View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19397_high_1 (Length: 568)
Name: NF19397_high_1
Description: NF19397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19397_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 296
Target Start/End: Complemental strand, 40385513 - 40385237
Alignment:
| Q |
16 |
aaaataatgaacaacttatctccaatgtaaggcatgataaatccaaacgttgtttatatctagcggtgaaaataattgtggttcgcacaatcacaaatat |
115 |
Q |
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| T |
40385513 |
aaaataatgaacaacttatctccaatgtaagacatgataaatccaaacgttgtttatatctagctgtgaaaataattgtggttcgcacaatcacaaatat |
40385414 |
T |
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| Q |
116 |
aatagaaaggacaattaatattacaaaatgtgcataacttgaagactaacggtgcaaacaaaatgtaaaggactgcaggcagacataattttgattgagt |
215 |
Q |
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| T |
40385413 |
aatagaaaggacaat----attacaaaatgtgcataacttgaagactaacggtgcaaacaaaatgtaaaggactgcaggcagacataattttgattgagt |
40385318 |
T |
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| Q |
216 |
tgtgttcaaagctaaacgcataaaagtaataatgtaaggtgcatataatctcgnnnnnnnactatttctttcaagctaaca |
296 |
Q |
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| T |
40385317 |
tgtgttcaaagctaaacgcataaaagtaataatgtaaggtgcatataatctcgttttttttctatttctttcaagctaaca |
40385237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 401 - 554
Target Start/End: Complemental strand, 40385189 - 40385054
Alignment:
| Q |
401 |
attttagagaaatgctgctgcatgcaacaaatatatttttcagaaaagaccacgatagcacaattataactatagctgggcccatcaattttatttccac |
500 |
Q |
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| T |
40385189 |
attttagagaaatgctgctgcatgcaacaaatatatttttcagaaaagaccacgatagc-----------------tgggcccatcagttttatttccac |
40385107 |
T |
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| Q |
501 |
ccaccaaaccttgtgatgaatagtactcctcttcattttaaccgcttaaacagt |
554 |
Q |
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| T |
40385106 |
ccaccaa-ccttgtgatgaatagcactcctcttcattttaaccgcttaaacagt |
40385054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 332 - 382
Target Start/End: Complemental strand, 40385235 - 40385185
Alignment:
| Q |
332 |
tgttgtgaaaatggaaattaaaacatgaaaaagtaatagttacacaatttt |
382 |
Q |
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| T |
40385235 |
tgttgtgaaaatggaaattaaaacatgaaaaagtaatagttacacaatttt |
40385185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 419 - 507
Target Start/End: Original strand, 46813093 - 46813182
Alignment:
| Q |
419 |
tgcatgcaacaaatatatttttcagaaaagaccac-gatagcacaattataactatagctgggcccatcaattttatttccacccaccaa |
507 |
Q |
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| T |
46813093 |
tgcatgcagcgaatatattttccagaaaagatcaccgatagcacaattataactatagttgggcccatcaattttatttccatccaccaa |
46813182 |
T |
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