgaacatcgtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    |||||||||||||||||   ||||||||||||||||||||| ||| ||||| | ||||||  |||||||| |||||    
T  2689045 aaatgatatttgaacat---gacaacttttgcaacaactttctctttcatatttacattattttttactttatctc 2688973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 317
Target Start/End: Original strand, 15267811 - 15267868
Alignment:
Q  260 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||||||| ||||||||| ||| ||||  |||||||| |||||    
T  15267811 gtgacaacttttgcaacaactttctctctcatattcatattattttttactttatctc 15267868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 317
Target Start/End: Original strand, 6517740 - 6517796
Alignment:
Q  261 tgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||  |||||||| ||||||||| ||||||||| |||||||| |||||    
T  6517740 tgacaacttttgtgacaactttctctctcatactcacattactttttactttatctc 6517796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 301
Target Start/End: Complemental strand, 16437607 - 16437568
Alignment:
Q  262 gacaacttttgcaacaactttttctctcatagtcacatta 301  Q
    ||||||||||||||||||||| ||||||||| ||||||||    
T  16437607 gacaacttttgcaacaactttctctctcatactcacatta 16437568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 317
Target Start/End: Original strand, 9977122 - 9977203
Alignment:
Q  242 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||      ||||||||||||||||||| ||| ||  ||||| ||||||||| |||||||| |||||    
T  9977122 aaatgatatttgaacatccatttagtgacaacttttgcaacaattttctcaatcatactcacattactttttactttatctc 9977203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 317
Target Start/End: Complemental strand, 5821656 - 5821599
Alignment:
Q  260 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||| ||||||||||| ||||||||||||| | ||||||  |||||||| |||||    
T  5821656 gtgacaatttttgcaacaattttttctctcatacttacattattttttactttatctc 5821599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 311
Target Start/End: Complemental strand, 6446560 - 6446511
Alignment:
Q  262 gacaacttttgcaacaactttttctctcatagtcacattaccttttactt 311  Q
    |||||||||||  |||||||| ||||||||| ||||||||| ||||||||    
T  6446560 gacaacttttgtgacaactttctctctcatactcacattactttttactt 6446511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 317
Target Start/End: Complemental strand, 6931103 - 6931046
Alignment:
Q  260 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    |||| |||||||||||||||||| ||| ||||| ||||||||  |||||||| |||||    
T  6931103 gtgataacttttgcaacaactttatctttcatactcacattattttttactttatctc 6931046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 317
Target Start/End: Original strand, 33620635 - 33620692
Alignment:
Q  260 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||| ||||||||||||| | | ||||  |||||||| |||||    
T  33620635 gtgacaacttttgcaacaattttttctctcatacttatattattttttactttatctc 33620692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 317
Target Start/End: Original strand, 10649463 - 10649519
Alignment:
Q  261 tgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||  |||||||| ||| ||||| ||||||||| |||||||| |||||    
T  10649463 tgacaacttttgtgacaactttctctttcatactcacattactttttactttatctc 10649519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 317
Target Start/End: Original strand, 20770159 - 20770215
Alignment:
Q  261 tgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||  |||||||| ||||||||| ||||||||  |||||||| |||||    
T  20770159 tgacaacttttgtgacaactttctctctcatactcacattattttttactttatctc 20770215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0687 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 317
Target Start/End: Original strand, 2227 - 2281
Alignment:
Q  263 acaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    |||||||||||||||||||| ||||||||||||||||||  |||||||| |||||    
T  2227 acaacttttgcaacaactttatctctcatagtcacattattttttactttatctc 2281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 317
Target Start/End: Original strand, 19639 - 19720
Alignment:
Q  242 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||      ||||||||||||||||||||||| ||||||||| |||||||||  ||||||| |||||    
T  19639 aaatgatatttgaacatccatttagtgacaacttttgcaacaactttctctctcatactcacattactctttactttatctc 19720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 13347883 - 13347802
Alignment:
Q  242 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||      ||||||| ||||||||||||||| ||||||||| ||||||||| |||||||| |||||    
T  13347883 aaatgatatttgaacatccattttgtgacaatttttgcaacaactttctctctcatactcacattactttttactttatctc 13347802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 35589455 - 35589374
Alignment:
Q  242 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||      ||||||||||||||||||| ||| ||||||||| ||||||||| |||||||| |||||    
T  35589455 aaatgatatttgaacatccattttgtgacaacttttgcaacaattttctctctcatactcacattactttttactttatctc 35589374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 317
Target Start/End: Complemental strand, 39213814 - 39213757
Alignment:
Q  260 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||||||| ||||||||| ||||||||  |||||||| |||||    
T  39213814 gtgacaacttttgcaacaactttatctctcatactcacattattttttactttatctc 39213757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 317
Target Start/End: Original strand, 39449294 - 39449351
Alignment:
Q  260 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||||||| ||||||||| ||| ||||| |||||||| |||||    
T  39449294 gtgacaacttttgcaacaactttctctctcatactcagattactttttactttatctc 39449351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 301
Target Start/End: Original strand, 18176943 - 18177008
Alignment:
Q  242 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacatta 301  Q
    ||||||||||||||||||      ||||||||||||||||||||||| ||||||||| ||||||||    
T  18176943 aaatgatatttgaacatctatttagtgacaacttttgcaacaactttctctctcatactcacatta 18177008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 317
Target Start/End: Original strand, 36802899 - 36802980
Alignment:
Q  242 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||      |||||||||||||| |||||||| ||||||||| ||||||||  |||||||| |||||    
T  36802899 aaatgatatttgaacatccattttgtgacaacttttgctacaactttctctctcatactcacattattttttactttatctc 36802980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 317
Target Start/End: Complemental strand, 6999111 - 6999055
Alignment:
Q  261 tgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||  |||||||| ||||||||| ||||||||| |||||||| |||||    
T  6999111 tgacaacttttgtgacaactttctctctcatactcacattactttttactttatctc 6999055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 301
Target Start/End: Original strand, 17779394 - 17779454
Alignment:
Q  242 aaatgatatttgaacatc-gtgacaacttttgcaacaactttttctctcatagtcacatta 301  Q
    |||| ||||||||||||  ||||||| ||||||||||||||||||||||||| | ||||||    
T  17779394 aaataatatttgaacattagtgacaatttttgcaacaactttttctctcatacttacatta 17779454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 316
Target Start/End: Complemental strand, 29684656 - 29684600
Alignment:
Q  260 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatct 316  Q
    ||||||| ||||||||||||||| ||||||||| |||| |||| |||||||| ||||    
T  29684656 gtgacaatttttgcaacaactttctctctcatactcaccttactttttactttatct 29684600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 317
Target Start/End: Original strand, 37257452 - 37257534
Alignment:
Q  242 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctca-tagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||      ||||||||||||||||||||||| ||||||| || ||||||||  |||||||| |||||    
T  37257452 aaatgatatttgaacatccatttagtgacaacttttgcaacaactttctctctcattactcacattattttttactttatctc 37257534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 317
Target Start/End: Complemental strand, 9634465 - 9634423
Alignment:
Q  275 acaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    |||||||||||||||||| ||||||||| |||||||| |||||    
T  9634465 acaactttttctctcatactcacattactttttactttatctc 9634423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 301
Target Start/End: Complemental strand, 12889876 - 12889835
Alignment:
Q  260 gtgacaacttttgcaacaactttttctctcatagtcacatta 301  Q
    |||||||||||||| |||||||| ||||||||| ||||||||    
T  12889876 gtgacaacttttgctacaactttctctctcatactcacatta 12889835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 317
Target Start/End: Original strand, 16677699 - 16677756
Alignment:
Q  260 gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||| ||| ||| | ||| ||||||||| |||||||| |||||    
T  16677699 gtgacaacttttgcaacaattttctcttttatattcacattactttttactttatctc 16677756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 301
Target Start/End: Complemental strand, 4758706 - 4758642
Alignment:
Q  242 aaatgatatttgaacatc-----gtgacaacttttgcaacaactttttctctcatagtcacatta 301  Q
    ||||||||||||||||||     |||| |||||||||||||||||| ||| ||||| ||||||||    
T  4758706 aaatgatatttgaacatcatttagtgataacttttgcaacaactttctctttcatattcacatta 4758642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 317
Target Start/End: Original strand, 6170658 - 6170714
Alignment:
Q  261 tgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||  |||||||| ||||||||| |||| |||| |||||||| |||||    
T  6170658 tgacaacttttgtgacaactttctctctcatactcacgttactttttactttatctc 6170714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 41042283 - 41042327
Alignment:
Q  263 acaacttttgcaacaactttttctctcatagtcacattacctttt 307  Q
    ||||||||||  |||||||||||||||||| |||||||| |||||    
T  41042283 acaacttttgtgacaactttttctctcatactcacattatctttt 41042327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 311
Target Start/End: Original strand, 8242 - 8292
Alignment:
Q  261 tgacaacttttgcaacaactttttctctcatagtcacattaccttttactt 311  Q
    |||||||||||||||||||||| ||||||||| ||| ||||| ||||||||    
T  8242 tgacaacttttgcaacaactttctctctcatattcatattactttttactt 8292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 317
Target Start/End: Original strand, 10 - 91
Alignment:
Q  242 aaatgatatttgaacatc------gtgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    ||||||||||||||||||      |||| |||||||||||||| ||| ||| ||||| ||||||||| |||||||| |||||    
T  10 aaatgatatttgaacatccatttagtgaaaacttttgcaacaattttctctttcatactcacattactttttactttatctc 91  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0449 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0449
Description:

Target: scaffold0449; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 317
Target Start/End: Original strand, 9231 - 9287
Alignment:
Q  261 tgacaacttttgcaacaactttttctctcatagtcacattaccttttacttcatctc 317  Q
    |||||||||||| ||||||||| ||||| ||| ||| ||||| |||||||| |||||    
T  9231 tgacaacttttgaaacaactttctctcttatactcatattactttttactttatctc 9287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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